Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 0.0e+00 1152.9 603 100.0
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 0.0e+00 1124.0 628 95.1
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 4.5e-184 648.7 547 69.7
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 3.7e-178 629.0 537 69.1
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 9.4e-174 614.4 515 69.9
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 2.9e-159 566.2 535 61.3
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 6.1e-157 558.5 532 62.8
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 2.9e-154 549.7 538 61.5
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 6.6e-151 538.5 403 76.2
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.2e-147 527.7 530 59.8
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.2e-147 527.7 522 59.0
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 8.3e-146 521.5 514 60.1
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 1.9e-145 520.4 532 59.2
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 2.4e-145 520.0 535 60.4
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 2.4e-145 520.0 532 58.8
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 2.1e-144 516.9 513 59.1
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 5.6e-142 508.8 525 57.9
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.6e-141 506.1 532 57.7
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 1.1e-140 504.6 521 60.3
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.1e-140 504.6 532 59.0
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 1.8e-140 503.8 522 58.0
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 1.8e-140 503.8 529 57.8
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 2.2e-138 496.9 522 58.0
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.1e-137 494.6 526 59.1
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 3.5e-136 489.6 529 56.3
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 6.0e-136 488.8 529 57.7
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 2.3e-135 486.9 517 57.3
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 3.0e-135 486.5 537 57.2
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 5.8e-131 472.2 537 56.4
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 5.8e-131 472.2 529 55.4
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 9.9e-131 471.5 529 55.6
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.3e-130 471.1 536 56.5
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.8e-130 469.5 567 53.6
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 1.6e-128 464.2 533 55.9
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 2.1e-128 463.8 538 53.9
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 3.5e-128 463.0 534 56.4
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.3e-125 454.5 512 53.3
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 4.8e-125 452.6 523 55.1
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.6e-123 446.8 565 53.1
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 4.4e-123 446.0 474 57.2
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 4.4e-123 446.0 474 57.2
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 1.3e-119 434.5 529 52.9
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 8.7e-119 431.8 480 56.0
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 7.3e-118 428.7 549 53.6
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 3.1e-116 423.3 478 57.9
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 9.0e-116 421.8 522 51.1
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.5e-115 421.0 563 49.0
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 2.0e-115 420.6 512 53.1
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 3.5e-112 409.8 526 51.1
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 4.6e-112 409.5 530 51.7
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.8e-109 399.4 482 55.4
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 2.4e-108 397.1 424 55.4
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 2.4e-108 397.1 570 47.5
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.2e-107 394.8 530 51.1
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 2.0e-107 394.0 541 49.2
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 7.6e-107 392.1 541 49.7
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 4.2e-105 386.3 523 49.1
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 2.1e-104 384.0 578 46.0
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 3.0e-103 380.2 440 54.1
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.9e-103 379.8 407 57.5
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 6.7e-103 379.0 535 48.6
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 1.1e-102 378.3 535 49.9
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 4.3e-102 376.3 588 46.8
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.0e-98 365.2 535 48.2
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 1.9e-97 360.9 534 47.6
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 1.9e-97 360.9 460 51.5
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 2.5e-97 360.5 525 47.6
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 2.5e-97 360.5 508 48.4
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.2e-96 358.2 363 58.1
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 8.7e-95 352.1 484 49.6
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 3.7e-93 346.7 589 44.1
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 6.9e-92 342.4 591 42.6
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 2.6e-91 340.5 527 45.7
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 3.4e-91 340.1 548 45.3
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 1.4e-89 334.7 442 50.5
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 2.7e-88 330.5 444 50.0
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 2.7e-88 330.5 502 43.4
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 4.6e-88 329.7 514 44.7
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 2.0e-86 324.3 520 45.2
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 3.3e-86 323.6 531 43.5
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 3.7e-85 320.1 518 44.8
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.4e-84 318.2 577 42.3
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.4e-84 318.2 486 45.9
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.6e-83 313.9 317 62.5
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 2.6e-83 313.9 529 44.0
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 7.7e-83 312.4 560 44.3
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.1e-81 308.5 604 41.6
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 3.6e-80 303.5 589 41.9
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 3.0e-79 300.4 549 41.9
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 2.6e-78 297.4 531 42.9
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 4.4e-78 296.6 518 41.9
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 4.4e-78 296.6 504 43.8
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 4.4e-78 296.6 520 42.7
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 4.5e-75 286.6 509 42.6
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 3.2e-73 280.4 535 38.3
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 6.7e-71 272.7 534 40.8
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.5e-70 271.6 605 38.5
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 5.7e-70 269.6 521 39.2
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 4.8e-69 266.5 587 39.0
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 3.1e-68 263.8 505 39.8
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 1.2e-64 251.9 523 38.0
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 1.6e-64 251.5 559 35.8
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 2.7e-64 250.8 507 40.2
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 4.0e-63 246.9 539 37.1
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 5.2e-63 246.5 514 37.9
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 2.8e-61 240.7 455 39.6
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 1.4e-60 238.4 533 35.8
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 1.7e-58 231.5 495 38.0
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 3.8e-58 230.3 496 37.3
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 2.5e-57 227.6 506 38.3
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 1.6e-56 224.9 504 38.3
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 3.6e-56 223.8 506 38.3
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 2.0e-54 218.0 522 36.4
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 1.4e-52 211.8 506 37.5
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 7.0e-52 209.5 499 34.5
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 1.1e-49 202.2 494 35.4
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 1.2e-48 198.7 494 35.4
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 4.7e-48 196.8 304 47.0
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 6.1e-48 196.4 511 36.2
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.8e-47 194.9 494 34.4
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 3.0e-47 194.1 506 36.2
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 4.0e-47 193.7 494 34.4
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 6.8e-47 193.0 346 43.6
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.2e-43 182.2 435 36.8
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.7e-43 181.0 286 47.9
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 7.8e-43 179.5 126 77.0
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.7e-42 178.3 307 45.9
QL10p038631 Quercus lobata HOM05D001846 ORTHO05D005785 4.3e-41 173.7 107 85.0
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 4.3e-41 173.7 575 31.1
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 2.3e-39 167.9 496 32.3
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 5.2e-39 166.8 199 52.8
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.2e-32 145.6 288 41.3
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.2e-32 145.6 134 56.0
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 4.7e-32 143.7 151 57.6
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 8.1e-32 142.9 260 38.5
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.4e-31 142.1 201 44.8
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 2.3e-31 141.4 392 31.1
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 3.4e-22 110.9 263 34.6
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.2e-21 108.2 190 37.9
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 3.9e-18 97.4 363 29.2
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 1.6e-11 75.5 239 33.1
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 4.6e-11 73.9 187 31.6
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.3e-10 71.6 82 53.7
Pp3c6_6740 Physcomitrium patens HOM05D019331 ORTHO05D026050 8.1e-08 63.2 351 23.4
SEGI_28173 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 3.1e-07 61.2 213 25.8
unitig_62.g23880 Utricularia gibba HOM05D001846 ORTHO05D005785 3.1e-07 61.2 159 30.8
QL04p070512 Quercus lobata HOM05D008417 ORTHO05D010741 9.0e-07 59.7 78 41.0
Mapoly0001s0089 Marchantia polymorpha HOM05D001846 ORTHO05D005785 1.5e-06 58.9 372 25.3


User provided reference genes

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