Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 3.1e-173 611.7 303 100.0
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 1.5e-127 459.9 262 86.6
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 9.7e-127 457.2 263 85.9
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 1.8e-120 436.4 246 83.7
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 8.0e-113 411.0 249 79.1
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 5.7e-111 404.8 249 79.5
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 1.4e-109 400.2 249 79.5
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 1.8e-109 399.8 258 74.8
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 2.4e-109 399.4 249 77.1
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 3.1e-109 399.1 249 79.1
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 4.1e-109 398.7 250 80.4
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 4.1e-109 398.7 249 76.7
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 5.3e-109 398.3 248 75.4
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 2.0e-108 396.4 249 77.1
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 2.7e-108 396.0 249 78.3
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 3.5e-108 395.6 248 75.0
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 7.7e-108 394.4 249 75.9
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.7e-107 393.3 249 75.9
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 1.7e-107 393.3 258 73.6
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 2.2e-107 392.9 249 77.5
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.9e-107 392.5 249 77.9
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 2.9e-107 392.5 258 74.8
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 3.8e-107 392.1 248 77.8
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 8.5e-107 391.0 258 72.9
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.5e-107 391.0 249 77.5
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.1e-106 390.6 249 77.5
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.1e-106 390.6 249 75.1
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 1.5e-106 390.2 249 76.7
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.5e-106 390.2 249 76.7
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.5e-106 390.2 249 77.5
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.5e-106 389.4 249 77.1
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 2.5e-106 389.4 250 76.8
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 2.5e-106 389.4 250 76.4
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.8e-104 383.3 248 73.8
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 4.0e-104 382.1 250 74.8
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 8.8e-104 380.9 249 74.7
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.8e-104 380.9 245 76.3
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.8e-104 380.9 245 76.3
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 1.2e-103 380.6 251 74.5
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.5e-103 380.2 250 76.0
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.0e-103 379.8 249 75.5
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 3.4e-103 379.0 251 73.7
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 4.4e-103 378.6 245 75.9
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 5.7e-103 378.3 251 73.3
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 7.5e-103 377.9 251 73.3
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.3e-102 377.1 249 73.1
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.7e-102 376.7 249 75.1
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 1.7e-102 376.7 250 73.6
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 2.8e-102 375.9 249 74.7
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 2.8e-102 375.9 249 72.7
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 4.8e-102 375.2 251 72.1
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 6.3e-102 374.8 249 72.3
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.8e-101 373.2 249 70.7
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 1.8e-101 373.2 248 71.0
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.8e-101 373.2 249 71.1
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 1.8e-101 373.2 251 72.9
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 2.4e-101 372.9 249 71.9
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 9.1e-101 370.9 251 72.1
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 9.1e-101 370.9 249 72.3
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 9.1e-101 370.9 249 71.9
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 1.2e-100 370.5 251 72.5
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.6e-100 370.2 245 71.8
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.6e-100 370.2 249 71.9
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 2.0e-100 369.8 249 71.9
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 2.0e-100 369.8 249 71.9
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 3.5e-100 369.0 248 71.8
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 4.5e-100 368.6 249 71.5
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 7.7e-100 367.9 249 70.3
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 7.7e-100 367.9 249 70.7
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.0e-99 367.5 252 69.4
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.3e-99 367.1 249 70.7
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.3e-99 367.1 249 71.5
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 1.7e-99 366.7 249 71.5
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 1.7e-99 366.7 249 70.7
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.7e-99 366.7 249 70.3
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.7e-99 366.7 249 70.7
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 3.8e-99 365.5 249 70.3
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 5.0e-99 365.2 251 71.7
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.1e-98 364.0 260 69.2
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.1e-98 364.0 248 71.8
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.5e-98 363.6 249 69.9
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 1.9e-98 363.2 251 71.7
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 2.5e-98 362.8 250 71.2
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 4.2e-98 362.1 251 69.3
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 9.5e-98 360.9 249 70.7
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 1.6e-97 360.1 246 68.7
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 4.7e-97 358.6 249 67.9
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 6.1e-97 358.2 251 70.9
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 1.0e-96 357.5 249 69.5
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.0e-96 357.5 249 67.5
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 1.0e-96 357.5 252 68.3
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.4e-96 357.1 242 70.2
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 2.3e-96 356.3 249 68.7
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.5e-95 353.6 251 66.1
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.0e-95 353.2 249 68.3
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 2.0e-95 353.2 245 69.4
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 3.4e-95 352.4 243 70.0
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 3.4e-95 352.4 243 70.0
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 3.4e-95 352.4 249 69.9
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 4.4e-95 352.1 249 67.9
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.7e-94 350.1 248 67.3
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 1.7e-94 350.1 252 69.4
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.2e-94 349.7 250 66.0
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 8.3e-94 347.8 245 67.8
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 1.4e-93 347.1 248 66.9
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 3.1e-93 345.9 273 63.7
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 3.1e-93 345.9 273 63.7
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.1e-93 345.9 249 65.9
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 9.2e-93 344.4 252 66.7
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.7e-92 342.8 249 63.9
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 8.6e-91 337.8 225 73.8
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 5.2e-88 328.6 291 59.5
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.2e-87 327.4 249 65.1
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.0e-87 326.6 241 65.1
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 3.4e-87 325.9 293 59.0
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.4e-87 325.5 241 65.1
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 4.9e-86 322.0 237 66.7
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 4.6e-84 315.5 249 63.1
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 5.9e-84 315.1 249 62.2
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 5.9e-84 315.1 238 63.0
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 2.3e-83 313.2 183 82.0
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 3.0e-83 312.8 243 64.2
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 8.6e-83 311.2 201 74.6
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 1.6e-81 307.0 257 61.1
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 6.8e-80 301.6 253 58.9
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 2.9e-78 296.2 206 70.4
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 8.3e-78 294.7 245 60.4
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 7.8e-76 288.1 249 59.8
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.1e-74 284.3 243 60.5
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 4.3e-74 282.3 174 76.4
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.4e-69 265.4 182 73.1
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.9e-66 256.9 152 78.9
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 4.7e-65 252.3 234 51.7
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 8.9e-64 248.1 186 65.6
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 2.0e-63 246.9 147 80.3
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 2.0e-63 246.9 147 80.3
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 5.8e-55 218.8 177 57.6
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 1.6e-52 210.7 174 60.9
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 2.9e-46 189.9 188 54.3
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 2.9e-46 189.9 188 54.3
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 1.1e-45 188.0 191 52.9
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 3.7e-41 172.9 157 50.3
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 1.4e-40 171.0 110 73.6
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 1.1e-34 151.4 132 55.3
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.6e-34 149.1 87 79.3
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 6.0e-28 129.0 73 83.6
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 3.3e-26 123.2 73 79.5
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 9.7e-26 121.7 174 38.5
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 6.9e-24 115.5 63 82.5
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 3.8e-22 109.8 181 35.9
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 8.5e-22 108.6 100 59.0
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 8.5e-22 108.6 100 59.0
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 3.2e-21 106.7 76 71.1
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 4.2e-21 106.3 107 56.1
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 1.9e-13 80.9 93 51.6
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 5.5e-13 79.3 83 55.4
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 3.3e-10 70.1 52 65.4
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 7.4e-10 68.9 236 27.5
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 3.7e-09 66.6 54 66.7
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 8.2e-09 65.5 184 28.8
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 9.1e-08 62.0 65 52.3
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.3e-06 58.2 38 71.1
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 5.0e-06 56.2 44 56.8
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 5.0e-06 56.2 202 24.3


User provided reference genes

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