Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p004163 Quercus lobata HOM05D000566 ORTHO05D000686 5.2e-90 334.7 218 100.0
QL05p046274 Quercus lobata HOM05D000566 ORTHO05D000686 1.0e-69 267.3 215 85.6
Haze_06260 Corylus avellana HOM05D000566 ORTHO05D000686 2.0e-57 226.5 209 76.6
CiPaw.10G057700 Carya illinoinensis HOM05D000566 ORTHO05D000686 1.2e-54 217.2 208 60.6
Cfa000590 Carpinus fangiana HOM05D000566 ORTHO05D000686 1.6e-54 216.9 209 73.2
CiPaw.09G068200 Carya illinoinensis HOM05D000566 ORTHO05D000686 3.0e-53 212.6 208 61.1
Prupe.4G059200 Prunus persica HOM05D000566 ORTHO05D000686 3.0e-53 212.6 208 62.5
TWI38G1373 Tripterygium wilfordii HOM05D000566 ORTHO05D000686 2.8e-51 206.1 210 64.3
MD05G1303500 Malus domestica HOM05D000566 ORTHO05D000686 4.8e-51 205.3 210 61.4
ClCG01G023640 Citrullus lanatus HOM05D000566 ORTHO05D000686 1.4e-50 203.8 209 59.3
MD10G1282700 Malus domestica HOM05D000566 ORTHO05D000686 3.1e-50 202.6 208 61.1
MELO3C007221.2 Cucumis melo HOM05D000566 ORTHO05D000686 9.0e-50 201.1 209 58.9
Atru.chr10.1701 Acer truncatum HOM05D000566 ORTHO05D000686 1.2e-49 200.7 209 58.9
CsaV3_6G050790 Cucumis sativus L. HOM05D000566 ORTHO05D000686 2.6e-49 199.5 209 57.9
TWI38G2249 Tripterygium wilfordii HOM05D000566 ORTHO05D000686 4.5e-49 198.7 208 71.2
Sed0001579 Sechium edule HOM05D000566 ORTHO05D000686 1.3e-48 197.2 209 66.5
Cpa.g.sc7.63 Carica papaya HOM05D000566 ORTHO05D000686 1.6e-46 190.3 213 58.2
Manes.17G054000 Manihot esculenta HOM05D000566 ORTHO05D000686 2.1e-46 189.9 208 54.3
Sabra11G0046300 Salix brachista HOM05D000566 ORTHO05D000686 2.1e-46 189.9 210 56.7
Thecc.06G173300 Theobroma cacao HOM05D000566 ORTHO05D000686 1.3e-45 187.2 219 68.9
Duzib160G0685 Durio zibethinus HOM05D000566 ORTHO05D000686 7.4e-44 181.4 219 68.0
Dinv04629 Davidia involucrata HOM05D000566 ORTHO05D000686 9.6e-44 181.0 217 53.0
Gohir.A06G125600 Gossypium hirsutum HOM05D000566 ORTHO05D000686 2.1e-43 179.9 214 63.1
Manes.16G037100 Manihot esculenta HOM05D000566 ORTHO05D000686 4.8e-43 178.7 208 54.3
Gorai.010G158300 Gossypium raimondii HOM05D000566 ORTHO05D000686 1.8e-42 176.8 214 59.3
Gohir.D06G136000 Gossypium hirsutum HOM05D000566 ORTHO05D000686 3.1e-42 176.0 214 60.7
Duzib235G1311 Durio zibethinus HOM05D000566 ORTHO05D000686 5.3e-42 175.3 219 66.2
Potri.011G064500 Populus trichocarpa HOM05D000566 ORTHO05D000686 6.9e-42 174.9 211 60.7
PGR042G0221 Punica granatum HOM05D000566 ORTHO05D000686 1.5e-41 173.7 215 53.5
FAN11G2369 Fragaria x ananassa HOM05D000566 ORTHO05D000686 2.0e-41 173.3 212 65.6
FvH4_3g08000 Fragaria vesca HOM05D000566 ORTHO05D000686 2.6e-41 172.9 212 65.1
Gohir.A10G031200 Gossypium hirsutum HOM05D000566 ORTHO05D000686 7.6e-41 171.4 218 60.6
Hma1.2p1_0155F.1_g068260 Hydrangea macrophylla HOM05D000566 ORTHO05D000686 1.0e-40 171.0 217 52.1
Actinidia35568 Actinidia chinensis HOM05D000566 ORTHO05D000686 1.3e-40 170.6 211 54.5
CANSAT35G1676 Cannabis sativa HOM05D000566 ORTHO05D000686 1.3e-40 170.6 217 64.5
Sed0016456 Sechium edule HOM05D000566 ORTHO05D000686 1.3e-40 170.6 209 61.2
vmacro03937 Vaccinium macrocarpon HOM05D000566 ORTHO05D000686 2.2e-40 169.9 229 51.5
Ciclev10014629m.g Citrus clementina HOM05D000566 ORTHO05D000686 2.9e-40 169.5 209 59.8
Potri.004G054900 Populus trichocarpa HOM05D000566 ORTHO05D000686 3.8e-40 169.1 213 68.5
Rhsim13G0191700 Rhododendron simsii HOM05D000566 ORTHO05D000686 3.8e-40 169.1 234 48.7
Actinidia16809 Actinidia chinensis HOM05D000566 ORTHO05D000686 1.9e-39 166.8 210 51.0
CSS0042841 Camellia sinensis var. sinensis HOM05D000566 ORTHO05D000686 4.2e-39 165.6 212 51.9
RcHm_v2.0_Chr5g0010311 Rosa chinensis HOM05D000566 ORTHO05D000686 3.6e-38 162.5 208 62.5
Phvul.003G058200 Phaseolus vulgaris HOM05D000566 ORTHO05D000686 4.6e-38 162.2 213 56.8
TAR624G0866 Trochodendron aralioides HOM05D000566 ORTHO05D000686 4.6e-38 162.2 177 57.1
FAN25G1525 Fragaria x ananassa HOM05D000566 ORTHO05D000686 6.1e-38 161.8 175 70.9
TAR626G1519 Trochodendron aralioides HOM05D000566 ORTHO05D000686 6.1e-38 161.8 257 56.0
Solyc02g077090.4 Solanum lycopersicum HOM05D000566 ORTHO05D000686 1.3e-37 160.6 211 49.8
Sopen02g022020 Solanum pennellii HOM05D000566 ORTHO05D000686 1.3e-37 160.6 211 49.8
GSVIVG01021189001 Vitis vinifera HOM05D000566 ORTHO05D000686 5.1e-37 158.7 200 51.0
Gorai.011G033700 Gossypium raimondii HOM05D000566 ORTHO05D000686 6.7e-37 158.3 218 61.5
Nitab4.5_0001608g0010 Nicotiana tabacum HOM05D000566 ORTHO05D000686 8.7e-37 157.9 212 49.5
Gohir.D10G032000 Gossypium hirsutum HOM05D000566 ORTHO05D000686 1.9e-36 156.8 218 61.0
PGSC0003DMG400010246 Solanum tuberosum HOM05D000566 ORTHO05D000686 4.3e-36 155.6 211 48.8
Nitab4.5_0000681g0010 Nicotiana tabacum HOM05D000566 ORTHO05D000686 5.7e-36 155.2 212 48.6
arahy.Tifrunner.gnm1.ann1.BA5IRE Arachis hypogaea HOM05D000566 ORTHO05D000686 7.4e-36 154.8 238 48.7
Nn1g09060 Nelumbo nucifera HOM05D000566 ORTHO05D000686 1.6e-35 153.7 246 55.7
arahy.Tifrunner.gnm1.ann1.MK6WNS Arachis hypogaea HOM05D000566 ORTHO05D000686 2.2e-35 153.3 238 49.2
CiPaw.09G183000 Carya illinoinensis HOM05D000566 ORTHO05D000686 2.2e-35 153.3 126 69.8
MBI06_g45389_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D000686 8.2e-35 151.4 222 58.6
Peaxi162Scf00223g00811 Petunia axillaris HOM05D000566 ORTHO05D000686 1.1e-34 151.0 132 65.2
Migut.H01453 Erythranthe guttata HOM05D000566 ORTHO05D000686 6.9e-34 148.3 205 46.3
Glyma.07G205100 Glycine max HOM05D000566 ORTHO05D000686 2.6e-33 146.4 209 53.1
Lj6g0010625 Lotus japonicus HOM05D000566 ORTHO05D000686 2.6e-33 146.4 206 54.9
COL.COLO4_31322 Corchorus olitorius HOM05D000566 ORTHO05D000686 5.9e-33 145.2 208 64.4
Glyma.13G171100 Glycine max HOM05D000566 ORTHO05D000686 1.3e-32 144.1 213 53.1
Lsat_1_v5_gn_4_50000 Lactuca sativa HOM05D000566 ORTHO05D000686 1.3e-32 144.1 205 48.3
Sc05g0007200 Simmondsia chinensis HOM05D000566 ORTHO05D000686 1.3e-32 144.1 207 60.9
Ah.09g233700 Amaranthus hybridus HOM05D000566 ORTHO05D000686 1.7e-32 143.7 209 46.9
MBI07_g21407_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D000686 1.7e-32 143.7 208 45.7
HPP92_004045 Vanilla planifolia HOM05D000566 ORTHO05D000686 2.2e-32 143.3 219 44.7
VMungo0251G3123 Vigna mungo HOM05D000566 ORTHO05D000686 2.2e-32 143.3 212 50.0
HanXRQChr07g0186921 Helianthus annuus HOM05D000566 ORTHO05D000686 2.9e-32 142.9 225 44.0
HanXRQChr15g0490581 Helianthus annuus HOM05D000566 ORTHO05D000686 3.8e-32 142.5 231 43.3
Gohir.A09G074100 Gossypium hirsutum HOM05D000566 ORTHO05D000686 5.0e-32 142.1 252 42.9
Hund21185 Selenicereus undatus HOM05D000566 ORTHO05D000686 6.5e-32 141.7 204 46.1
Gohir.D09G073800 Gossypium hirsutum HOM05D000566 ORTHO05D000686 8.5e-32 141.4 250 44.4
Gorai.006G088700 Gossypium raimondii HOM05D000566 ORTHO05D000686 1.1e-31 141.0 250 44.4
Ah.14g087210 Amaranthus hybridus HOM05D000566 ORTHO05D000686 1.9e-31 140.2 220 45.0
Ca_26052_v3 Cicer arietinum L. HOM05D000566 ORTHO05D000686 4.2e-31 139.0 216 54.2
Cc02_g14630 Coffea canephora HOM05D000566 ORTHO05D000686 5.5e-31 138.7 219 42.5
Lj1A1194T86 Lonicera japonica HOM05D000566 ORTHO05D000686 7.2e-31 138.3 217 44.2
Glyma.13G231000 Glycine max HOM05D000566 ORTHO05D000686 9.4e-31 137.9 229 40.6
Oeu043097.1 Olea europaea HOM05D000566 ORTHO05D000686 1.2e-30 137.5 136 59.6
Oeu012061.1 Olea europaea HOM05D000566 ORTHO05D000686 1.6e-30 137.1 214 41.6
Lj2C297T7 Lonicera japonica HOM05D000566 ORTHO05D000686 3.6e-30 136.0 178 49.4
MSTRG.13214 Avicennia marina HOM05D000566 ORTHO05D000686 4.6e-30 135.6 178 46.6
Oeu062344.1 Olea europaea HOM05D000566 ORTHO05D000686 7.9e-30 134.8 136 58.1
HPP92_004057 Vanilla planifolia HOM05D000878 ORTHO05D000686 7.9e-30 134.8 219 54.8
Glyma.15G081500 Glycine max HOM05D000566 ORTHO05D000686 1.0e-29 134.4 214 40.7
Phvul.006G177200 Phaseolus vulgaris HOM05D000566 ORTHO05D000686 1.0e-29 134.4 213 41.3
VMungo0540G1475 Vigna mungo HOM05D000566 ORTHO05D000686 1.0e-29 134.4 213 41.8
PSO063G1141 Papaver somniferum HOM05D000566 ORTHO05D000686 2.3e-29 133.3 139 56.8
MSTRG.7395 Avicennia marina HOM05D000566 ORTHO05D000686 5.1e-29 132.1 209 45.0
SalBow8G1882 Salvia bowleyana HOM05D000566 ORTHO05D000686 6.7e-29 131.7 134 56.7
SGA_v2.0_scaffold1G00029 Striga asiatica HOM05D000566 ORTHO05D000686 2.0e-28 130.2 139 57.6
CDE02G4350 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 2.6e-28 129.8 208 43.8
unitig_0.g710 Utricularia gibba HOM05D000566 ORTHO05D000686 4.4e-28 129.0 187 44.4
SHI54757 Sapria himalayana HOM05D000566 ORTHO05D000686 7.4e-28 128.3 213 49.8
Medtr4g087780 Medicago truncatula HOM05D000566 ORTHO05D000686 1.3e-27 127.5 216 48.1
ECA234G0195 Erigeron canadensis HOM05D000566 ORTHO05D000686 1.7e-27 127.1 172 45.9
EL10Ac8g20506 Beta vulgaris HOM05D000566 ORTHO05D000686 2.2e-27 126.7 219 42.5
Eucgr.E02711 Eucalyptus grandis HOM05D000566 ORTHO05D000686 2.8e-27 126.3 216 41.2
Hund23959 Selenicereus undatus HOM05D000566 ORTHO05D000686 2.8e-27 126.3 136 58.1
SGA_v2.0_scaffold109G31086 Striga asiatica HOM05D000566 ORTHO05D000686 4.8e-27 125.6 133 60.2
unitig_749.g13662 Utricularia gibba HOM05D000566 ORTHO05D000686 4.8e-27 125.6 191 47.1
Aqoxy4G00467 Aquilegia oxysepala HOM05D000566 ORTHO05D000686 8.2e-27 124.8 224 40.2
CDE08G0428 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 1.1e-26 124.4 208 42.3
Migut.M01051 Erythranthe guttata HOM05D000566 ORTHO05D000686 1.1e-26 124.4 139 53.2
Lj4g0012403 Lotus japonicus HOM05D000566 ORTHO05D000686 1.1e-26 124.4 220 52.3
DCAR_005237 Daucus carota HOM05D000566 ORTHO05D000686 1.8e-26 123.6 191 45.0
Thhalv10024648m.g Eutrema salsugineum HOM05D000566 ORTHO05D000686 1.2e-25 120.9 228 40.8
AT4G18570 Arabidopsis thaliana HOM05D000566 ORTHO05D000686 2.0e-25 120.2 228 41.2
DCAR_028012 Daucus carota HOM05D000566 ORTHO05D000686 5.9e-25 118.6 131 55.0
PSO782G1797 Papaver somniferum HOM05D000566 ORTHO05D000686 5.9e-25 118.6 121 60.3
SalBow5G1331 Salvia bowleyana HOM05D000566 ORTHO05D000686 5.9e-25 118.6 117 59.0
THA.LOC104806152 Tarenaya hassleriana HOM05D000566 ORTHO05D000686 7.7e-25 118.2 226 49.6
Lalb_Chr05g0218761 Lupinus albus HOM05D000566 ORTHO05D000686 1.0e-24 117.9 209 52.2
arahy.Tifrunner.gnm1.ann1.274M2K Arachis hypogaea HOM05D000566 ORTHO05D000686 1.3e-24 117.5 202 40.1
arahy.Tifrunner.gnm1.ann1.XU6ZBK Arachis hypogaea HOM05D000566 ORTHO05D000686 1.3e-24 117.5 202 40.1
CDE09G0256 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 8.5e-24 114.8 131 53.4
MSTRG.14725 Avicennia marina HOM05D000566 ORTHO05D000686 1.4e-23 114.0 198 44.9
TPR.G16257 Trifolium pratense HOM05D000566 ORTHO05D000686 1.4e-23 114.0 220 52.3
BcaNung03816 Brassica carinata HOM05D000566 ORTHO05D000686 2.5e-23 113.2 221 47.1
Carub.0007s2267 Capsella rubella HOM05D000566 ORTHO05D000686 2.5e-23 113.2 231 40.7
C07p49840 Brassica napus HOM05D000566 ORTHO05D000686 7.2e-23 111.7 231 39.4
BolC7t45486H Brassica oleracea HOM05D000566 ORTHO05D000686 7.2e-23 111.7 231 39.4
Os01g0651932 Oryza sativa ssp. japonica HOM05D000566 ORTHO05D000686 1.2e-22 110.9 141 48.9
unitig_26.g9352 Utricularia gibba HOM05D000566 ORTHO05D000686 1.6e-22 110.5 118 61.0
Lalb_Chr16g0384241 Lupinus albus HOM05D000566 ORTHO05D000686 2.1e-22 110.2 218 52.3
Sp7g15470 Schrenkiella parvula HOM05D000566 ORTHO05D000686 3.6e-22 109.4 229 44.1
Zm00001eb158220 Zea mays HOM05D000566 ORTHO05D000686 3.6e-22 109.4 136 51.5
A03p51420 Brassica napus HOM05D000566 ORTHO05D000686 1.0e-21 107.8 232 50.4
BraA01t01004Z Brassica rapa HOM05D000566 ORTHO05D000686 1.0e-21 107.8 221 48.0
A01p10580 Brassica napus HOM05D000566 ORTHO05D000686 1.4e-21 107.5 221 39.4
BcaC09g51488 Brassica carinata HOM05D000566 ORTHO05D000686 1.8e-21 107.1 221 40.7
BolC1t01226H Brassica oleracea HOM05D000566 ORTHO05D000686 1.8e-21 107.1 221 40.7
BraA03t14226Z Brassica rapa HOM05D000566 ORTHO05D000686 2.3e-21 106.7 229 47.6
MBI06_g18004_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D000686 2.3e-21 106.7 129 55.0
Aa31LG6G1300 Aethionema arabicum HOM05D000566 ORTHO05D000686 6.7e-21 105.1 229 42.8
C01p12520 Brassica napus HOM05D000566 ORTHO05D000686 1.5e-20 104.0 221 38.9
CARHR225410 Cardamine hirsuta HOM05D000566 ORTHO05D000686 1.5e-20 104.0 231 45.9
AL7G35710 Arabidopsis lyrata HOM05D000566 ORTHO05D000686 2.0e-20 103.6 233 49.8
DCAR_007963 Daucus carota HOM05D000566 ORTHO05D000686 2.0e-20 103.6 202 38.1
ATR0602G291 Amborella trichopoda HOM05D000566 ORTHO05D000686 9.7e-20 101.3 217 45.6
DCAR_004017 Daucus carota HOM05D000566 ORTHO05D008456 2.8e-19 99.8 212 36.3
Sed0004567 Sechium edule HOM05D000566 ORTHO05D000686 3.7e-19 99.4 202 41.6
Zm00001eb270720 Zea mays HOM05D000566 ORTHO05D000686 2.4e-18 96.7 129 50.4
unitig_61.g26086 Utricularia gibba HOM05D000566 ORTHO05D000686 3.1e-18 96.3 133 49.6
BraA08t33372Z Brassica rapa HOM05D000566 ORTHO05D000686 9.1e-18 94.7 224 41.1
BcaC01g00548 Brassica carinata HOM05D000566 ORTHO05D000686 4.5e-17 92.4 218 39.0
C03p81330 Brassica napus HOM05D000566 ORTHO05D000686 4.5e-17 92.4 218 39.0
BolC3t20398H Brassica oleracea HOM05D000566 ORTHO05D000686 4.5e-17 92.4 218 39.0
BcaB04g18482 Brassica carinata HOM05D000566 ORTHO05D000686 2.2e-16 90.1 229 43.2
Zm00001eb296520 Zea mays HOM05D000566 ORTHO05D000686 1.2e-12 77.8 175 36.0
AUR62031165 Chenopodium quinoa HOM05D000566 ORTHO05D000686 2.0e-12 77.0 136 42.6
Lalb_Chr20g0121251 Lupinus albus HOM05D000566 ORTHO05D000686 9.1e-10 68.2 183 32.8
A08p13870 Brassica napus HOM05D000566 ORTHO05D000686 4.5e-09 65.9 136 37.5
Psat7g118840 Pisum sativum HOM05D000566 ORTHO05D000686 5.5e-07 58.9 216 32.4


User provided reference genes

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