Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 3.2e-133 478.8 312 100.0
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 5.0e-102 375.2 184 93.5
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 6.1e-100 368.2 183 92.9
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.4e-99 367.1 183 92.9
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 4.0e-99 365.5 184 90.2
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 4.0e-99 365.5 184 89.7
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 6.7e-99 364.8 183 91.3
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.6e-98 362.8 184 89.7
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 2.6e-98 362.8 183 91.3
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 2.2e-97 359.8 183 90.2
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 2.8e-97 359.4 183 90.2
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 3.7e-97 359.0 183 89.6
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 6.3e-97 358.2 183 89.6
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 6.3e-97 358.2 183 89.6
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 6.3e-97 358.2 184 89.1
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 8.2e-97 357.8 182 89.0
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 5.3e-96 355.1 183 89.6
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 5.3e-96 355.1 183 89.6
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 1.6e-95 353.6 183 90.2
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 1.6e-95 353.6 182 89.0
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.7e-95 352.8 183 85.2
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 3.5e-95 352.4 183 87.4
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 7.7e-95 351.3 182 87.9
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.0e-94 350.9 182 87.9
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.3e-94 350.5 183 88.5
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 2.2e-94 349.7 184 87.5
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 2.2e-94 349.7 184 87.0
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 2.9e-94 349.4 184 87.0
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 5.0e-94 348.6 183 84.7
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 5.0e-94 348.6 183 84.7
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 1.1e-93 347.4 177 88.1
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.5e-93 347.1 183 84.2
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 1.9e-93 346.7 183 84.7
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 1.9e-93 346.7 184 85.9
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 2.5e-93 346.3 177 86.4
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 2.5e-93 346.3 183 86.9
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 3.2e-93 345.9 184 85.3
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 4.2e-93 345.5 184 86.4
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 4.2e-93 345.5 184 84.8
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 5.5e-93 345.1 183 85.2
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.2e-93 344.7 182 86.8
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 7.2e-93 344.7 179 86.0
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 7.2e-93 344.7 207 78.7
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.2e-92 344.0 183 85.2
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.1e-92 343.2 184 85.9
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.6e-92 342.4 184 85.3
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 4.7e-92 342.0 184 84.8
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 4.7e-92 342.0 183 84.7
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.0e-91 340.9 183 84.2
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 1.0e-91 340.9 182 87.4
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 1.0e-91 340.9 179 87.7
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 1.4e-91 340.5 183 85.2
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 1.8e-91 340.1 183 84.7
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.3e-91 339.7 180 85.6
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.3e-91 339.7 179 86.6
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 4.0e-91 339.0 183 83.1
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 4.0e-91 339.0 179 87.2
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 5.2e-91 338.6 177 86.4
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 8.8e-91 337.8 183 84.7
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 8.8e-91 337.8 179 84.9
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 2.6e-90 336.3 183 82.5
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 3.4e-90 335.9 183 82.5
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.4e-90 335.5 177 85.3
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 4.4e-90 335.5 183 84.7
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 4.4e-90 335.5 183 82.5
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 4.4e-90 335.5 177 86.4
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 7.5e-90 334.7 177 83.6
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.7e-89 333.6 184 81.0
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 3.7e-89 332.4 183 81.4
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 6.3e-89 331.6 183 81.4
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 6.3e-89 331.6 179 84.4
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 6.3e-89 331.6 184 81.0
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 8.3e-89 331.3 183 82.0
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 1.1e-88 330.9 183 83.1
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 4.1e-88 328.9 183 82.0
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 7.0e-88 328.2 176 81.2
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 1.6e-87 327.0 183 82.5
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 2.7e-87 326.2 183 81.4
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 4.5e-87 325.5 183 78.7
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 4.5e-87 325.5 179 83.8
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 1.7e-86 323.6 183 79.8
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 1.7e-86 323.6 183 79.8
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 2.9e-86 322.8 183 79.2
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 2.9e-86 322.8 177 84.2
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 2.9e-86 322.8 183 80.3
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 3.8e-86 322.4 184 81.0
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 5.0e-86 322.0 184 80.4
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 1.1e-85 320.9 177 82.5
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 1.5e-85 320.5 183 78.7
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 2.5e-85 319.7 187 78.1
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 3.2e-85 319.3 184 79.9
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 3.2e-85 319.3 176 83.0
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 9.5e-85 317.8 185 78.4
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 2.8e-84 316.2 184 79.3
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 3.6e-84 315.8 178 79.8
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 8.0e-84 314.7 179 81.6
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 8.0e-84 314.7 181 80.7
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.0e-83 314.3 187 74.9
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 1.8e-83 313.5 184 78.3
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.3e-83 313.2 183 78.1
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 2.3e-83 313.2 185 77.8
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.0e-83 312.4 178 77.5
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 2.0e-82 310.1 178 79.8
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 4.4e-82 308.9 241 61.8
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 4.9e-81 305.4 181 76.2
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 8.3e-81 304.7 189 74.1
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.1e-80 304.3 181 76.2
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 2.4e-80 303.1 184 76.6
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 9.2e-80 301.2 184 78.3
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 1.0e-78 297.7 183 76.0
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 1.5e-77 293.9 183 74.3
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 9.5e-77 291.2 183 72.7
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 6.8e-75 285.0 184 76.6
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 2.6e-74 283.1 223 61.9
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.2e-71 274.2 169 75.7
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 5.6e-69 265.4 136 88.2
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 9.8e-66 254.6 136 86.8
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.9e-64 250.4 191 62.8
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 9.2e-64 248.1 185 60.0
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.0e-63 246.9 182 62.6
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.0e-62 244.6 186 62.9
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.5e-58 230.7 200 56.5
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 1.5e-58 230.7 169 63.3
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.0e-54 218.0 168 62.5
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 8.1e-52 208.4 165 60.6
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 6.8e-51 205.3 166 61.4
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 5.8e-50 202.2 156 63.5
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.6e-47 194.1 97 93.8
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.3e-46 191.0 161 62.1
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 7.3e-45 185.3 190 52.6
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 6.2e-44 182.2 101 86.1
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 3.4e-42 176.4 114 75.4
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 9.9e-42 174.9 97 85.6
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.4e-40 171.0 97 82.5
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.4e-40 171.0 97 82.5
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.2e-40 169.5 94 85.1
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 1.2e-39 167.9 97 81.4
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 2.1e-39 167.2 167 50.3
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.7e-39 166.8 95 82.1
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 2.3e-38 163.7 84 82.1
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 4.0e-35 152.9 169 47.3
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.8e-33 146.4 115 59.1
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 5.4e-32 142.5 77 81.8
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.6e-31 139.4 81 76.5
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 1.8e-27 127.5 168 42.3
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 5.3e-27 125.9 102 56.9
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 9.0e-27 125.2 98 56.1
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 1.5e-26 124.4 97 56.7
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 1.0e-22 111.7 97 56.7
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 3.9e-22 109.8 50 96.0
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 3.9e-22 109.8 50 96.0
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.9e-17 93.6 51 84.3
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 1.9e-16 90.9 54 75.9
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.8e-12 77.0 38 89.5
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 2.4e-11 73.9 34 94.1


User provided reference genes

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