Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p004071 Quercus lobata HOM05D004673 ORTHO05D005596 5.1e-103 378.3 270 100.0
QL01p003771 Quercus lobata HOM05D004673 ORTHO05D005596 7.3e-25 118.6 198 63.6
QL01p004573 Quercus lobata HOM05D004673 ORTHO05D005596 2.8e-24 116.7 90 62.2
Haze_22936 Corylus avellana HOM05D004673 ORTHO05D005596 4.7e-24 115.9 212 60.8
QL02p095991 Quercus lobata HOM05D004673 ORTHO05D005596 1.8e-23 114.0 190 67.4
QL02p096023 Quercus lobata HOM05D004673 ORTHO05D005596 1.8e-23 114.0 190 66.8
Dinv00554 Davidia involucrata HOM05D004673 ORTHO05D005596 3.1e-23 113.2 207 61.4
Cfa009556 Carpinus fangiana HOM05D004673 ORTHO05D005596 8.9e-23 111.7 193 63.7
QL01p004552 Quercus lobata HOM05D004673 ORTHO05D005596 1.7e-21 107.5 90 57.8
DCAR_030101 Daucus carota HOM05D004673 ORTHO05D005596 2.9e-21 106.7 284 48.6
QL01p016358 Quercus lobata HOM05D004673 ORTHO05D005596 2.9e-21 106.7 91 59.3
Aqoxy1G00488 Aquilegia oxysepala HOM05D004673 ORTHO05D005596 3.7e-21 106.3 198 57.6
QL01p016345 Quercus lobata HOM05D004673 ORTHO05D005596 4.9e-21 105.9 89 60.7
GSVIVG01025477001 Vitis vinifera HOM05D004673 ORTHO05D005596 8.3e-21 105.1 92 55.4
Nitab4.5_0000551g0010 Nicotiana tabacum HOM05D004673 ORTHO05D005596 1.6e-19 100.9 198 58.1
Hma1.2p1_0589F.1_g184830 Hydrangea macrophylla HOM05D004673 ORTHO05D005596 2.7e-19 100.1 89 53.9
QL08p003638 Quercus lobata HOM05D004673 ORTHO05D005596 2.7e-19 100.1 92 56.5
TAR623G1034 Trochodendron aralioides HOM05D004673 ORTHO05D005596 2.7e-19 100.1 220 55.9
CSS0005892 Camellia sinensis var. sinensis HOM05D004673 ORTHO05D005596 3.5e-19 99.8 192 59.9
Lsat_1_v5_gn_6_55380 Lactuca sativa HOM05D004673 ORTHO05D005596 4.6e-19 99.4 184 61.4
TWI60G0809 Tripterygium wilfordii HOM05D004673 ORTHO05D005596 4.6e-19 99.4 189 60.8
QL01p004480 Quercus lobata HOM05D004673 ORTHO05D005596 6.0e-19 99.0 90 56.7
Potri.001G003200 Populus trichocarpa HOM05D004673 ORTHO05D005596 1.0e-18 98.2 202 57.4
Dinv09263 Davidia involucrata HOM05D004673 ORTHO05D005596 1.3e-18 97.8 73 64.4
Thecc.05G294400 Theobroma cacao HOM05D004673 ORTHO05D005596 1.3e-18 97.8 196 58.2
CANSAT11G1431 Cannabis sativa HOM05D004673 ORTHO05D005596 1.7e-18 97.4 213 58.2
Lsat_1_v5_gn_6_53540 Lactuca sativa HOM05D004673 ORTHO05D005596 3.9e-18 96.3 184 60.3
CsaV3_1G041620 Cucumis sativus L. HOM05D004673 ORTHO05D005596 5.1e-18 95.9 263 50.2
MELO3C015573.2 Cucumis melo HOM05D004673 ORTHO05D005596 6.6e-18 95.5 245 52.7
Sabra01G0002300 Salix brachista HOM05D004673 ORTHO05D005596 6.6e-18 95.5 199 57.8
QL01p003522 Quercus lobata HOM05D000182 ORTHO05D005596 8.6e-18 95.1 183 63.4
Lsat_1_v5_gn_1_25861 Lactuca sativa HOM05D004673 ORTHO05D005596 1.1e-17 94.7 184 60.9
Lsat_1_v5_gn_6_55581 Lactuca sativa HOM05D004673 ORTHO05D005596 1.1e-17 94.7 204 56.4
Atru.chr1.2923 Acer truncatum HOM05D004673 ORTHO05D005596 1.5e-17 94.4 201 57.2
Lj2P776T43 Lonicera japonica HOM05D004673 ORTHO05D005596 1.5e-17 94.4 85 49.4
Dinv00553 Davidia involucrata HOM05D004673 ORTHO05D005596 1.9e-17 94.0 75 62.7
QL08p003602 Quercus lobata HOM05D004673 ORTHO05D005596 3.3e-17 93.2 70 62.9
DCAR_030979 Daucus carota HOM05D004673 ORTHO05D005596 5.6e-17 92.4 281 47.3
Lsat_1_v5_gn_6_55460 Lactuca sativa HOM05D004673 ORTHO05D005596 7.3e-17 92.0 188 60.6
QL01p004463 Quercus lobata HOM05D004673 ORTHO05D005596 9.5e-17 91.7 70 62.9
DCAR_030102 Daucus carota HOM05D004673 ORTHO05D005596 1.6e-16 90.9 260 48.5
Rhsim13G0233200 Rhododendron simsii HOM05D004673 ORTHO05D005596 2.8e-16 90.1 199 56.8
DCAR_030109 Daucus carota HOM05D004673 ORTHO05D005596 4.7e-16 89.4 221 53.4
Nitab4.5_0006195g0010 Nicotiana tabacum HOM05D004673 ORTHO05D005596 4.7e-16 89.4 199 55.8
Lj1P522T31 Lonicera japonica HOM05D004673 ORTHO05D005596 6.2e-16 89.0 93 47.3
Peaxi162Scf00705g00063 Petunia axillaris HOM05D004673 ORTHO05D005596 8.1e-16 88.6 184 59.2
Prupe.7G003900 Prunus persica HOM05D004673 ORTHO05D005596 1.4e-15 87.8 194 59.3
DCAR_032195 Daucus carota HOM05D004673 ORTHO05D005596 1.8e-15 87.4 196 58.2
ECA233G4672 Erigeron canadensis HOM05D004673 ORTHO05D005596 3.1e-15 86.7 183 59.0
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 3.1e-15 86.7 201 58.2
COL.COLO4_13599 Corchorus olitorius HOM05D004673 ORTHO05D005596 5.2e-15 85.9 197 57.9
HPP92_013962 Vanilla planifolia HOM05D004673 ORTHO05D005596 5.2e-15 85.9 75 53.3
DCAR_030110 Daucus carota HOM05D004673 ORTHO05D005596 6.8e-15 85.5 91 46.2
Sed0024334 Sechium edule HOM05D004673 ORTHO05D005596 6.8e-15 85.5 90 48.9
DCAR_030112 Daucus carota HOM05D004673 ORTHO05D005596 8.9e-15 85.1 251 47.8
HanXRQChr13g0405741 Helianthus annuus HOM05D004673 ORTHO05D005596 1.2e-14 84.7 187 59.4
ClCG03G014570 Citrullus lanatus HOM05D004673 ORTHO05D005596 1.5e-14 84.3 198 59.1
COL.COLO4_13601 Corchorus olitorius HOM05D000750 ORTHO05D000714 2.0e-14 84.0 87 47.1
CsaV3_1G041610 Cucumis sativus L. HOM05D004673 ORTHO05D005596 2.0e-14 84.0 94 47.9
DCAR_030114 Daucus carota HOM05D004673 ORTHO05D005596 3.4e-14 83.2 188 58.0
Ciclev10024612m.g Citrus clementina HOM05D004673 ORTHO05D005596 9.9e-14 81.6 191 58.1
DCAR_013113 Daucus carota HOM05D004673 ORTHO05D005596 1.3e-13 81.3 219 51.1
DCAR_030100 Daucus carota HOM05D004673 ORTHO05D005596 1.3e-13 81.3 298 43.6
Gohir.A11G259500 Gossypium hirsutum HOM05D004673 ORTHO05D005596 1.3e-13 81.3 197 55.3
CAN.G1834.13 Capsicum annuum HOM05D004673 ORTHO05D005596 1.7e-13 80.9 84 48.8
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.7e-13 80.9 234 41.5
HPP92_013963 Vanilla planifolia HOM05D004673 ORTHO05D005596 1.7e-13 80.9 75 50.7
AUR62032055 Chenopodium quinoa HOM05D004673 ORTHO05D005596 2.2e-13 80.5 71 47.9
ECA233G4485 Erigeron canadensis HOM05D004673 ORTHO05D005596 2.9e-13 80.1 187 58.3
Manes.03G086906 Manihot esculenta HOM05D004673 ORTHO05D005596 1.1e-12 78.2 180 60.6
MELO3C015571.2 Cucumis melo HOM05D004673 ORTHO05D005596 2.4e-12 77.0 82 48.8
Cc01_g00160 Coffea canephora HOM05D004673 ORTHO05D005596 4.1e-12 76.3 212 53.3
Carub.0003s0318 Capsella rubella HOM05D004673 ORTHO05D005596 5.4e-12 75.9 264 47.0
HanXRQChr07g0187111 Helianthus annuus HOM05D004673 ORTHO05D005596 5.4e-12 75.9 186 58.1
Cpa.g.sc1158.1 Carica papaya HOM05D004673 ORTHO05D005596 1.2e-11 74.7 74 43.2
Thhalv10027707m.g Eutrema salsugineum HOM05D004673 ORTHO05D005596 1.2e-11 74.7 257 47.9
HanXRQChr13g0405711 Helianthus annuus HOM05D004673 ORTHO05D005596 1.2e-11 74.7 186 56.5
Cpa.g.c34637 Carica papaya HOM05D004673 ORTHO05D005596 2.1e-11 73.9 87 40.2
DCAR_030108 Daucus carota HOM05D004673 ORTHO05D005596 2.7e-11 73.6 197 53.8
HanXRQChr07g0187551 Helianthus annuus HOM05D004673 ORTHO05D005596 3.5e-11 73.2 74 48.6
DCAR_030099 Daucus carota HOM05D004673 ORTHO05D005596 1.0e-10 71.6 242 47.9
COL.COLO4_13600 Corchorus olitorius HOM05D004673 ORTHO05D005596 1.3e-10 71.2 73 46.6
AUR62032689 Chenopodium quinoa HOM05D000750 ORTHO05D000714 2.3e-10 70.5 89 40.4
ECA233G2517 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.3e-10 70.5 169 60.9
EL10Ac3g06819 Beta vulgaris HOM05D004673 ORTHO05D005596 6.6e-10 68.9 71 45.1
Aa31LG5G14520 Aethionema arabicum HOM05D004673 ORTHO05D005596 1.9e-09 67.4 187 56.7
BcaB04g19351 Brassica carinata HOM05D004673 ORTHO05D005596 2.5e-09 67.0 190 55.8
C03p40670 Brassica napus HOM05D004673 ORTHO05D005596 2.5e-09 67.0 190 55.8
HPP92_013964 Vanilla planifolia HOM05D004673 ORTHO05D005596 2.8e-08 63.5 69 49.3
Gorai.007G289600 Gossypium raimondii HOM05D004673 ORTHO05D005596 4.7e-08 62.8 60 48.3
BraA03t12522Z Brassica rapa HOM05D004673 ORTHO05D005596 6.2e-08 62.4 190 54.2
Carub.0006s3213 Capsella rubella HOM05D004673 ORTHO05D005596 6.2e-08 62.4 259 45.6
Aa31LG5G14510 Aethionema arabicum HOM05D004673 ORTHO05D005596 1.1e-07 61.6 259 44.4
CARHR253220 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.1e-07 61.6 170 58.8
MBI11_g38090_MAGBIO Magnolia biondii HOM05D004673 ORTHO05D005596 4.0e-07 59.7 199 50.8
A03p33470 Brassica napus HOM05D004673 ORTHO05D005596 5.2e-07 59.3 190 53.7
CARHR078050 Cardamine hirsuta HOM05D004673 ORTHO05D005596 5.2e-07 59.3 83 41.0
ATR0697G215 Amborella trichopoda HOM05D004673 ORTHO05D005596 6.8e-07 58.9 183 55.2
HPP92_013959 Vanilla planifolia HOM05D004673 ORTHO05D005596 8.9e-07 58.5 57 49.1
QL07p015672 Quercus lobata HOM05D004673 ORTHO05D005596 1.5e-06 57.8 47 57.4
AL6G47840 Arabidopsis lyrata HOM05D004673 ORTHO05D005596 2.0e-06 57.4 299 42.5
BolC3t16332H Brassica oleracea HOM05D004673 ORTHO05D005596 2.0e-06 57.4 178 56.2
THA.LOC104816063 Tarenaya hassleriana HOM05D004673 ORTHO05D005596 2.0e-06 57.4 46 54.3
Manes.04G014401 Manihot esculenta HOM05D000071 ORTHO05D000029 3.4e-06 56.6 77 35.1
BcaB07g31134 Brassica carinata HOM05D004673 ORTHO05D005596 7.6e-06 55.5 75 42.7
BcaB06g28624 Brassica carinata HOM05D000053 ORTHO05D000035 9.9e-06 55.1 64 43.8
Cc11_g07420 Coffea canephora HOM05D000071 ORTHO05D000029 9.9e-06 55.1 73 37.0


User provided reference genes

Program Settings