Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 9.7e-116 420.2 224 100.0
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 2.6e-84 315.8 224 72.8
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 4.9e-83 311.6 224 71.9
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 1.8e-82 309.7 217 71.4
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 2.0e-76 289.7 221 67.9
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 3.5e-73 278.9 222 67.1
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 6.0e-73 278.1 224 67.4
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 6.2e-70 268.1 224 63.8
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 3.4e-68 262.3 224 62.5
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 4.4e-68 261.9 225 62.2
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 5.8e-68 261.5 224 62.9
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 2.9e-67 259.2 227 63.0
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 4.1e-66 255.4 228 61.4
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 7.1e-66 254.6 223 61.0
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 7.8e-65 251.1 226 61.5
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 1.7e-64 250.0 228 60.5
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 3.9e-64 248.8 223 62.8
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 6.6e-64 248.1 221 62.4
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 1.9e-63 246.5 231 59.3
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 1.6e-62 243.4 225 61.3
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 1.6e-62 243.4 225 61.3
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 6.2e-62 241.5 228 58.3
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 8.1e-62 241.1 225 60.9
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 4.0e-61 238.8 228 58.8
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 8.9e-61 237.7 228 59.6
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 8.9e-61 237.7 222 60.8
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 2.6e-60 236.1 231 58.0
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 9.9e-60 234.2 224 57.1
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 1.3e-59 233.8 231 58.4
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 5.4e-58 228.4 227 58.6
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 7.1e-58 228.0 224 54.5
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.0e-56 224.2 224 56.2
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 6.6e-56 221.5 226 56.6
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 6.6e-56 221.5 224 53.6
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 6.6e-56 221.5 223 54.3
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 1.1e-55 220.7 227 55.5
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 1.5e-55 220.3 223 56.1
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 1.9e-55 219.9 224 56.2
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.9e-55 219.9 227 56.4
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 4.3e-55 218.8 223 54.7
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 5.6e-55 218.4 228 56.1
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 7.3e-55 218.0 227 55.9
Ciclev10016584m.g Citrus clementina HOM05D006456 ORTHO05D007588 2.1e-54 216.5 228 54.4
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 4.7e-54 215.3 226 54.0
Peaxi162Scf00520g00114 Petunia axillaris HOM05D006456 ORTHO05D007588 1.1e-53 214.2 170 65.9
PGSC0003DMG400010378 Solanum tuberosum HOM05D006456 ORTHO05D007588 4.0e-53 212.2 190 60.0
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 5.2e-53 211.8 220 55.0
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 5.2e-53 211.8 227 53.7
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 6.8e-53 211.5 223 52.9
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 3.4e-52 209.1 225 50.2
Sc11g0003890 Simmondsia chinensis HOM05D006456 ORTHO05D007588 5.8e-52 208.4 271 47.6
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 7.6e-52 208.0 224 49.6
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 9.9e-52 207.6 227 53.7
MBI16_g14292_MAGBIO Magnolia biondii HOM05D006456 ORTHO05D007588 9.9e-52 207.6 222 52.3
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 1.3e-51 207.2 227 54.6
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 1.3e-51 207.2 224 51.8
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 1.3e-51 207.2 220 55.5
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 2.2e-51 206.5 224 50.9
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 2.9e-51 206.1 223 50.2
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 2.9e-51 206.1 228 54.8
unitig_52.g17127 Utricularia gibba HOM05D006456 ORTHO05D007588 3.8e-51 205.7 227 51.1
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 4.9e-51 205.3 230 52.2
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 2.4e-50 203.0 196 58.2
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 2.4e-50 203.0 220 53.6
ECA246G1061 Erigeron canadensis HOM05D006456 ORTHO05D007588 5.4e-50 201.8 220 55.0
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 1.2e-49 200.7 242 49.2
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 1.6e-49 200.3 222 50.5
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 2.1e-49 199.9 222 51.4
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 2.1e-49 199.9 224 50.9
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 2.1e-49 199.9 224 54.5
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 4.6e-49 198.7 218 51.4
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 7.8e-49 198.0 222 50.5
PGR119G2311 Punica granatum HOM05D006456 ORTHO05D007588 1.0e-48 197.6 227 51.1
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 3.0e-48 196.1 222 51.8
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 6.6e-48 194.9 226 49.6
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 8.7e-48 194.5 225 51.6
HanXRQChr17g0556631 Helianthus annuus HOM05D006456 ORTHO05D007588 1.9e-47 193.4 224 47.8
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 4.3e-47 192.2 225 48.9
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 7.3e-47 191.4 225 51.6
TPR.G4830 Trifolium pratense HOM05D006456 ORTHO05D007588 7.3e-47 191.4 230 50.0
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 9.6e-47 191.0 218 47.7
ATR0053G055 Amborella trichopoda HOM05D006456 ORTHO05D007588 1.6e-46 190.3 223 48.9
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 6.2e-46 188.3 219 48.9
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 4.0e-45 185.7 221 48.4
RcHm_v2.0_Chr4g0434211 Rosa chinensis HOM05D006456 ORTHO05D007588 5.3e-45 185.3 224 52.7
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 9.0e-45 184.5 227 49.8
Lj6P752T19 Lonicera japonica HOM05D006456 ORTHO05D007588 3.4e-44 182.6 126 73.8
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 1.3e-43 180.6 231 48.1
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 1.4e-42 177.2 238 45.0
Sed0026587 Sechium edule HOM05D006456 ORTHO05D007588 2.4e-42 176.4 168 59.5
AUR62014103 Chenopodium quinoa HOM05D006456 ORTHO05D007588 5.4e-42 175.3 234 46.2
Migut.E00381 Erythranthe guttata HOM05D006456 ORTHO05D007588 1.2e-41 174.1 128 69.5
Eucgr.G02230 Eucalyptus grandis HOM05D006456 ORTHO05D007588 2.5e-39 166.4 232 45.7
VMungo0720G1166 Vigna mungo HOM05D006456 ORTHO05D007588 2.5e-39 166.4 218 45.0
EL10Ac6g14282 Beta vulgaris HOM05D006456 ORTHO05D007588 5.6e-39 165.2 228 43.4
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 1.3e-38 164.1 235 44.7
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 3.6e-38 162.5 226 45.1
Ah.02g128170 Amaranthus hybridus HOM05D006456 ORTHO05D007588 9.0e-37 157.9 235 42.6
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 1.9e-34 150.2 325 36.3
Nitab4.5_0012897g0010 Nicotiana tabacum HOM05D006456 ORTHO05D007588 1.2e-33 147.5 180 50.0
HPP92_004850 Vanilla planifolia HOM05D006456 ORTHO05D007588 4.6e-33 145.6 231 42.4
HPP92_004876 Vanilla planifolia HOM05D006456 ORTHO05D007588 3.0e-32 142.9 233 42.5
HanXRQChr17g0556611 Helianthus annuus HOM05D006456 ORTHO05D007588 9.6e-31 137.9 132 56.1
Zm00001eb357890 Zea mays HOM05D006456 ORTHO05D007588 1.4e-29 134.0 221 38.9
Os01g0607300 Oryza sativa ssp. japonica HOM05D006456 ORTHO05D007588 9.0e-29 131.3 229 35.8
BolC6t38884H Brassica oleracea HOM05D006456 ORTHO05D007588 7.6e-28 128.3 123 54.5
BraA07t30839Z Brassica rapa HOM05D006456 ORTHO05D007588 9.3e-26 121.3 118 54.2
Pp3c2_12120 Physcomitrium patens HOM05D006456 ORTHO05D007588 3.2e-18 96.3 243 32.1
Pp3c14_19600 Physcomitrium patens HOM05D006456 ORTHO05D007588 4.2e-18 95.9 245 32.7
Mapoly0066s0083 Marchantia polymorpha HOM05D006456 ORTHO05D007588 2.7e-17 93.2 226 31.9
CDE06G0604 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 1.1e-15 87.8 115 44.3
COL.COLO4_36793 Corchorus olitorius HOM05D006456 ORTHO05D007588 1.5e-15 87.4 53 77.4
SEGI_26799 Sequoiadendron giganteum HOM05D006456 ORTHO05D007588 1.4e-13 80.9 100 47.0
Actinidia31998 Actinidia chinensis HOM05D006456 ORTHO05D007588 5.3e-13 79.0 97 50.5
SHI16262 Sapria himalayana HOM05D006456 ORTHO05D007588 3.2e-10 69.7 199 32.7
BolC6t38885H Brassica oleracea HOM05D006456 ORTHO05D007588 4.2e-10 69.3 99 43.4
SHI16259 Sapria himalayana HOM05D006456 ORTHO05D007588 4.2e-10 69.3 50 66.0
BraA07t30840Z Brassica rapa HOM05D006456 ORTHO05D007588 3.6e-09 66.2 94 42.6
Thhalv10015519m.g Eutrema salsugineum HOM05D000984 ORTHO05D001096 7.4e-07 58.5 78 39.7
CBR_g17172 Chara braunii HOM05D006456 ORTHO05D007588 2.8e-06 56.6 76 35.5
Cre16.g675637 Chlamydomonas reinhardtii HOM05D000984 ORTHO05D001096 2.8e-06 56.6 82 31.7


User provided reference genes

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