Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 4.5e-154 548.1 330 100.0
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 5.1e-113 411.8 296 74.7
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 3.6e-111 405.6 331 74.3
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 6.4e-108 394.8 295 72.5
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 4.5e-101 372.1 332 70.5
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.9e-100 369.4 333 70.3
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 8.4e-100 367.9 331 71.3
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 3.2e-99 365.9 333 69.7
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.2e-99 365.9 333 69.7
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 7.1e-99 364.8 296 67.6
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.6e-98 363.6 332 69.3
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.6e-98 362.1 333 69.7
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.6e-98 362.1 332 68.4
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-97 360.5 297 66.7
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 1.8e-97 360.1 297 67.0
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 2.3e-97 359.8 335 69.3
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 3.0e-97 359.4 335 69.0
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 9.6e-96 354.4 295 66.4
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 6.2e-95 351.7 295 67.5
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 6.2e-95 351.7 295 65.8
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 8.2e-95 351.3 296 66.9
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 8.2e-95 351.3 296 66.6
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 3.1e-94 349.4 345 65.8
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 4.0e-94 349.0 331 69.2
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.2e-93 347.4 295 65.4
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 2.2e-92 343.2 293 64.8
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.1e-91 340.9 326 66.0
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 2.5e-91 339.7 331 66.8
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 3.2e-91 339.3 306 62.7
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.3e-89 334.0 303 63.7
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.3e-89 334.0 294 63.3
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 1.8e-89 333.6 334 66.2
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 2.3e-89 333.2 329 67.2
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.1e-88 330.9 331 66.2
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.5e-88 330.5 331 65.6
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.9e-88 330.1 338 65.1
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 7.4e-88 328.2 293 63.1
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.6e-87 327.0 333 65.2
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.6e-87 327.0 331 65.6
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 8.2e-87 324.7 304 67.4
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 2.4e-86 323.2 276 64.1
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.0e-85 320.1 292 62.0
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 2.6e-85 319.7 295 62.4
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 4.2e-83 312.4 301 64.8
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 2.4e-78 296.6 294 58.8
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 3.4e-77 292.7 291 59.8
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.2e-74 284.3 295 58.3
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.6e-74 283.9 332 62.3
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 4.7e-74 282.3 311 55.6
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.0e-73 281.2 314 55.1
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 5.1e-73 278.9 297 54.9
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 5.1e-73 278.9 295 62.0
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 7.4e-72 275.0 335 62.4
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 7.4e-72 275.0 299 55.5
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 9.7e-72 274.6 302 57.6
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 9.7e-72 274.6 293 55.6
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 9.7e-72 274.6 295 57.3
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 9.7e-72 274.6 325 52.9
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.7e-71 273.9 302 57.3
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.7e-71 273.9 295 54.6
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 3.7e-71 272.7 300 55.0
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 4.8e-71 272.3 306 54.9
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 6.3e-71 271.9 304 56.6
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 8.2e-71 271.6 332 53.0
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 8.2e-71 271.6 332 53.0
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.1e-70 271.2 300 54.7
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.1e-70 271.2 297 54.9
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 1.8e-70 270.4 297 54.5
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 2.4e-70 270.0 297 59.9
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 3.1e-70 269.6 300 53.7
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 4.1e-70 269.2 294 55.4
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 5.3e-70 268.9 294 60.9
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 9.1e-70 268.1 305 53.4
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.2e-69 267.7 286 58.0
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.6e-69 266.5 301 55.8
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 5.0e-68 262.3 293 54.9
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 6.5e-68 261.9 298 52.7
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 1.5e-67 260.8 302 54.0
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.5e-67 260.8 298 53.0
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.5e-67 260.8 298 53.0
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.9e-67 260.4 250 61.2
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 4.2e-67 259.2 307 52.4
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.2e-66 257.7 305 52.8
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.7e-66 255.8 298 51.7
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.4e-65 254.2 301 50.5
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.4e-65 254.2 295 59.0
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.3e-65 253.4 306 56.9
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 3.0e-65 253.1 296 52.4
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.1e-64 251.1 291 53.3
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.1e-64 251.1 289 55.0
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 2.0e-64 250.4 302 50.7
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 3.3e-64 249.6 291 54.3
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 4.4e-64 249.2 297 52.2
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 5.7e-64 248.8 305 52.5
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 7.4e-64 248.4 295 53.2
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 7.4e-64 248.4 299 49.5
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 7.4e-64 248.4 261 58.6
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 2.2e-63 246.9 238 58.4
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.2e-63 246.9 315 51.7
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 2.2e-63 246.9 298 52.7
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 4.8e-63 245.7 304 51.3
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 9.1e-62 241.5 277 57.4
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.6e-61 240.7 299 51.2
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 2.6e-61 240.0 294 50.3
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 3.5e-61 239.6 294 52.0
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 4.5e-61 239.2 314 50.0
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.0e-60 238.0 297 51.9
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 8.5e-60 235.0 294 52.7
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 1.1e-59 234.6 303 48.2
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.1e-59 234.6 301 51.2
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 2.5e-59 233.4 296 50.3
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 7.2e-59 231.9 287 52.3
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 2.7e-58 229.9 271 57.2
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 2.7e-58 229.9 295 47.5
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 4.7e-58 229.2 271 56.1
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 5.2e-57 225.7 301 50.5
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 5.7e-56 222.2 280 50.7
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 3.7e-55 219.5 287 48.4
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 9.1e-54 214.9 304 46.7
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.3e-52 211.1 340 41.8
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.1e-51 208.0 286 49.3
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.9e-51 207.2 212 54.7
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 5.5e-51 205.7 300 46.0
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 4.7e-50 202.6 301 46.5
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.5e-48 197.6 123 80.5
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.5e-48 197.6 305 45.9
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.4e-48 196.1 253 47.4
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.8e-46 190.7 231 48.1
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.7e-45 186.8 227 48.5
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.3e-44 184.5 303 44.2
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 3.8e-44 183.0 122 73.8
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 3.8e-44 183.0 297 41.4
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 8.6e-44 181.8 122 71.3
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.9e-43 180.6 187 55.6
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.8e-42 176.8 316 41.1
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.6e-40 170.2 189 51.3
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 3.7e-39 166.4 296 43.2
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 6.3e-39 165.6 122 70.5
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.0e-37 160.6 292 39.4
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 5.0e-36 156.0 284 40.1
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.9e-35 154.1 116 69.0
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.8e-33 147.5 116 59.5
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.8e-33 147.5 116 59.5
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 3.1e-33 146.7 244 44.3
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 4.4e-32 142.9 129 65.1
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.7e-31 141.0 115 60.0
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.2e-31 140.6 115 60.9
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 2.4e-30 137.1 297 36.7
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 5.4e-30 136.0 298 36.6
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 6.0e-29 132.5 77 81.8
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.7e-28 131.0 292 35.6
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 5.6e-27 125.9 284 35.2
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 4.0e-25 119.8 109 52.3
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 4.1e-22 109.8 185 43.2
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.7e-15 86.7 109 55.0
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 8.4e-15 85.5 135 45.9
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 3.2e-14 83.6 154 41.6
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.1e-11 75.1 57 63.2
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.3e-11 73.6 48 68.8
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 3.3e-11 73.6 104 48.1
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 9.6e-11 72.0 56 71.4
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 2.8e-10 70.5 160 40.6
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 2.8e-10 70.5 112 42.9
Medtr7g114200 Medicago truncatula HOM05D063531 ORTHO05D005140 2.2e-07 60.8 40 67.5


User provided reference genes

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