Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1950.3 938 100.0
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1582.4 946 81.3
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 0.0e+00 1460.3 936 77.4
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1449.9 943 73.3
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1440.6 952 73.7
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1436.4 944 72.4
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1434.1 940 72.3
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1433.7 944 72.1
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1432.5 946 71.1
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1425.6 946 71.4
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1420.2 946 72.0
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1415.6 966 70.5
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1403.7 947 70.7
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1382.1 944 70.6
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1377.5 947 70.0
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1374.0 931 71.1
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1373.6 949 69.8
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1340.9 917 69.6
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1336.6 944 68.2
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1327.4 935 67.7
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 0.0e+00 1307.4 816 75.9
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1292.3 991 64.6
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1283.9 947 65.4
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1283.9 916 67.8
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 0.0e+00 1280.4 946 66.2
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1279.2 837 72.0
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1276.9 947 66.5
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1274.6 947 66.4
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1269.6 926 65.2
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 0.0e+00 1247.3 891 67.6
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1246.5 948 63.0
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 0.0e+00 1245.3 937 64.5
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 0.0e+00 1241.1 746 79.1
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 0.0e+00 1235.7 932 64.7
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1235.7 926 63.6
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1233.8 865 68.7
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 0.0e+00 1233.8 937 64.5
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 0.0e+00 1229.9 937 63.6
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1222.6 947 63.5
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1221.5 948 63.1
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 0.0e+00 1211.8 948 63.6
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1191.0 948 62.0
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 0.0e+00 1189.5 943 61.7
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 0.0e+00 1177.5 844 66.4
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 0.0e+00 1176.0 942 60.3
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 0.0e+00 1175.6 940 60.1
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1175.2 954 61.2
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 0.0e+00 1172.9 918 61.3
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 0.0e+00 1167.1 937 61.3
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 0.0e+00 1160.2 948 60.4
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1157.9 925 61.7
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 0.0e+00 1157.5 915 61.1
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 0.0e+00 1153.7 947 59.5
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 0.0e+00 1151.3 901 61.8
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1150.2 793 68.5
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 0.0e+00 1148.7 950 60.1
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1147.1 898 61.0
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 0.0e+00 1140.9 950 59.9
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 0.0e+00 1129.8 710 75.1
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 0.0e+00 1120.9 943 58.9
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 0.0e+00 1119.8 923 59.6
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 0.0e+00 1116.7 943 58.6
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 0.0e+00 1115.9 935 58.5
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1112.1 908 61.1
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 0.0e+00 1107.8 923 60.9
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 0.0e+00 1082.0 875 60.0
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 0.0e+00 1079.7 902 58.4
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 0.0e+00 1079.7 819 62.6
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 0.0e+00 1079.7 819 62.6
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 3.2e-311 1071.6 902 58.4
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 2.4e-309 1065.4 940 56.8
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 1.9e-306 1055.8 916 56.9
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 9.5e-306 1053.5 946 55.8
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 6.1e-305 1050.8 913 56.7
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 6.8e-304 1047.3 745 66.7
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 3.3e-298 1028.5 945 57.8
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 1.6e-297 1026.2 822 60.8
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 2.7e-292 1008.8 816 60.9
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 5.0e-291 1004.6 911 56.5
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 2.8e-289 998.8 956 53.5
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 1.1e-288 996.9 721 65.6
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 1.1e-288 996.9 952 52.8
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 2.1e-281 972.6 901 52.7
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 3.6e-281 971.8 635 71.2
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 1.4e-277 959.9 815 58.7
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 1.8e-272 943.0 892 52.8
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 2.4e-272 942.6 936 51.0
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 8.4e-270 934.1 947 53.6
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.6e-255 885.9 626 67.1
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 2.0e-218 763.5 489 72.4
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 5.3e-216 755.4 651 56.7
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 3.1e-200 703.0 582 57.2
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 1.5e-197 694.1 978 39.2
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.3e-185 654.4 438 68.7
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 2.0e-183 647.1 573 58.5
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 9.2e-176 621.7 472 66.3
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.6e-159 567.8 503 54.1
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 1.1e-157 561.6 512 54.5
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 8.1e-156 555.4 402 70.4
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 8.7e-134 482.3 381 61.9
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 1.3e-126 458.4 870 32.9
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.0e-105 389.0 306 59.8
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 4.8e-92 343.6 299 63.2
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 3.2e-88 330.9 256 67.2
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 6.3e-84 316.6 282 59.6
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 3.5e-74 284.3 206 65.5
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 3.7e-68 264.2 284 48.6
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 2.6e-61 241.5 304 42.8
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 1.4e-51 209.1 281 44.8
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 4.4e-37 161.0 107 74.8
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 1.1e-35 156.4 157 52.9
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 1.4e-35 156.0 157 51.6
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 1.2e-34 152.9 134 55.2
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 4.6e-34 151.0 114 61.4
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 3.2e-27 128.3 228 35.5
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 5.1e-25 120.9 100 60.0
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 4.5e-21 107.8 82 64.6
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 4.5e-21 107.8 95 58.9
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 9.6e-16 90.1 50 80.0
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 1.1e-14 86.7 85 58.8
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 2.4e-14 85.5 280 28.2
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 3.4e-13 81.6 51 74.5
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 7.6e-13 80.5 64 59.4
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 5.7e-08 64.3 151 29.1


User provided reference genes

Program Settings