Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 1.8e-282 975.3 513 100.0
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.1e-222 774.2 493 79.5
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.4e-220 767.3 493 78.7
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 3.0e-197 692.2 491 72.3
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 2.2e-192 676.0 499 70.1
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 5.7e-188 661.4 495 71.7
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 4.9e-187 658.3 492 70.3
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 2.7e-185 652.5 494 67.8
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 7.2e-183 644.4 497 69.4
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 9.5e-183 644.0 492 68.1
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 9.5e-183 644.0 499 68.1
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 1.2e-182 643.7 439 77.9
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 3.6e-182 642.1 497 67.4
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 8.0e-182 641.0 500 66.8
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 1.4e-181 640.2 495 66.9
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 2.0e-180 636.3 494 68.4
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 2.0e-180 636.3 497 67.2
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 4.4e-180 635.2 490 68.0
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 4.4e-180 635.2 490 68.2
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 5.7e-180 634.8 492 66.3
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 8.3e-179 630.9 494 66.4
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 1.1e-178 630.6 492 67.3
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 1.8e-178 629.8 499 67.7
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 1.8e-178 629.8 499 67.3
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 2.0e-177 626.3 494 65.8
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 5.9e-177 624.8 506 66.2
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 1.0e-176 624.0 494 66.0
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 8.6e-176 620.9 489 66.3
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 1.9e-175 619.8 495 65.7
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 3.3e-175 619.0 499 65.7
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.3e-175 617.8 420 76.9
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 2.1e-174 616.3 501 65.1
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 6.2e-174 614.8 501 65.1
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 3.1e-173 612.5 491 65.8
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 5.2e-173 611.7 492 64.8
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 8.9e-173 610.9 488 65.0
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 1.2e-172 610.5 496 63.5
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 1.5e-172 610.1 496 63.5
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 2.0e-172 609.8 498 62.7
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 3.4e-172 609.0 491 66.6
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 1.7e-171 606.7 491 63.5
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 2.4e-170 602.8 495 65.3
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 4.1e-170 602.1 496 63.9
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 5.4e-170 601.7 499 62.5
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 5.4e-170 601.7 501 62.7
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 5.4e-170 601.7 501 62.7
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 7.0e-170 601.3 499 62.5
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 9.2e-170 600.9 497 62.6
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 9.2e-170 600.9 497 62.6
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.2e-169 600.5 491 64.4
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 2.7e-169 599.4 493 65.1
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.0e-168 597.4 497 62.4
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 1.3e-168 597.0 492 65.0
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 1.7e-168 596.7 509 62.3
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 5.0e-168 595.1 492 65.7
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 1.9e-167 593.2 495 62.0
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 7.3e-167 591.3 507 63.5
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 8.1e-166 587.8 495 61.2
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.1e-165 587.4 505 62.8
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 7.5e-164 581.3 462 66.0
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.7e-163 580.1 500 61.8
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.9e-163 579.3 495 62.8
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 4.9e-163 578.6 505 60.6
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 1.9e-162 576.6 503 61.0
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 1.9e-162 576.6 491 63.7
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 4.1e-162 575.5 496 62.1
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 7.1e-162 574.7 449 67.7
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 9.2e-162 574.3 491 62.7
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 3.5e-161 572.4 443 68.8
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 4.6e-161 572.0 506 60.5
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 7.8e-161 571.2 493 63.1
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 1.3e-160 570.5 496 62.9
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 5.1e-160 568.5 506 60.3
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 6.6e-160 568.2 489 61.1
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 7.3e-159 564.7 533 58.5
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 1.2e-158 563.9 488 64.3
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-158 563.5 508 60.8
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 1.6e-158 563.5 563 58.1
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 1.1e-157 560.8 501 59.3
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.2e-156 557.4 447 65.5
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 2.7e-153 546.2 492 60.0
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 3.9e-152 542.3 509 58.0
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 2.1e-150 536.6 447 62.9
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 1.8e-149 533.5 439 63.8
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.2e-148 530.8 389 71.5
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 1.3e-147 527.3 444 63.3
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 1.4e-146 523.9 485 60.0
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 7.1e-146 521.5 491 58.2
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.6e-145 520.4 474 58.9
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 6.0e-145 518.5 385 70.6
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 9.0e-141 504.6 493 59.0
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 2.4e-138 496.5 494 56.9
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 1.2e-137 494.2 473 57.7
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 2.2e-131 473.4 370 65.4
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.6e-129 467.2 492 55.7
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-124 450.7 269 83.3
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 1.5e-124 450.7 351 67.5
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 2.0e-124 450.3 345 66.4
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.1e-121 440.3 372 66.7
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 3.5e-121 439.5 390 60.5
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 4.3e-119 432.6 393 58.8
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 8.2e-118 428.3 440 53.0
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 5.0e-115 419.1 337 66.2
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 5.0e-115 419.1 500 46.4
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.2e-114 416.4 353 62.3
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 6.7e-112 408.7 495 50.3
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.5e-111 407.5 393 57.3
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 5.9e-108 395.6 490 49.8
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 8.5e-107 391.7 339 59.3
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 3.9e-104 382.9 498 45.6
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 3.9e-104 382.9 577 44.2
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 6.3e-102 375.6 335 60.6
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 5.3e-101 372.5 335 61.2
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.9e-98 364.0 216 81.9
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 4.8e-94 349.4 494 41.9
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.1e-93 348.2 259 70.7
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 8.5e-91 338.6 366 50.0
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 9.4e-90 335.1 292 61.6
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.7e-87 325.9 207 77.8
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 5.7e-87 325.9 345 55.4
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 6.3e-86 322.4 290 57.6
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-85 321.6 242 68.6
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 5.3e-85 319.3 239 71.1
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 2.3e-80 303.9 360 49.4
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 6.8e-80 302.4 239 67.4
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.5e-76 290.0 171 79.5
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.6e-73 281.2 245 59.2
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 5.7e-71 272.7 141 96.5
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 5.4e-69 266.2 191 68.6
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-66 257.7 365 43.0
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 2.3e-64 250.8 264 58.0
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 9.8e-63 245.4 418 40.7
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.0e-59 235.3 215 57.7
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 1.3e-54 218.4 176 65.9
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 1.7e-54 218.0 205 61.0
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 8.3e-54 215.7 198 56.6
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 5.4e-45 186.4 505 32.3
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 9.5e-42 175.6 206 51.0
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 4.9e-38 163.3 180 52.2
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.6e-33 148.3 156 52.6
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 8.4e-30 136.0 156 47.4
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 1.6e-28 131.7 104 68.3
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-28 131.7 131 53.4
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 6.0e-28 129.8 131 52.7
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 6.0e-28 129.8 131 51.9
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 1.3e-27 128.6 440 28.4
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 4.3e-26 123.6 513 26.3
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 2.1e-25 121.3 104 64.4
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.6e-25 120.6 119 60.5
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-21 108.2 78 59.0
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.9e-19 100.5 80 63.8
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.1e-17 94.7 81 58.0
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 1.4e-16 92.0 192 35.4
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-16 91.7 88 52.3
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-15 89.0 98 52.0
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 2.0e-15 88.2 89 49.4
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 9.9e-15 85.9 64 71.9
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.1e-12 78.2 78 52.6
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 3.5e-12 77.4 81 46.9
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 6.7e-11 73.2 54 64.8
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 1.8e-08 65.1 128 38.3
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 3.1e-08 64.3 39 79.5


User provided reference genes

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