Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 3.2e-38 161.4 89 100.0
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 6.7e-36 153.7 89 94.4
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 1.3e-31 139.4 87 74.7
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 3.0e-28 128.3 73 78.1
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 9.7e-27 123.2 73 75.3
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 1.3e-26 122.9 73 76.7
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 3.7e-26 121.3 72 77.8
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 6.3e-26 120.6 74 71.6
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 8.3e-26 120.2 74 77.0
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 8.3e-26 120.2 74 75.7
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 3.1e-25 118.2 73 74.0
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 3.1e-25 118.2 72 76.4
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 4.1e-25 117.9 73 72.6
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 5.3e-25 117.5 71 76.1
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 5.3e-25 117.5 74 75.7
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 5.3e-25 117.5 74 68.9
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 7.0e-25 117.1 71 74.6
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 2.0e-24 115.5 74 75.7
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 4.5e-24 114.4 72 70.8
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 4.5e-24 114.4 72 70.8
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 7.7e-24 113.6 71 74.6
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 1.3e-23 112.8 74 73.0
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 1.7e-23 112.5 70 74.3
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 2.2e-23 112.1 73 69.9
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 2.2e-23 112.1 71 71.8
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 2.2e-23 112.1 71 71.8
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 2.9e-23 111.7 73 65.8
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 3.8e-23 111.3 73 65.8
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 3.8e-23 111.3 63 81.0
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 8.5e-23 110.2 71 73.2
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 8.5e-23 110.2 70 77.1
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 1.1e-22 109.8 71 74.6
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 1.5e-22 109.4 72 72.2
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 1.5e-22 109.4 74 67.6
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 2.5e-22 108.6 71 71.8
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 3.2e-22 108.2 70 71.4
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 3.2e-22 108.2 70 72.9
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 3.2e-22 108.2 72 72.2
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 5.5e-22 107.5 73 69.9
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 1.2e-21 106.3 73 67.1
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 2.7e-21 105.1 74 66.2
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 2.7e-21 105.1 72 70.8
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 8.0e-21 103.6 71 71.8
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 1.0e-20 103.2 70 72.9
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 1.4e-20 102.8 73 68.5
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 1.4e-20 102.8 72 68.1
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 1.4e-20 102.8 74 62.2
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 2.3e-20 102.1 72 68.1
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 2.3e-20 102.1 73 61.6
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 3.0e-20 101.7 74 60.8
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 3.0e-20 101.7 74 60.8
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 3.0e-20 101.7 71 64.8
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 4.0e-20 101.3 72 68.1
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 4.0e-20 101.3 71 69.0
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 4.0e-20 101.3 84 63.1
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 4.0e-20 101.3 74 60.8
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 5.2e-20 100.9 73 60.3
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 8.8e-20 100.1 72 66.7
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 1.2e-19 99.8 72 66.7
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 2.0e-19 99.0 72 66.7
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 2.0e-19 99.0 70 61.4
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 2.0e-19 99.0 65 69.2
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 5.7e-19 97.4 72 65.3
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 5.7e-19 97.4 72 65.3
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 5.7e-19 97.4 71 63.4
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 5.7e-19 97.4 71 63.4
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 7.5e-19 97.1 74 60.8
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 1.7e-18 95.9 72 65.3
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 4.8e-18 94.4 71 64.8
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 4.5e-16 87.8 77 58.4
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 4.5e-16 87.8 57 73.7
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 5.9e-16 87.4 70 55.7
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 2.3e-15 85.5 71 62.0
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 5.0e-15 84.3 57 68.4
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 8.6e-15 83.6 52 71.2
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 8.6e-15 83.6 52 71.2
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 3.3e-14 81.6 72 56.9
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 4.7e-13 77.8 70 47.1
SGA_v2.0_scaffold7G04151 Striga asiatica HOM05D000252 ORTHO05D000307 1.3e-10 69.7 42 71.4
HanXRQChr04g0118971 Helianthus annuus HOM05D007721 ORTHO05D009811 2.0e-08 62.4 46 63.0
ECA248G3328 Erigeron canadensis HOM05D000152 ORTHO05D001046 8.6e-07 57.0 43 60.5
TWI34G0772 Tripterygium wilfordii HOM05D007721 ORTHO05D009811 1.1e-06 56.6 40 70.0
SGA_v2.0_scaffold114G31816 Striga asiatica HOM05D007721 ORTHO05D009811 2.5e-06 55.5 40 62.5
Aa31LG3G11430 Aethionema arabicum HOM05D007721 ORTHO05D009811 4.3e-06 54.7 45 57.8


User provided reference genes

Program Settings