Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p007902 Quercus lobata HOM05D002872 ORTHO05D003204 2.2e-106 389.0 208 100.0
QL01p007916 Quercus lobata HOM05D002872 ORTHO05D003204 4.6e-19 99.0 72 80.6
Dinv01806 Davidia involucrata HOM05D002872 ORTHO05D003204 4.8e-16 89.0 69 72.5
Prupe.6G001300 Prunus persica HOM05D002872 ORTHO05D003204 1.8e-15 87.0 67 76.1
Manes.03G086300 Manihot esculenta HOM05D002872 ORTHO05D003204 2.4e-15 86.7 73 68.5
Cpa.g.sc119.19 Carica papaya HOM05D002872 ORTHO05D003204 9.0e-15 84.7 70 70.0
Potri.001G001300 Populus trichocarpa HOM05D002872 ORTHO05D003204 1.2e-14 84.3 69 69.6
CANSAT11G1709 Cannabis sativa HOM05D002872 ORTHO05D003204 2.0e-14 83.6 69 69.6
Haze_22912 Corylus avellana HOM05D002872 ORTHO05D003204 3.4e-14 82.8 69 71.0
TAR623G1141 Trochodendron aralioides HOM05D002872 ORTHO05D003204 3.4e-14 82.8 69 68.1
Atru.chr3.2058 Acer truncatum HOM05D002872 ORTHO05D003204 4.5e-14 82.4 73 64.4
Nn2g15900 Nelumbo nucifera HOM05D002872 ORTHO05D003204 4.5e-14 82.4 69 68.1
Thecc.09G205700 Theobroma cacao HOM05D002872 ORTHO05D003204 4.5e-14 82.4 69 68.1
Nitab4.5_0000890g0190 Nicotiana tabacum HOM05D002872 ORTHO05D003204 5.8e-14 82.0 69 69.6
ClCG03G014660 Citrullus lanatus HOM05D002872 ORTHO05D003204 7.6e-14 81.6 69 68.1
CsaV3_1G041510 Cucumis sativus L. HOM05D002872 ORTHO05D003204 7.6e-14 81.6 69 68.1
GSVIVG01025507001 Vitis vinifera HOM05D002872 ORTHO05D003204 7.6e-14 81.6 69 66.7
Actinidia00918 Actinidia chinensis HOM05D002872 ORTHO05D003204 9.9e-14 81.3 69 68.1
Eucgr.J01745 Eucalyptus grandis HOM05D002872 ORTHO05D003204 9.9e-14 81.3 68 67.6
Sed0004485 Sechium edule HOM05D002872 ORTHO05D003204 9.9e-14 81.3 69 66.7
Ciclev10016445m.g Citrus clementina HOM05D002872 ORTHO05D003204 1.3e-13 80.9 73 64.4
Cfa009531 Carpinus fangiana HOM05D002872 ORTHO05D003204 1.7e-13 80.5 69 68.1
PSO339G4532 Papaver somniferum HOM05D002872 ORTHO05D003204 2.9e-13 79.7 69 65.2
PSO384G4623 Papaver somniferum HOM05D002872 ORTHO05D003204 2.9e-13 79.7 69 65.2
MSTRG.12807 Avicennia marina HOM05D002872 ORTHO05D003204 3.8e-13 79.3 69 63.8
Solyc01g049960.4 Solanum lycopersicum HOM05D002872 ORTHO05D003204 3.8e-13 79.3 69 68.1
Sopen01g019280 Solanum pennellii HOM05D002872 ORTHO05D003204 3.8e-13 79.3 69 68.1
Duzib168G2058 Durio zibethinus HOM05D002872 ORTHO05D003204 4.9e-13 79.0 69 66.7
Hma1.2p1_0589F.1_g184710 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 4.9e-13 79.0 68 64.7
Hma1.2p1_0589F.1_g184720 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 4.9e-13 79.0 68 64.7
SalBow3G2375 Salvia bowleyana HOM05D002872 ORTHO05D003204 4.9e-13 79.0 70 61.4
Migut.N00530 Erythranthe guttata HOM05D002872 ORTHO05D003204 8.4e-13 78.2 69 65.2
COL.COLO4_35069 Corchorus olitorius HOM05D002872 ORTHO05D003204 1.9e-12 77.0 69 63.8
MD11G1001100 Malus domestica HOM05D002872 ORTHO05D003204 1.9e-12 77.0 67 67.2
Aa31LG5G11760 Aethionema arabicum HOM05D002872 ORTHO05D003204 2.4e-12 76.6 69 63.8
C01p22220 Brassica napus HOM05D002872 ORTHO05D003204 2.4e-12 76.6 69 63.8
BolC1t02152H Brassica oleracea HOM05D002872 ORTHO05D003204 2.4e-12 76.6 69 63.8
THA.LOC104811711 Tarenaya hassleriana HOM05D002872 ORTHO05D003204 2.4e-12 76.6 69 60.9
Cc01_g00260 Coffea canephora HOM05D002872 ORTHO05D003204 3.2e-12 76.3 69 63.8
Aqoxy1G00089 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 4.2e-12 75.9 67 65.7
Aqoxy386s003 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 4.2e-12 75.9 67 65.7
Carub.0007s1455 Capsella rubella HOM05D002872 ORTHO05D003204 4.2e-12 75.9 69 62.3
CARHR233960 Cardamine hirsuta HOM05D002872 ORTHO05D003204 4.2e-12 75.9 69 62.3
BcaC09g50695 Brassica carinata HOM05D002872 ORTHO05D003204 5.4e-12 75.5 69 62.3
Gohir.D13G214900 Gossypium hirsutum HOM05D002872 ORTHO05D003204 5.4e-12 75.5 69 63.8
Gorai.013G245200 Gossypium raimondii HOM05D002872 ORTHO05D003204 5.4e-12 75.5 69 63.8
AL7G26550 Arabidopsis lyrata HOM05D002872 ORTHO05D003204 7.1e-12 75.1 69 62.3
BcaNung02424 Brassica carinata HOM05D002872 ORTHO05D003204 7.1e-12 75.1 69 62.3
A01p17620 Brassica napus HOM05D002872 ORTHO05D003204 7.1e-12 75.1 69 62.3
A03p56670 Brassica napus HOM05D002872 ORTHO05D003204 7.1e-12 75.1 68 63.2
BraA03t14737Z Brassica rapa HOM05D002872 ORTHO05D003204 7.1e-12 75.1 68 63.2
AUR62042622 Chenopodium quinoa HOM05D002872 ORTHO05D003204 7.1e-12 75.1 69 65.2
BraA01t01715Z Brassica rapa HOM05D002872 ORTHO05D003204 9.3e-12 74.7 69 62.3
CSS0011772 Camellia sinensis var. sinensis HOM05D002872 ORTHO05D003204 9.3e-12 74.7 70 62.9
CSS0014074 Camellia sinensis var. sinensis HOM05D002872 ORTHO05D003204 9.3e-12 74.7 70 62.9
MBI19_g09318_MAGBIO Magnolia biondii HOM05D002872 ORTHO05D003204 9.3e-12 74.7 69 58.0
Oeu018898.1 Olea europaea HOM05D002872 ORTHO05D003204 9.3e-12 74.7 68 63.2
Sc16g0012250 Simmondsia chinensis HOM05D002872 ORTHO05D003204 9.3e-12 74.7 69 63.8
SGA_v2.0_scaffold6G03331 Striga asiatica HOM05D002872 ORTHO05D003204 1.6e-11 73.9 69 60.9
AT4G26410 Arabidopsis thaliana HOM05D002872 ORTHO05D003204 2.1e-11 73.6 69 60.9
C07p54870 Brassica napus HOM05D002872 ORTHO05D003204 2.1e-11 73.6 68 61.8
Gohir.A13G211000 Gossypium hirsutum HOM05D002872 ORTHO05D003204 2.1e-11 73.6 69 62.3
Sp7g24310 Schrenkiella parvula HOM05D002872 ORTHO05D003204 2.1e-11 73.6 73 57.5
Peaxi162Scf00186g01511 Petunia axillaris HOM05D002872 ORTHO05D003204 2.7e-11 73.2 69 60.9
RcHm_v2.0_Chr5g0084061 Rosa chinensis HOM05D002872 ORTHO05D003204 2.7e-11 73.2 70 60.0
BolC7t45975H Brassica oleracea HOM05D002872 ORTHO05D003204 3.5e-11 72.8 68 61.8
AUR62040893 Chenopodium quinoa HOM05D002872 ORTHO05D003204 3.5e-11 72.8 69 63.8
Lj2A888G14 Lonicera japonica HOM05D002872 ORTHO05D003204 3.5e-11 72.8 69 62.3
BcaC06g32751 Brassica carinata HOM05D002872 ORTHO05D003204 4.6e-11 72.4 69 60.9
Lj4g0027888 Lotus japonicus HOM05D002872 ORTHO05D003204 7.9e-11 71.6 69 60.9
VMungo0251G2931 Vigna mungo HOM05D002872 ORTHO05D003204 1.0e-10 71.2 69 58.0
CiPaw.13G179400 Carya illinoinensis HOM05D002872 ORTHO05D003204 1.8e-10 70.5 69 63.8
CDE08G0031 Ceratophyllum demersum HOM05D002872 ORTHO05D003204 1.8e-10 70.5 73 54.8
FAN11G0810 Fragaria x ananassa HOM05D002872 ORTHO05D003204 1.8e-10 70.5 70 61.4
FAN21G2326 Fragaria x ananassa HOM05D002872 ORTHO05D003204 1.8e-10 70.5 70 61.4
Glyma.20G025000 Glycine max HOM05D002872 ORTHO05D003204 1.8e-10 70.5 69 56.5
FvH4_3g45950 Fragaria vesca HOM05D002872 ORTHO05D003204 3.0e-10 69.7 70 58.6
Phvul.002G101500 Phaseolus vulgaris HOM05D002872 ORTHO05D003204 3.9e-10 69.3 69 56.5
ATR0068G080 Amborella trichopoda HOM05D002872 ORTHO05D003204 6.7e-10 68.6 69 56.5
FAN16G3031 Fragaria x ananassa HOM05D002872 ORTHO05D003204 8.7e-10 68.2 70 57.1
arahy.Tifrunner.gnm1.ann1.BJ2ABN Arachis hypogaea HOM05D002872 ORTHO05D003204 1.1e-09 67.8 69 56.5
arahy.Tifrunner.gnm1.ann1.WYYM4H Arachis hypogaea HOM05D002872 ORTHO05D003204 1.1e-09 67.8 69 56.5
Ca_18794_v3 Cicer arietinum L. HOM05D002872 ORTHO05D003204 1.1e-09 67.8 69 55.1
Glyma.07G225100 Glycine max HOM05D002872 ORTHO05D003204 1.1e-09 67.8 69 55.1
Medtr4g083250 Medicago truncatula HOM05D002872 ORTHO05D003204 1.5e-09 67.4 69 55.1
TPR.G34033 Trifolium pratense HOM05D002872 ORTHO05D003204 1.9e-09 67.0 69 55.1
Psat7g134440 Pisum sativum HOM05D002872 ORTHO05D003204 4.3e-09 65.9 69 53.6
DCAR_001960 Daucus carota HOM05D002872 ORTHO05D003204 7.4e-09 65.1 66 57.6
Lsat_1_v5_gn_6_56180 Lactuca sativa HOM05D002872 ORTHO05D003204 2.8e-08 63.2 69 55.1
TWI34G0676 Tripterygium wilfordii HOM05D002872 ORTHO05D003204 3.7e-08 62.8 66 56.1
Thhalv10026011m.g Eutrema salsugineum HOM05D002872 ORTHO05D003204 8.1e-08 61.6 62 56.5
ECA233G5319 Erigeron canadensis HOM05D000141 ORTHO05D004038 4.0e-07 59.3 66 54.5
Lalb_Chr09g0328951 Lupinus albus HOM05D002872 ORTHO05D003204 5.3e-07 58.9 67 50.7
SEGI_35371 Sequoiadendron giganteum HOM05D002872 ORTHO05D003204 5.3e-07 58.9 68 54.4
MELO3C015562.2 Cucumis melo HOM05D002872 ORTHO05D003204 9.0e-07 58.2 40 77.5
Nitab4.5_0000075g0190 Nicotiana tabacum HOM05D002872 ORTHO05D003204 3.4e-06 56.2 48 70.8


User provided reference genes

Program Settings