Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 2.3e-229 798.5 393 100.0
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 1.7e-176 622.9 350 89.7
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 5.0e-176 621.3 428 71.3
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 1.0e-173 613.6 431 71.7
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 1.8e-173 612.8 428 71.3
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 8.3e-171 604.0 429 69.9
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 3.2e-170 602.1 428 69.2
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 4.1e-170 601.7 428 69.9
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 9.2e-170 600.5 436 69.7
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 2.7e-169 599.0 428 68.7
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 1.3e-168 596.7 419 69.9
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 6.6e-168 594.3 431 68.9
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.1e-167 593.6 433 68.4
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 1.9e-167 592.8 428 68.5
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 3.3e-167 592.0 424 70.3
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 4.3e-167 591.7 429 68.3
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 4.3e-167 591.7 433 67.9
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 9.5e-167 590.5 421 67.9
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.6e-166 589.7 433 67.9
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 1.2e-164 583.6 412 69.4
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 2.6e-164 582.4 413 69.0
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 2.2e-163 579.3 430 65.6
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 1.9e-162 576.2 420 68.8
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 1.9e-162 576.2 429 67.4
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 5.4e-162 574.7 433 66.3
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 6.0e-161 571.2 437 64.8
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 6.0e-161 571.2 428 65.9
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 1.7e-160 569.7 431 66.6
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 5.1e-160 568.2 420 67.1
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 5.6e-159 564.7 431 66.6
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 1.2e-158 563.5 430 65.6
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.6e-158 563.1 420 66.7
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 2.1e-158 562.8 448 64.5
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 2.8e-158 562.4 425 65.9
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 3.6e-158 562.0 428 63.3
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 5.2e-157 558.1 415 65.1
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 2.6e-156 555.8 429 65.5
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 3.4e-156 555.4 430 65.1
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 3.4e-156 555.4 430 64.2
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 5.8e-156 554.7 428 63.3
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 1.7e-155 553.1 417 65.2
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 1.2e-153 547.0 419 65.9
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 2.1e-153 546.2 429 64.8
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 4.6e-153 545.0 461 62.7
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 1.3e-152 543.5 428 62.4
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 8.6e-152 540.8 413 64.2
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 1.5e-151 540.0 413 65.6
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 2.5e-151 539.3 429 63.9
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 4.3e-151 538.5 422 65.2
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 9.6e-151 537.3 433 62.4
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 9.6e-151 537.3 414 65.7
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 1.6e-150 536.6 437 61.6
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 2.1e-150 536.2 415 62.4
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 3.6e-150 535.4 414 65.2
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 3.6e-150 535.4 415 64.6
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 3.6e-150 535.4 423 64.8
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 4.7e-150 535.0 428 64.3
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 6.2e-150 534.6 415 64.1
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 6.2e-150 534.6 432 64.4
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 6.2e-150 534.6 430 61.6
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 8.1e-150 534.3 422 64.2
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 8.1e-150 534.3 413 62.5
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 8.1e-150 534.3 423 62.9
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 1.1e-149 533.9 413 64.6
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-149 533.9 428 64.0
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 1.1e-149 533.9 404 67.3
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 1.4e-149 533.5 414 65.0
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 1.8e-149 533.1 415 65.3
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 4.0e-149 531.9 432 63.7
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 4.0e-149 531.9 428 64.0
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 4.0e-149 531.9 417 63.3
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 5.2e-149 531.6 428 62.1
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 8.9e-149 530.8 428 61.4
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 1.2e-148 530.4 422 64.5
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 1.5e-148 530.0 436 62.6
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 4.4e-148 528.5 414 65.2
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 4.4e-148 528.5 414 65.2
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 4.4e-148 528.5 430 60.7
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 7.6e-148 527.7 427 62.8
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.2e-147 526.2 414 62.6
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.4e-146 523.5 408 61.5
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 2.4e-146 522.7 414 62.1
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 1.2e-145 520.4 434 59.9
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 1.2e-145 520.4 425 60.2
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 2.7e-145 519.2 426 59.9
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 1.0e-144 517.3 410 62.2
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.7e-144 516.5 417 60.9
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.9e-144 515.4 420 61.0
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.1e-143 513.8 417 60.4
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 1.9e-143 513.1 413 61.0
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.9e-143 513.1 420 60.5
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.9e-143 513.1 420 60.5
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 4.3e-143 511.9 434 60.4
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 9.6e-143 510.8 410 62.0
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.1e-141 507.3 411 62.0
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 2.4e-141 506.1 423 60.0
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 3.1e-141 505.8 424 59.7
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 6.9e-141 504.6 435 59.5
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 7.6e-140 501.1 398 63.3
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 2.2e-139 499.6 410 60.2
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 6.4e-139 498.0 429 58.5
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 8.4e-139 497.7 433 58.9
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 7.1e-138 494.6 432 58.1
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 8.1e-134 481.1 433 57.3
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 9.0e-133 477.6 435 57.5
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 9.0e-133 477.6 431 57.3
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 1.6e-129 466.8 430 54.7
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 8.7e-128 461.1 436 56.4
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 2.6e-124 449.5 430 51.4
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 3.4e-124 449.1 411 56.2
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 3.4e-124 449.1 430 51.2
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.8e-120 436.8 416 54.3
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 6.7e-120 434.9 409 53.5
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.3e-118 430.6 417 55.6
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.3e-118 430.6 414 51.9
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 6.9e-117 424.9 449 49.0
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.3e-115 420.6 391 52.4
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 2.5e-114 416.4 285 70.2
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 2.7e-113 412.9 415 49.9
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.3e-110 404.1 393 54.5
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 3.8e-107 392.5 288 66.0
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 6.1e-105 385.2 384 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 6.5e-99 365.2 431 47.1
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 3.6e-97 359.4 393 47.3
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 1.0e-91 341.3 396 45.2
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 4.0e-88 329.3 424 46.2
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 2.7e-84 316.6 417 40.3
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.7e-84 316.6 342 46.5
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.7e-84 316.6 259 58.3
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 8.0e-81 305.1 225 64.9
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 2.3e-80 303.5 239 64.4
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 6.3e-78 295.4 424 40.3
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.7e-76 290.0 378 41.3
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 1.0e-64 251.5 263 53.6
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 4.4e-55 219.5 153 68.0
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 5.8e-47 192.6 253 43.5
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.7e-46 191.0 134 67.2
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.7e-43 181.0 130 65.4
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 3.9e-43 179.9 112 73.2
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-39 168.3 146 59.6
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 4.9e-38 162.9 126 67.5
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 3.0e-35 153.7 157 52.2
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-33 148.3 144 59.0
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 4.4e-31 139.8 375 28.3
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.3e-27 128.3 122 51.6
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 4.9e-22 109.8 88 65.9
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 3.9e-19 100.1 80 65.0
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 5.1e-19 99.8 94 60.6
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 2.5e-18 97.4 78 59.0
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.3e-18 97.1 79 60.8
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 9.6e-18 95.5 67 64.2
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 2.8e-17 94.0 158 39.2
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.8e-16 91.3 90 50.0
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 5.3e-16 89.7 64 67.2
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-15 87.8 71 59.2
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 6.4e-14 82.8 112 40.2
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.1e-13 82.0 57 68.4
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 3.9e-11 73.6 60 56.7
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 4.3e-10 70.1 74 51.4
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 3.1e-08 63.9 59 61.0
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-07 61.6 56 62.5
Cpa.g.c45316 Carica papaya HOM05D004203 ORTHO05D004830 7.6e-07 59.3 40 65.0


User provided reference genes

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