Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 1.8e-126 457.6 228 100.0
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 1.6e-90 338.2 217 81.1
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 1.4e-86 325.1 225 69.3
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 6.9e-86 322.8 219 76.3
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 3.2e-83 313.9 229 70.7
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 3.6e-82 310.5 228 65.8
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 1.4e-81 308.5 232 68.5
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 3.9e-81 307.0 225 66.7
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 2.0e-80 304.7 217 66.8
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 1.4e-75 288.5 218 64.7
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 3.0e-73 280.8 237 63.7
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 3.9e-73 280.4 228 60.1
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 3.7e-71 273.9 233 62.7
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 2.4e-70 271.2 218 65.6
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 4.5e-69 266.9 220 59.1
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 1.3e-68 265.4 232 60.8
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 1.7e-68 265.0 205 62.9
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 3.8e-68 263.8 231 61.0
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 5.0e-68 263.5 228 62.7
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 1.1e-67 262.3 232 60.8
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 1.1e-67 262.3 228 59.6
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 4.2e-67 260.4 224 58.9
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 1.4e-65 255.4 212 63.2
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 1.4e-65 255.4 220 60.9
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 6.7e-65 253.1 231 56.3
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 2.4e-62 244.6 229 56.8
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 2.4e-62 244.6 221 60.2
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 4.1e-62 243.8 241 56.4
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 4.1e-62 243.8 230 58.7
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 5.0e-60 236.9 211 55.9
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 4.2e-59 233.8 229 56.8
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 1.0e-57 229.2 225 51.6
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 1.3e-55 222.2 231 54.1
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 1.3e-52 212.2 234 50.9
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 1.3e-52 212.2 246 48.8
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 3.8e-52 210.7 250 50.0
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 3.8e-52 210.7 244 48.4
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 5.0e-52 210.3 246 49.2
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 1.1e-51 209.1 176 57.4
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 1.5e-51 208.8 226 50.4
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 2.5e-51 208.0 211 55.0
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 2.5e-51 208.0 177 56.5
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 8.0e-50 203.0 238 48.7
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 1.8e-49 201.8 177 54.8
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 8.8e-49 199.5 176 57.4
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 2.6e-48 198.0 221 47.5
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 2.2e-47 194.9 208 51.4
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 4.8e-47 193.7 229 48.5
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.1e-46 192.6 230 48.3
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 6.6e-44 183.3 249 45.0
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 6.6e-44 183.3 208 48.6
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 1.9e-43 181.8 140 62.1
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 4.2e-43 180.6 218 46.3
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 4.2e-43 180.6 156 59.6
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 4.2e-43 180.6 144 62.5
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 7.2e-43 179.9 228 44.3
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 1.2e-42 179.1 209 51.2
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 3.6e-42 177.6 184 51.6
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 6.1e-42 176.8 184 51.6
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 8.0e-42 176.4 225 44.4
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 1.0e-41 176.0 144 60.4
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 3.0e-41 174.5 222 45.5
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 1.5e-40 172.2 209 48.8
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 2.0e-40 171.8 225 43.6
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 5.7e-40 170.2 218 45.0
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 4.9e-39 167.2 142 62.0
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 1.8e-38 165.2 141 56.0
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 1.8e-38 165.2 156 53.2
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 2.4e-38 164.9 141 55.3
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 1.2e-37 162.5 226 41.2
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 1.6e-37 162.2 154 53.2
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 4.5e-37 160.6 184 45.7
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 4.5e-37 160.6 184 45.7
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 2.3e-36 158.3 164 48.8
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 3.9e-36 157.5 143 49.7
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 8.6e-36 156.4 175 45.1
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 7.3e-35 153.3 222 41.9
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 9.5e-35 152.9 183 45.4
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 4.7e-34 150.6 159 48.4
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 6.1e-34 150.2 163 45.4
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 1.4e-33 149.1 159 47.8
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 9.8e-32 142.9 89 77.5
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 8.3e-31 139.8 227 38.3
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 9.2e-30 136.3 75 90.7
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 1.7e-23 115.5 144 49.3
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 7.8e-21 106.7 100 54.0
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 2.8e-18 98.2 86 58.1
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 1.2e-16 92.8 93 50.5
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 1.5e-16 92.4 173 32.4
Oeu048390.1 Olea europaea HOM05D000798 ORTHO05D000659 2.2e-15 88.6 165 36.4
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 1.2e-13 82.8 73 57.5
FAN07G1506 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.6e-13 82.4 71 57.7
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 3.6e-10 71.2 130 31.5
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 8.9e-09 66.6 141 26.2
Zm00001eb406750 Zea mays HOM05D025020 ORTHO05D009167 2.0e-08 65.5 139 36.0
Manes.16G011600 Manihot esculenta HOM05D007956 ORTHO05D010152 2.6e-08 65.1 151 25.8
Zm00001eb164150 Zea mays HOM05D025020 ORTHO05D009167 3.4e-08 64.7 138 36.2
Cpa.g.sc207.2 Carica papaya HOM05D007639 ORTHO05D009509 5.8e-08 63.9 133 30.1
CAN.G371.124 Capsicum annuum HOM05D007639 ORTHO05D009509 7.6e-08 63.5 128 28.1
Solyc04g079850.2 Solanum lycopersicum HOM05D007639 ORTHO05D009509 9.9e-08 63.2 128 26.6
TAR626G0036 Trochodendron aralioides HOM05D007390 ORTHO05D009114 9.9e-08 63.2 124 33.9
Potri.004G020900 Populus trichocarpa HOM05D007956 ORTHO05D010152 1.3e-07 62.8 156 26.3
Oeu002723.1 Olea europaea HOM05D007956 ORTHO05D010152 1.7e-07 62.4 176 26.7
Potri.014G040200 Populus trichocarpa HOM05D007639 ORTHO05D009509 1.7e-07 62.4 131 28.2
Manes.05G164100 Manihot esculenta HOM05D007639 ORTHO05D009509 2.2e-07 62.0 125 28.8
SEGI_33508 Sequoiadendron giganteum HOM05D006858 ORTHO05D008767 2.2e-07 62.0 154 29.2
Sopen04g033420 Solanum pennellii HOM05D007639 ORTHO05D009509 2.2e-07 62.0 128 26.6
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 2.9e-07 61.6 171 25.7
CSS0043455 Camellia sinensis var. sinensis HOM05D007639 ORTHO05D009509 3.8e-07 61.2 133 27.1
CSS0026781 Camellia sinensis var. sinensis HOM05D007639 ORTHO05D009509 4.9e-07 60.8 128 27.3
Peaxi162Scf00057g00149 Petunia axillaris HOM05D000909 ORTHO05D009509 4.9e-07 60.8 121 28.1
Duzib093G1018 Durio zibethinus HOM05D007639 ORTHO05D009509 6.4e-07 60.5 130 27.7
Zm00001eb118640 Zea mays HOM05D025020 ORTHO05D009167 6.4e-07 60.5 135 35.6
Sc17g0007100 Simmondsia chinensis HOM05D007956 ORTHO05D010152 8.4e-07 60.1 130 30.0
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.1e-06 59.7 183 28.4
CANSAT56G1376 Cannabis sativa HOM05D007956 ORTHO05D010152 1.1e-06 59.7 153 25.5
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 1.1e-06 59.7 140 28.6
PSO675G4860 Papaver somniferum HOM05D007639 ORTHO05D009509 1.1e-06 59.7 130 27.7
Sed0007352 Sechium edule HOM05D007639 ORTHO05D009509 1.4e-06 59.3 130 28.5
HanXRQChr05g0162401 Helianthus annuus HOM05D007390 ORTHO05D009114 2.4e-06 58.5 120 31.7
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 3.2e-06 58.2 118 27.1
CSS0024662 Camellia sinensis var. sinensis HOM05D007390 ORTHO05D009114 4.2e-06 57.8 124 28.2
CSS0045615 Camellia sinensis var. sinensis HOM05D007390 ORTHO05D009114 4.2e-06 57.8 124 28.2
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 4.2e-06 57.8 139 24.5
C08p19350 Brassica napus HOM05D007639 ORTHO05D009509 5.4e-06 57.4 138 27.5
COL.COLO4_27514 Corchorus olitorius HOM05D007496 ORTHO05D009479 7.1e-06 57.0 221 24.4
Gorai.009G176500 Gossypium raimondii HOM05D007956 ORTHO05D010152 9.3e-06 56.6 139 27.3
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 9.3e-06 56.6 134 28.4


User provided reference genes

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