Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 5.1e-266 920.6 499 100.0
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.0e-157 560.8 486 66.9
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 3.2e-143 512.7 438 67.8
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 3.4e-129 466.1 475 57.7
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.0e-128 464.5 473 59.8
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 5.0e-128 462.2 489 56.9
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 1.9e-127 460.3 489 55.0
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 1.9e-127 460.3 478 58.6
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.0e-125 453.0 494 56.3
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.3e-123 447.6 494 55.1
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 2.2e-123 446.8 475 56.2
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 9.1e-122 441.4 484 55.0
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.7e-120 437.2 483 55.3
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 5.0e-120 435.6 517 53.6
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.1e-119 434.5 483 55.1
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.9e-119 433.7 459 54.0
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 4.7e-118 429.1 459 55.3
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.1e-116 424.5 485 55.9
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 6.3e-115 418.7 465 55.9
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.4e-114 417.5 485 53.2
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 1.0e-112 411.4 540 50.4
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 1.3e-112 411.0 488 50.4
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 3.6e-110 402.9 473 53.5
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 3.0e-109 399.8 484 52.5
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.7e-107 394.0 478 52.9
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 4.8e-107 392.5 471 53.1
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.1e-106 391.3 463 52.5
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 1.4e-106 391.0 479 52.8
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 1.8e-106 390.6 462 53.5
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 5.3e-106 389.0 485 49.5
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 7.0e-106 388.7 476 51.1
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.6e-105 386.7 460 52.8
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 4.5e-105 386.0 484 51.7
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 5.9e-105 385.6 476 50.6
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 3.8e-104 382.9 486 49.2
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 6.5e-104 382.1 510 49.2
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.9e-103 380.6 338 65.1
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.9e-103 380.6 429 55.2
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 9.4e-103 378.3 453 52.3
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 4.0e-101 372.9 489 48.3
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.2e-100 371.3 460 52.4
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 4.4e-100 369.4 470 50.0
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 1.3e-99 367.9 442 53.8
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 6.3e-99 365.5 490 50.4
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 8.3e-99 365.2 476 49.8
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.1e-98 364.8 472 49.6
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 3.1e-98 363.2 462 50.9
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 9.1e-98 361.7 469 49.7
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.7e-97 360.1 463 49.5
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.0e-96 358.2 516 46.7
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 3.8e-96 356.3 464 49.6
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.0e-96 355.9 544 46.1
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 8.5e-96 355.1 437 51.9
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 1.1e-95 354.8 490 47.8
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 1.1e-95 354.8 460 50.2
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.2e-94 351.3 548 45.4
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.6e-94 350.9 467 47.1
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 2.7e-94 350.1 464 48.5
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 1.5e-92 344.4 461 49.2
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 7.5e-92 342.0 307 66.4
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 6.3e-91 339.0 487 46.2
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 6.3e-91 339.0 470 46.4
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.4e-90 337.0 463 46.0
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 4.1e-90 336.3 479 47.0
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 4.1e-90 336.3 460 48.9
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 5.4e-90 335.9 497 45.9
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 1.7e-88 330.9 472 45.8
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 6.6e-88 328.9 441 49.2
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 6.6e-88 328.9 476 46.0
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 3.3e-87 326.6 291 62.9
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 8.0e-86 322.0 498 44.8
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 2.3e-85 320.5 383 54.8
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 5.2e-85 319.3 467 44.8
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 6.8e-85 318.9 469 44.3
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 6.8e-85 318.9 402 47.8
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.0e-84 317.4 479 46.6
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.0e-84 317.4 479 46.6
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 7.5e-84 315.5 481 43.9
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.8e-82 310.8 399 47.4
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 7.0e-82 308.9 475 43.8
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 9.2e-82 308.5 486 45.7
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 1.2e-81 308.1 464 46.1
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 5.0e-80 302.8 488 43.6
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 1.1e-79 301.6 470 44.0
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 2.8e-78 297.0 360 51.1
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.8e-77 294.3 451 46.1
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.5e-76 291.2 503 41.9
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 2.0e-76 290.8 464 43.8
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 8.3e-75 285.4 247 66.0
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 1.1e-74 285.0 229 68.6
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 1.4e-74 284.6 486 43.0
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 3.2e-74 283.5 477 43.0
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 4.1e-74 283.1 507 40.6
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 5.4e-74 282.7 472 43.6
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 3.5e-73 280.0 481 40.3
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 3.0e-72 276.9 465 43.0
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.9e-72 276.6 218 72.5
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 8.6e-72 275.4 493 41.0
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 2.5e-71 273.9 462 44.4
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 7.3e-71 272.3 464 42.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.1e-69 268.5 391 44.2
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 3.1e-69 266.9 360 46.7
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 8.9e-69 265.4 455 43.3
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 5.8e-68 262.7 415 45.8
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.7e-67 261.2 490 39.8
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 1.4e-66 258.1 423 43.3
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 4.1e-66 256.5 467 39.4
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 4.1e-66 256.5 355 47.9
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 6.0e-65 252.7 464 40.1
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 1.5e-63 248.1 401 41.6
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 2.5e-63 247.3 214 62.1
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.8e-62 243.8 317 47.6
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 4.9e-59 233.0 423 40.7
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 1.5e-55 221.5 486 38.1
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.6e-54 218.0 320 46.2
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 6.8e-53 212.6 459 36.8
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 1.2e-52 211.8 172 65.1
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 9.3e-50 202.2 418 37.6
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 3.9e-48 196.8 452 36.5
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 3.9e-48 196.8 452 36.5
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 8.1e-46 189.1 472 37.1
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 4.4e-44 183.3 198 53.0
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 2.1e-38 164.5 327 38.5
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.4e-37 161.8 295 37.6
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 2.6e-36 157.5 505 29.5
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 4.6e-33 146.7 265 38.9
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 8.1e-30 136.0 208 44.7
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 6.9e-29 132.9 160 54.4
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.0e-28 131.3 160 53.8
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.2e-27 127.9 163 44.8
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 7.4e-23 112.8 140 51.4
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.8e-21 108.2 85 68.2
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.1e-21 107.5 261 34.1
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 3.2e-10 70.9 122 36.1
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.3e-08 64.7 91 48.4
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 8.8e-08 62.8 88 43.2
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 9.7e-07 59.3 135 36.3


User provided reference genes

Program Settings