Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 5.6e-40 167.5 110 100.0
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 4.4e-37 157.9 110 79.1
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 2.4e-22 109.0 109 62.4
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 5.2e-22 107.8 110 60.9
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 6.4e-20 100.9 111 55.9
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 8.4e-20 100.5 110 56.4
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 1.6e-18 96.3 107 53.3
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 3.0e-17 92.0 111 68.5
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.9e-16 89.4 111 47.7
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.2e-15 86.7 109 55.0
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.6e-15 86.3 109 49.5
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 2.1e-15 85.9 108 51.9
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.6e-15 85.1 111 63.1
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 6.2e-15 84.3 110 47.3
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 8.1e-15 84.0 108 51.9
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 8.1e-15 84.0 112 48.2
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 8.1e-15 84.0 108 55.6
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 8.1e-15 84.0 109 52.3
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.4e-14 83.2 110 51.8
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.4e-14 83.2 110 61.8
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 1.8e-14 82.8 108 49.1
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 1.8e-14 82.8 112 47.3
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.8e-14 82.8 109 51.4
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 2.4e-14 82.4 109 62.4
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.4e-14 82.4 109 62.4
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 4.0e-14 81.6 113 53.1
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 5.2e-14 81.3 109 50.5
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 5.2e-14 81.3 109 51.4
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 5.2e-14 81.3 109 46.8
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 6.9e-14 80.9 110 47.3
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 9.0e-14 80.5 114 59.6
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 9.0e-14 80.5 114 59.6
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 1.2e-13 80.1 108 52.8
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.2e-13 80.1 106 47.2
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.2e-13 80.1 110 64.5
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.5e-13 79.7 111 49.5
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.5e-13 79.7 109 62.4
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 2.6e-13 79.0 111 45.9
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 3.4e-13 78.6 110 50.9
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 3.4e-13 78.6 107 59.8
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 4.4e-13 78.2 111 57.7
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 5.8e-13 77.8 114 45.6
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 7.6e-13 77.4 112 65.2
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 7.6e-13 77.4 113 44.2
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 9.9e-13 77.0 112 62.5
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 9.9e-13 77.0 110 48.2
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 9.9e-13 77.0 110 48.2
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 9.9e-13 77.0 112 46.4
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 9.9e-13 77.0 112 46.4
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 9.9e-13 77.0 112 46.4
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 1.3e-12 76.6 115 46.1
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 1.3e-12 76.6 108 48.1
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 1.7e-12 76.3 114 65.8
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.9e-12 75.5 109 46.8
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 2.9e-12 75.5 107 62.6
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 2.9e-12 75.5 110 46.4
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 2.9e-12 75.5 109 46.8
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 2.9e-12 75.5 110 44.5
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 3.8e-12 75.1 111 46.8
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 3.8e-12 75.1 109 46.8
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 4.9e-12 74.7 114 57.9
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 4.9e-12 74.7 109 46.8
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 4.9e-12 74.7 108 48.1
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 6.4e-12 74.3 113 46.0
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 6.4e-12 74.3 109 46.8
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 6.4e-12 74.3 111 48.6
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 6.4e-12 74.3 109 45.9
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 8.4e-12 73.9 112 43.8
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 1.1e-11 73.6 114 62.3
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 1.1e-11 73.6 109 45.0
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 1.4e-11 73.2 107 40.2
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.4e-11 73.2 108 41.7
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 1.9e-11 72.8 110 46.4
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.4e-11 72.4 110 43.6
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 2.4e-11 72.4 113 46.0
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 3.2e-11 72.0 112 47.3
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 3.2e-11 72.0 108 45.4
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 3.2e-11 72.0 111 46.8
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 3.2e-11 72.0 107 45.8
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 4.2e-11 71.6 111 45.9
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 5.4e-11 71.2 109 45.0
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 7.1e-11 70.9 109 59.6
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 7.1e-11 70.9 107 43.9
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 7.1e-11 70.9 110 47.3
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 9.3e-11 70.5 109 45.0
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 9.3e-11 70.5 111 43.2
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 9.3e-11 70.5 117 41.0
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.6e-10 69.7 107 44.9
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.1e-10 69.3 109 45.9
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 2.7e-10 68.9 109 45.9
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 3.5e-10 68.6 112 47.3
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.5e-10 68.6 109 45.9
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 4.6e-10 68.2 108 43.5
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 6.0e-10 67.8 37 81.1
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 6.0e-10 67.8 39 82.1
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 7.8e-10 67.4 40 77.5
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 7.8e-10 67.4 111 45.9
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.0e-09 67.0 110 43.6
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.0e-09 67.0 110 43.6
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.0e-09 67.0 110 43.6
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.3e-09 66.6 108 41.7
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.3e-09 66.6 108 42.6
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 1.7e-09 66.2 113 41.6
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.7e-09 66.2 96 42.7
Nitab4.5_0000570g0060 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.3e-09 65.9 113 55.8
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.3e-09 65.9 110 57.3
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 3.0e-09 65.5 108 41.7
QL01p004463 Quercus lobata HOM05D004673 ORTHO05D005596 3.0e-09 65.5 41 82.9
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 3.0e-09 65.5 110 41.8
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 5.1e-09 64.7 108 44.4
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 5.1e-09 64.7 112 43.8
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 6.6e-09 64.3 111 57.7
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 6.6e-09 64.3 108 44.4
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 6.6e-09 64.3 115 41.7
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 8.7e-09 63.9 108 41.7
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 8.7e-09 63.9 107 41.1
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 8.7e-09 63.9 113 40.7
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.1e-08 63.5 113 54.0
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.1e-08 63.5 108 44.4
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 2.5e-08 62.4 118 39.0
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 4.3e-08 61.6 104 40.4
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 5.6e-08 61.2 108 42.6
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 5.6e-08 61.2 108 42.6
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 5.6e-08 61.2 95 44.2
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 7.3e-08 60.8 94 42.6
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 9.6e-08 60.5 112 43.8
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 9.6e-08 60.5 106 41.5
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 1.3e-07 60.1 108 39.8
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 1.3e-07 60.1 110 48.2
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 1.3e-07 60.1 108 39.8
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 1.3e-07 60.1 108 39.8
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 1.6e-07 59.7 38 71.1
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 1.6e-07 59.7 108 38.9
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 2.1e-07 59.3 108 39.8
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 2.1e-07 59.3 39 69.2
Solyc12g099650.2 Solanum lycopersicum HOM05D004268 ORTHO05D004958 2.1e-07 59.3 111 50.5
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 2.8e-07 58.9 108 38.0
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 2.8e-07 58.9 39 66.7
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 4.8e-07 58.2 108 41.7
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 6.2e-07 57.8 109 43.1
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 6.2e-07 57.8 107 40.2
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 6.2e-07 57.8 107 40.2
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.1e-06 57.0 107 38.3
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 1.8e-06 56.2 108 48.1
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.4e-06 55.8 108 38.0
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 2.4e-06 55.8 108 38.9
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.4e-06 55.8 86 41.9
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 3.1e-06 55.5 108 51.9
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 4.0e-06 55.1 32 68.8
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 5.3e-06 54.7 39 64.1
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 6.9e-06 54.3 97 44.3


User provided reference genes

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