Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 9.2e-104 380.2 185 100.0
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 2.3e-94 349.0 185 89.2
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 7.3e-93 344.0 185 84.9
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 1.6e-92 342.8 185 87.6
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 3.6e-92 341.7 185 84.3
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 3.6e-92 341.7 185 84.3
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 3.6e-92 341.7 185 85.9
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 3.6e-92 341.7 185 84.9
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 8.1e-92 340.5 185 84.9
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 1.1e-91 340.1 185 87.0
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 1.4e-91 339.7 185 85.9
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 1.4e-91 339.7 185 84.3
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.8e-91 339.3 185 84.9
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 2.3e-91 339.0 185 84.3
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 2.3e-91 339.0 185 84.9
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 2.3e-91 339.0 185 84.9
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 3.1e-91 338.6 185 83.8
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 3.1e-91 338.6 185 84.3
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 5.2e-91 337.8 185 82.7
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 5.2e-91 337.8 185 84.9
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 6.8e-91 337.4 185 84.3
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 6.8e-91 337.4 185 84.9
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 6.8e-91 337.4 185 83.8
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 1.5e-90 336.3 182 85.2
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.5e-90 336.3 185 85.4
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 1.5e-90 336.3 183 87.4
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 2.0e-90 335.9 184 84.8
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 2.6e-90 335.5 185 83.8
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 2.6e-90 335.5 185 83.2
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 2.6e-90 335.5 185 83.8
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 4.4e-90 334.7 184 83.7
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 7.6e-90 334.0 185 83.8
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 9.9e-90 333.6 184 84.8
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 9.9e-90 333.6 185 82.7
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 9.9e-90 333.6 185 82.7
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 9.9e-90 333.6 185 83.8
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 1.7e-89 332.8 185 82.7
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 1.7e-89 332.8 185 82.7
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 1.7e-89 332.8 184 83.2
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 2.2e-89 332.4 185 82.7
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 2.9e-89 332.0 184 83.2
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 3.8e-89 331.6 184 84.2
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 3.8e-89 331.6 184 84.2
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 3.8e-89 331.6 185 83.8
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 4.9e-89 331.3 184 83.2
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 6.4e-89 330.9 185 82.7
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 6.4e-89 330.9 184 83.7
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 6.4e-89 330.9 185 84.9
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 8.4e-89 330.5 185 82.7
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 8.4e-89 330.5 185 82.2
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 8.4e-89 330.5 185 82.7
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 8.4e-89 330.5 185 82.7
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 8.4e-89 330.5 185 83.8
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 1.9e-88 329.3 185 81.6
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.9e-88 329.3 185 82.7
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 2.4e-88 328.9 187 81.8
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.4e-88 328.9 185 81.6
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 3.2e-88 328.6 185 82.7
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 3.2e-88 328.6 184 84.2
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 4.1e-88 328.2 184 82.1
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 4.1e-88 328.2 184 82.6
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 5.4e-88 327.8 183 82.0
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 5.4e-88 327.8 184 82.6
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 7.1e-88 327.4 185 82.2
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 7.1e-88 327.4 187 81.3
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 7.1e-88 327.4 182 81.9
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 7.1e-88 327.4 184 82.6
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 7.1e-88 327.4 182 81.9
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 9.2e-88 327.0 184 83.7
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.2e-87 326.6 184 82.6
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 1.2e-87 326.6 183 82.0
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.2e-87 326.6 185 82.2
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 1.6e-87 326.2 183 81.4
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 1.6e-87 326.2 183 81.4
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.1e-87 325.9 185 81.6
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 2.7e-87 325.5 183 81.4
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 2.7e-87 325.5 187 79.7
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 2.7e-87 325.5 184 83.2
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 3.5e-87 325.1 185 82.2
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 4.6e-87 324.7 183 80.9
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 4.6e-87 324.7 185 80.0
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 6.0e-87 324.3 180 81.7
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 6.0e-87 324.3 187 80.7
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 7.8e-87 323.9 180 81.1
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 3.9e-86 321.6 178 83.7
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 5.1e-86 321.2 180 80.6
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 8.6e-86 320.5 180 80.0
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 8.6e-86 320.5 180 80.0
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 8.6e-86 320.5 180 80.0
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 1.9e-85 319.3 180 79.4
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 2.5e-85 318.9 180 79.4
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 4.3e-85 318.2 184 79.3
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 4.3e-85 318.2 184 80.4
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 5.6e-85 317.8 180 79.4
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 5.6e-85 317.8 182 79.7
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 9.6e-85 317.0 180 80.6
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 9.6e-85 317.0 180 80.6
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.2e-84 316.6 184 79.9
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 2.8e-84 315.5 185 81.1
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 1.8e-83 312.8 185 77.3
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 2.4e-83 312.4 172 83.1
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 8.9e-83 310.5 185 75.1
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 3.4e-82 308.5 185 78.4
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 4.4e-82 308.1 185 79.5
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 9.9e-82 307.0 185 78.9
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 1.4e-80 303.1 186 77.4
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 1.2e-79 300.1 181 80.7
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 2.7e-79 298.9 186 76.3
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 4.6e-79 298.1 184 74.5
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 7.8e-79 297.4 185 76.8
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 7.8e-79 297.4 185 76.2
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 3.0e-78 295.4 185 75.7
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 5.6e-77 291.2 185 74.6
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 5.6e-77 291.2 185 74.6
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 1.6e-76 289.7 185 73.5
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 2.8e-76 288.9 173 75.7
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 3.6e-76 288.5 185 73.5
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 6.2e-76 287.7 185 73.5
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.8e-75 286.2 185 71.4
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 3.0e-70 268.9 185 66.5
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 7.9e-63 244.2 180 57.2
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.3e-57 226.9 177 55.4
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 1.7e-57 226.5 187 56.1
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 4.2e-56 221.9 180 55.6
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 2.1e-55 219.5 172 62.8
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 5.7e-53 211.5 187 51.9
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 5.7e-53 211.5 183 49.7
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 2.5e-45 186.0 151 57.0
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 1.6e-44 183.3 180 52.8
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 2.6e-37 159.5 89 84.3
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 2.8e-36 156.0 172 50.0
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 7.7e-26 121.3 88 64.8
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 2.5e-24 116.3 154 37.7
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 2.0e-21 106.7 54 87.0
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 9.5e-08 61.2 88 34.1


User provided reference genes

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