Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 5.6e-158 560.8 273 100.0
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 1.7e-114 416.4 266 77.1
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 1.5e-107 393.3 270 69.6
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 2.7e-104 382.5 276 67.0
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 1.4e-103 380.2 271 66.4
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 1.1e-102 377.1 271 66.1
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 9.7e-102 374.0 268 68.7
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 1.8e-100 369.8 270 66.7
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 4.1e-100 368.6 270 67.8
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 5.3e-100 368.2 264 66.7
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 5.3e-100 368.2 265 66.8
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.2e-99 367.1 262 67.6
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 3.5e-99 365.5 277 66.4
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 4.5e-99 365.2 262 67.2
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 4.5e-99 365.2 277 66.4
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 4.5e-99 365.2 267 66.7
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 1.7e-98 363.2 276 66.7
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 2.2e-98 362.8 277 67.5
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 1.5e-97 360.1 269 65.8
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 9.4e-97 357.5 262 66.0
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 1.2e-96 357.1 284 64.1
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 2.3e-95 352.8 265 65.3
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 3.0e-95 352.4 269 64.7
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 3.0e-95 352.4 265 65.3
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 5.2e-95 351.7 266 66.5
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 6.7e-95 351.3 269 64.7
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 6.7e-95 351.3 271 66.1
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 1.5e-94 350.1 265 65.7
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 2.6e-94 349.4 263 65.4
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 7.5e-94 347.8 263 65.0
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.8e-93 345.9 259 66.8
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 3.7e-93 345.5 276 63.0
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 4.1e-92 342.0 274 62.0
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 5.3e-92 341.7 284 62.3
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 3.5e-91 339.0 274 60.6
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 1.0e-90 337.4 274 61.7
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 1.3e-90 337.0 252 66.7
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 1.7e-90 336.7 267 62.9
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 3.8e-90 335.5 264 64.4
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 3.8e-90 335.5 264 64.4
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 5.0e-90 335.1 276 61.2
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 8.5e-90 334.3 262 63.7
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 8.5e-90 334.3 262 63.7
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 1.1e-89 334.0 259 64.5
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.9e-89 333.2 276 60.9
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 1.9e-89 333.2 288 59.4
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 2.5e-89 332.8 262 63.7
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 3.2e-89 332.4 270 60.7
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 5.5e-89 331.6 222 76.1
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 5.5e-89 331.6 262 63.4
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 7.2e-89 331.3 272 61.0
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 9.4e-89 330.9 276 60.1
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 9.4e-89 330.9 272 61.0
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 4.7e-88 328.6 258 64.0
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 6.1e-88 328.2 271 62.0
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 1.0e-87 327.4 274 60.6
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 1.0e-87 327.4 242 66.9
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 1.4e-87 327.0 257 63.0
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 1.4e-87 327.0 257 63.0
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 1.4e-87 327.0 296 58.1
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 1.8e-87 326.6 258 65.5
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.8e-87 326.6 271 60.9
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 1.8e-87 326.6 258 63.6
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.0e-87 325.9 268 61.2
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 5.2e-87 325.1 272 60.3
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 8.8e-87 324.3 265 60.0
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 1.2e-86 323.9 269 59.1
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 3.4e-86 322.4 258 64.7
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 5.7e-86 321.6 269 59.1
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 5.7e-86 321.6 272 58.8
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 9.8e-86 320.9 272 56.2
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 8.3e-85 317.8 273 58.2
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 5.4e-84 315.1 269 58.4
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 9.1e-84 314.3 269 59.9
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 1.2e-83 313.9 278 57.9
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 1.6e-83 313.5 261 55.9
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 2.7e-83 312.8 267 57.7
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 4.5e-83 312.0 273 57.1
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 6.6e-82 308.1 271 55.0
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 1.1e-81 307.4 261 60.2
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 2.5e-81 306.2 267 59.2
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 2.8e-80 302.8 276 55.1
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 8.0e-80 301.2 276 54.7
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 2.3e-79 299.7 270 55.6
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 4.0e-79 298.9 213 70.0
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 8.9e-79 297.7 270 55.9
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 4.4e-78 295.4 253 60.1
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 3.7e-77 292.4 277 54.9
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 3.7e-77 292.4 251 59.4
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 3.7e-77 292.4 273 52.4
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 4.1e-76 288.9 270 56.7
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 7.0e-76 288.1 272 56.2
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 1.2e-75 287.3 244 60.2
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 1.0e-74 284.3 284 52.8
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 4.3e-73 278.9 239 59.4
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 9.5e-73 277.7 266 53.4
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 9.5e-73 277.7 247 55.5
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 1.2e-72 277.3 244 57.4
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 2.1e-72 276.6 246 56.1
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 7.5e-70 268.1 302 48.3
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 4.6e-67 258.8 271 51.3
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 1.3e-66 257.3 273 47.6
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 1.5e-65 253.8 271 45.0
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 7.3e-65 251.5 332 41.9
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 2.8e-64 249.6 276 48.9
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 4.0e-63 245.7 260 50.4
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 7.5e-62 241.5 261 50.2
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 5.4e-60 235.3 305 42.6
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 1.9e-57 226.9 193 61.1
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.6e-56 223.8 216 56.0
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.6e-56 223.8 216 56.0
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.8e-55 220.3 195 57.9
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.5e-54 217.2 216 55.1
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.7e-53 213.8 216 54.6
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 9.2e-52 208.0 265 44.5
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.0e-50 204.5 222 52.7
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 2.3e-50 203.4 206 50.0
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 3.0e-50 203.0 276 37.3
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 1.4e-47 194.1 188 53.2
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 2.6e-46 189.9 245 42.4
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 4.2e-44 182.6 122 70.5
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 1.9e-41 173.7 137 70.1
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 1.3e-40 171.0 169 54.4
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 2.1e-40 170.2 151 58.3
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 1.8e-39 167.2 427 27.9
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 1.3e-37 161.0 352 33.0
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 3.8e-37 159.5 149 63.1
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 4.9e-37 159.1 273 35.2
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 1.7e-34 150.6 158 49.4
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 4.2e-28 129.4 84 67.9
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 1.2e-27 127.9 385 25.7
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 1.9e-25 120.6 151 44.4
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 2.8e-24 116.7 321 26.5
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 3.8e-21 106.3 151 41.1
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 7.1e-20 102.1 165 38.8
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.6e-19 100.9 63 71.4
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 4.6e-19 99.4 140 44.3
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 3.0e-18 96.7 193 34.2
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.9e-18 96.3 57 71.9
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 1.6e-16 90.9 52 75.0
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.9e-13 80.1 56 67.9
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 7.4e-09 65.5 88 44.3
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.8e-07 60.8 29 86.2
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.4e-07 60.5 38 65.8
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 4.1e-07 59.7 38 68.4
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 4.1e-07 59.7 38 68.4
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 5.3e-07 59.3 37 67.6
Haze_02522 Corylus avellana HOM05D004971 ORTHO05D006289 5.3e-07 59.3 89 37.1


User provided reference genes

Program Settings