Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p000930 Quercus lobata HOM05D000003 ORTHO05D000022 2.7e-105 385.2 175 100.0
QL09p049906 Quercus lobata HOM05D000003 ORTHO05D000022 9.0e-85 317.0 157 90.4
QL03p010769 Quercus lobata HOM05D000155 ORTHO05D000022 1.8e-48 196.4 91 96.7
QL01p007248 Quercus lobata HOM05D000003 ORTHO05D000022 1.5e-34 150.2 178 41.0
QL02p092030 Quercus lobata HOM05D000003 ORTHO05D000022 1.3e-30 137.1 163 38.0
QL04p014896 Quercus lobata HOM05D000003 ORTHO05D000022 8.1e-25 117.9 155 37.4
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 2.3e-24 116.3 174 36.2
QL02p075356 Quercus lobata HOM05D000155 ORTHO05D000022 3.0e-19 99.4 60 71.7
QL08p019214 Quercus lobata HOM05D016036 ORTHO05D000022 1.1e-18 97.4 133 36.8
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 4.3e-18 95.5 182 30.8
AUR62034895 Chenopodium quinoa HOM05D000003 ORTHO05D000022 2.1e-17 93.2 182 31.3
QL02p058259 Quercus lobata HOM05D000155 ORTHO05D000022 8.1e-17 91.3 113 37.2
QL93p0100_0664 Quercus lobata HOM05D000155 ORTHO05D000022 8.1e-17 91.3 113 37.2
QL05p015875 Quercus lobata HOM05D000003 ORTHO05D000004 1.8e-16 90.1 101 40.6
QL05p021050 Quercus lobata HOM05D000003 ORTHO05D011148 5.2e-16 88.6 125 33.6
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 5.2e-16 88.6 165 32.7
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 8.9e-16 87.8 179 31.8
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 2.9e-14 82.8 176 30.7
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 2.9e-14 82.8 175 31.4
QL03p062046 Quercus lobata HOM05D000155 ORTHO05D000022 8.4e-14 81.3 108 37.0
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 3.2e-13 79.3 156 26.9
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.1e-13 78.2 176 30.7
Aqoxy1G03355 Aquilegia oxysepala HOM05D000003 ORTHO05D000022 9.2e-13 77.8 178 27.0
CSS0048939 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.6e-12 77.0 175 30.3
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 1.6e-12 77.0 174 25.3
QL04p025475 Quercus lobata HOM05D000003 ORTHO05D000004 2.1e-12 76.6 125 34.4
CSS0009370 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.7e-12 76.3 176 30.1
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 2.7e-12 76.3 169 27.2
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 2.7e-12 76.3 168 29.8
TAR131G0003 Trochodendron aralioides HOM05D000003 ORTHO05D011990 2.7e-12 76.3 185 28.6
AUR62030044 Chenopodium quinoa HOM05D017440 ORTHO05D000022 3.5e-12 75.9 159 29.6
QL10p038260 Quercus lobata HOM05D041066 ORTHO05D000022 6.0e-12 75.1 85 38.8
Aqoxy4G01667 Aquilegia oxysepala HOM05D000003 ORTHO05D000022 7.8e-12 74.7 183 25.1
Lj4g0027011 Lotus japonicus HOM05D000003 ORTHO05D000022 7.8e-12 74.7 176 27.8
QL02p101100 Quercus lobata HOM05D041066 ORTHO05D000022 1.0e-11 74.3 86 34.9
SGA_v2.0_scaffold245G44469 Striga asiatica HOM05D000003 ORTHO05D000022 1.7e-11 73.6 172 27.9
CSS0038564 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.0e-11 72.8 178 25.8
LjContig00408g0000741 Lotus japonicus HOM05D000003 ORTHO05D001390 3.0e-11 72.8 174 30.5
QL11p015220 Quercus lobata HOM05D000021 ORTHO05D000010 3.0e-11 72.8 86 40.7
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.9e-11 72.4 178 28.7
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.1e-11 72.0 178 28.7
Lj4g0023123 Lotus japonicus HOM05D000003 ORTHO05D000004 5.1e-11 72.0 179 29.1
Aqoxy3G02146 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.6e-11 71.2 179 25.7
Aa31LG4G10800 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.5e-10 70.5 172 27.9
Aa31LG7G2740 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.5e-10 70.5 172 26.7
Aqoxy1G03455 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.9e-10 70.1 190 25.8
Aa31sc17G250 Aethionema arabicum HOM05D000003 ORTHO05D009772 2.5e-10 69.7 148 31.1
BcaC01g02801 Brassica carinata HOM05D000003 ORTHO05D000004 2.5e-10 69.7 147 32.0
Glyma.07G238550 Glycine max HOM05D000003 ORTHO05D000004 2.5e-10 69.7 175 28.0
LjContig00357g0004525 Lotus japonicus HOM05D000003 ORTHO05D000022 2.5e-10 69.7 174 25.9
COL.COLO4_25805 Corchorus olitorius HOM05D025667 ORTHO05D000004 3.3e-10 69.3 125 30.4
PSO591G0449 Papaver somniferum HOM05D000155 ORTHO05D000022 3.3e-10 69.3 175 27.4
QL07p031943 Quercus lobata HOM05D000155 ORTHO05D000022 3.3e-10 69.3 70 41.4
Aa31LG5G20940 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.3e-10 68.9 175 26.3
COL.COLO4_20501 Corchorus olitorius HOM05D000003 ORTHO05D000004 9.6e-10 67.8 113 34.5
LjContig00408g0023232 Lotus japonicus HOM05D000003 ORTHO05D000004 9.6e-10 67.8 187 27.8
BcaB03g16821 Brassica carinata HOM05D000003 ORTHO05D001498 1.2e-09 67.4 167 29.3
Aa31LG11G5340 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-09 67.0 175 28.6
Aqoxy7G02241 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.6e-09 67.0 179 25.1
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 2.1e-09 66.6 178 25.3
BcaC06g35181 Brassica carinata HOM05D000003 ORTHO05D000004 2.8e-09 66.2 140 28.6
CiPaw.11G073400 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.8e-09 66.2 143 25.9
CiPaw.14G039600 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.8e-09 66.2 180 25.6
Dinv08373 Davidia involucrata HOM05D000003 ORTHO05D029248 2.8e-09 66.2 158 29.1
RcHm_v2.0_Chr4g0402201 Rosa chinensis HOM05D000003 ORTHO05D000004 2.8e-09 66.2 182 26.9
BcaC05g25416 Brassica carinata HOM05D000003 ORTHO05D000004 3.6e-09 65.9 140 27.9
AUR62019983 Chenopodium quinoa HOM05D000577 ORTHO05D001093 3.6e-09 65.9 150 30.7
QL01p031236 Quercus lobata HOM05D000003 ORTHO05D000004 4.7e-09 65.5 96 34.4
AT5G42905 Arabidopsis thaliana HOM05D000003 ORTHO05D000022 6.2e-09 65.1 143 35.7
EL10Ac1g01979 Beta vulgaris HOM05D013665 ORTHO05D011148 6.2e-09 65.1 115 32.2
MD06G1107000 Malus domestica HOM05D000003 ORTHO05D000004 8.1e-09 64.7 189 25.9
Nitab4.5_0007709g0030 Nicotiana tabacum HOM05D009389 ORTHO05D012243 8.1e-09 64.7 138 29.7
TAR211G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 8.1e-09 64.7 177 27.1
BraA02t07551Z Brassica rapa HOM05D000003 ORTHO05D000004 1.1e-08 64.3 116 29.3
Aqoxy1G01582 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.4e-08 63.9 185 26.5
AUR62034864 Chenopodium quinoa HOM05D000295 ORTHO05D000022 1.4e-08 63.9 94 39.4
BcaB04g16926 Brassica carinata HOM05D000003 ORTHO05D001498 1.8e-08 63.5 115 32.2
BcaC09g48852 Brassica carinata HOM05D000003 ORTHO05D001498 1.8e-08 63.5 120 32.5
CANSAT01G3235 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-08 63.5 179 30.2
CARHR145030 Cardamine hirsuta HOM05D000003 ORTHO05D000022 1.8e-08 63.5 162 28.4
PSO063G7282 Papaver somniferum HOM05D000003 ORTHO05D001026 2.4e-08 63.2 160 26.9
BcaC02g09541 Brassica carinata HOM05D000003 ORTHO05D001498 3.1e-08 62.8 115 31.3
MD08G1205700 Malus domestica HOM05D000003 ORTHO05D000004 3.1e-08 62.8 189 26.5
Nitab4.5_0005020g0020 Nicotiana tabacum HOM05D009389 ORTHO05D012243 3.1e-08 62.8 113 29.2
TAR648G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000004 3.1e-08 62.8 176 27.3
FvH4_6g09211 Fragaria vesca HOM05D000003 ORTHO05D000651 4.0e-08 62.4 198 26.3
Aa31LG9G9420 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.2e-08 62.0 173 26.0
Aa31sc128G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.2e-08 62.0 180 26.1
Aa31sc248G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.2e-08 62.0 180 26.1
CSS0026168 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 5.2e-08 62.0 98 32.7
MBI04_g42251_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.2e-08 62.0 91 36.3
QL02p071422 Quercus lobata HOM05D000003 ORTHO05D000006 5.2e-08 62.0 33 78.8
Peaxi162Scf00022g00105 Petunia axillaris HOM05D005774 ORTHO05D004636 6.8e-08 61.6 107 34.6
Aa31LG1G4180 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.9e-08 61.2 177 27.7
Aa31LG7G12310 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.9e-08 61.2 180 25.0
QL05p027737 Quercus lobata HOM05D025667 ORTHO05D012243 8.9e-08 61.2 122 30.3
Cpa.g.sc81.77 Carica papaya HOM05D015157 ORTHO05D011148 1.2e-07 60.8 108 32.4
LjContig00310g0023480 Lotus japonicus HOM05D000003 ORTHO05D000004 1.2e-07 60.8 125 25.6
Aqoxy7G01908 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 1.5e-07 60.5 198 24.7
BcaB01g06093 Brassica carinata HOM05D000003 ORTHO05D001498 1.5e-07 60.5 168 25.0
Lj6g0001642 Lotus japonicus HOM05D000003 ORTHO05D000167 1.5e-07 60.5 116 31.0
BcaB05g21914 Brassica carinata HOM05D000003 ORTHO05D001498 2.0e-07 60.1 154 24.7
CANSAT54G0106 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-07 60.1 126 34.1
Lj1g0013654 Lotus japonicus HOM05D000155 ORTHO05D000022 2.0e-07 60.1 147 29.3
Aqoxy6G01821 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 2.6e-07 59.7 195 25.1
Aqoxy7G02019 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.4e-07 59.3 195 22.6
CiPaw.15G051200 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.4e-07 59.3 158 24.7
Aqoxy1G02708 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 4.4e-07 58.9 172 24.4
BcaB05g22683 Brassica carinata HOM05D000003 ORTHO05D001498 4.4e-07 58.9 165 24.8
BolC3t15869H Brassica oleracea HOM05D000003 ORTHO05D000004 4.4e-07 58.9 119 29.4
CARHR214930 Cardamine hirsuta HOM05D000003 ORTHO05D001091 4.4e-07 58.9 115 28.7
COL.COLO4_28522 Corchorus olitorius HOM05D000003 ORTHO05D000126 4.4e-07 58.9 176 25.0
CiPaw.05G068400 Carya illinoinensis HOM05D000003 ORTHO05D000004 5.8e-07 58.5 164 24.4
Sp6g13220 Schrenkiella parvula HOM05D000003 ORTHO05D000006 5.8e-07 58.5 136 25.7
Sp6g38460 Schrenkiella parvula HOM05D000003 ORTHO05D009772 5.8e-07 58.5 130 30.0
SGA_v2.0_scaffold420G51381 Striga asiatica HOM05D000003 ORTHO05D000022 5.8e-07 58.5 171 24.0
Thecc.01G193900 Theobroma cacao HOM05D015157 ORTHO05D011148 5.8e-07 58.5 107 30.8
Aa31LG5G21260 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.6e-07 58.2 177 23.7
Aqoxy2G01899 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 7.6e-07 58.2 193 23.3
CiPaw.15G109000 Carya illinoinensis HOM05D000003 ORTHO05D000004 7.6e-07 58.2 164 25.6
Lj1g0000509 Lotus japonicus HOM05D000003 ORTHO05D000004 7.6e-07 58.2 186 24.7
SHI53806 Sapria himalayana HOM05D004990 ORTHO05D000022 7.6e-07 58.2 175 27.4
Aa31LG3G3940 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.9e-07 57.8 152 27.6
BcaB08g35769 Brassica carinata HOM05D000003 ORTHO05D001498 9.9e-07 57.8 166 23.5
FvH4_5g38601 Fragaria vesca HOM05D000003 ORTHO05D000651 9.9e-07 57.8 186 28.0
PSO133G0054 Papaver somniferum HOM05D000003 ORTHO05D000004 9.9e-07 57.8 152 24.3
BolC2t11594H Brassica oleracea HOM05D000003 ORTHO05D001498 1.3e-06 57.4 112 30.4
CSS0036731 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.3e-06 57.4 142 28.9
CiPaw.06G052300 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.3e-06 57.4 117 29.1
PSO675G4590 Papaver somniferum HOM05D012095 ORTHO05D013621 1.3e-06 57.4 161 28.0
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 1.7e-06 57.0 169 25.4
PSO081G0047 Papaver somniferum HOM05D000003 ORTHO05D001026 1.7e-06 57.0 115 27.8
Aa31sc555G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.2e-06 56.6 153 26.1
COL.COLO4_01156 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.2e-06 56.6 109 28.4
Psat4g044960 Pisum sativum HOM05D000003 ORTHO05D012377 2.2e-06 56.6 171 24.0
Thecc.04G008500 Theobroma cacao HOM05D000088 ORTHO05D000830 2.2e-06 56.6 102 30.4
Aa31LG1G9570 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.9e-06 56.2 178 29.2
CARHR213150 Cardamine hirsuta HOM05D000003 ORTHO05D000022 2.9e-06 56.2 119 31.1
Aqoxy6G01520 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.8e-06 55.8 171 25.7
Aqoxy7G02362 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.8e-06 55.8 180 26.1
PSO210G6886 Papaver somniferum HOM05D000003 ORTHO05D001026 3.8e-06 55.8 116 25.0
RcHm_v2.0_Chr1g0326401 Rosa chinensis HOM05D000003 ORTHO05D000004 3.8e-06 55.8 129 30.2
Aa31sc42G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.9e-06 55.5 114 32.5
Lj2g0021189 Lotus japonicus HOM05D000003 ORTHO05D000004 4.9e-06 55.5 120 25.0
BcaB04g17562 Brassica carinata HOM05D000003 ORTHO05D001498 6.4e-06 55.1 108 28.7
BcaC04g21635 Brassica carinata HOM05D000003 ORTHO05D001498 6.4e-06 55.1 108 29.6
TWI36G1780 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 6.4e-06 55.1 174 25.9
Aa31LG8G11190 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.4e-06 54.7 116 28.4
Aa31LG9G3910 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.4e-06 54.7 123 27.6
Manes.18G048050 Manihot esculenta HOM05D000003 ORTHO05D011148 8.4e-06 54.7 82 34.1


User provided reference genes

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