Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 3.4e-40 167.9 88 100.0
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 1.1e-35 152.9 89 94.4
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 8.4e-31 136.7 71 87.3
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 9.3e-30 133.3 73 80.8
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 3.0e-28 128.3 73 78.1
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 4.3e-27 124.4 73 78.1
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 2.1e-26 122.1 74 73.0
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 1.1e-25 119.8 72 76.4
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 1.1e-25 119.8 74 70.3
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 2.4e-25 118.6 74 75.7
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 2.4e-25 118.6 74 74.3
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 3.1e-25 118.2 73 74.0
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 9.0e-25 116.7 72 75.0
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 1.2e-24 116.3 73 71.2
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 1.5e-24 115.9 71 76.1
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 1.5e-24 115.9 71 74.6
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.5e-24 115.9 74 74.3
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 2.0e-24 115.5 72 70.8
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 2.0e-24 115.5 72 70.8
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 2.6e-24 115.2 71 73.2
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 4.5e-24 114.4 71 73.2
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 4.5e-24 114.4 71 73.2
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 5.8e-24 114.0 73 67.1
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 5.8e-24 114.0 74 74.3
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 7.6e-24 113.6 73 67.1
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 3.8e-23 111.3 73 69.9
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 3.8e-23 111.3 74 71.6
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 4.9e-23 110.9 74 68.9
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 4.9e-23 110.9 70 72.9
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 6.5e-23 110.5 70 72.9
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 1.1e-22 109.8 73 71.2
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.1e-22 109.8 63 79.4
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 1.9e-22 109.0 72 72.2
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 2.5e-22 108.6 71 71.8
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 2.5e-22 108.6 70 75.7
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 3.2e-22 108.2 71 73.2
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 4.2e-22 107.8 71 71.8
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 9.3e-22 106.7 70 71.4
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 9.3e-22 106.7 72 70.8
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 2.7e-21 105.1 73 67.1
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 3.5e-21 104.8 74 63.5
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 6.1e-21 104.0 73 63.0
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 7.9e-21 103.6 74 64.9
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 7.9e-21 103.6 72 69.4
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 1.8e-20 102.4 73 61.6
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 2.3e-20 102.1 71 70.4
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 3.0e-20 101.7 70 71.4
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 3.9e-20 101.3 73 68.5
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 3.9e-20 101.3 72 68.1
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 5.1e-20 100.9 74 60.8
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 5.1e-20 100.9 74 60.8
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 6.7e-20 100.5 72 68.1
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 6.7e-20 100.5 74 60.8
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 6.7e-20 100.5 71 64.8
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 1.1e-19 99.8 72 68.1
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.1e-19 99.8 84 61.9
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 1.5e-19 99.4 71 67.6
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 2.5e-19 98.6 72 66.7
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 3.3e-19 98.2 72 66.7
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 3.3e-19 98.2 70 61.4
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 4.3e-19 97.8 65 69.2
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 4.3e-19 97.8 86 54.7
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 5.7e-19 97.4 72 66.7
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 1.6e-18 95.9 72 65.3
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 1.6e-18 95.9 72 65.3
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 2.2e-18 95.5 71 62.0
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 4.8e-18 94.4 72 65.3
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 6.3e-18 94.0 74 59.5
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 2.4e-17 92.0 71 63.4
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 9.0e-17 90.1 88 54.5
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 9.0e-17 90.1 57 75.4
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.0e-15 86.7 70 55.7
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 1.3e-15 86.3 57 70.2
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 5.0e-15 84.3 71 62.0
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 6.5e-15 84.0 52 71.2
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 6.5e-15 84.0 52 71.2
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 1.2e-13 79.7 72 55.6
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 3.9e-12 74.7 70 45.7
SGA_v2.0_scaffold7G04151 Striga asiatica HOM05D000252 ORTHO05D000307 2.2e-10 68.9 42 71.4
HanXRQChr04g0118971 Helianthus annuus HOM05D007721 ORTHO05D009811 5.9e-08 60.8 46 60.9
SGA_v2.0_scaffold114G31816 Striga asiatica HOM05D007721 ORTHO05D009811 1.1e-06 56.6 40 62.5
ECA248G3328 Erigeron canadensis HOM05D000152 ORTHO05D001046 2.5e-06 55.5 43 58.1
TWI34G0772 Tripterygium wilfordii HOM05D007721 ORTHO05D009811 3.2e-06 55.1 40 67.5


User provided reference genes

Program Settings