Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 7.7e-65 250.4 129 100.0
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 9.1e-50 200.3 129 83.7
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 2.2e-43 179.1 129 76.7
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 3.5e-41 171.8 129 70.5
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 2.9e-40 168.7 129 71.3
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 6.5e-40 167.5 129 69.0
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 5.5e-39 164.5 129 69.8
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 7.2e-39 164.1 116 72.4
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 7.2e-39 164.1 117 72.6
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 1.2e-38 163.3 115 74.8
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 2.1e-38 162.5 122 71.3
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.6e-38 161.8 127 70.1
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 3.6e-38 161.8 130 69.2
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 4.7e-38 161.4 122 69.7
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 1.4e-37 159.8 129 68.2
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 3.0e-37 158.7 127 68.5
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.0e-37 158.7 127 69.3
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 5.2e-37 157.9 122 68.0
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 1.2e-36 156.8 115 68.7
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 1.5e-36 156.4 128 67.2
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 2.6e-36 155.6 129 66.7
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 5.7e-36 154.5 131 61.8
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 5.7e-36 154.5 117 70.9
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 2.8e-35 152.1 130 65.4
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 6.3e-35 151.0 129 65.1
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 1.1e-34 150.2 138 63.0
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 1.1e-34 150.2 128 62.5
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 1.4e-34 149.8 130 64.6
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 4.1e-34 148.3 122 65.6
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 9.1e-34 147.1 140 60.0
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 1.2e-33 146.7 120 63.3
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 2.0e-33 146.0 138 60.1
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 4.5e-33 144.8 130 65.4
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 4.5e-33 144.8 132 63.6
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 7.7e-33 144.1 129 58.9
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 2.3e-32 142.5 128 60.9
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 1.1e-31 140.2 129 62.8
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 1.5e-31 139.8 124 60.5
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 1.9e-31 139.4 129 59.7
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 2.5e-31 139.0 126 56.3
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 3.2e-31 138.7 134 57.5
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 9.5e-31 137.1 116 62.9
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 1.2e-30 136.7 112 63.4
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 1.2e-30 136.7 125 61.6
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 3.6e-30 135.2 115 63.5
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.0e-29 133.7 125 59.2
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 1.4e-29 133.3 130 60.8
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.8e-29 132.9 129 55.0
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.8e-29 132.9 129 55.0
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 2.3e-29 132.5 129 56.6
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 4.0e-29 131.7 105 64.8
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 5.2e-29 131.3 129 58.9
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 8.8e-29 130.6 115 61.7
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.2e-28 130.2 115 61.7
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 1.2e-28 130.2 124 55.6
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 2.0e-28 129.4 130 58.5
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 2.0e-28 129.4 122 57.4
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.4e-28 128.6 115 60.0
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 5.7e-28 127.9 137 50.4
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 7.5e-28 127.5 104 62.5
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 7.5e-28 127.5 130 58.5
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 1.7e-27 126.3 112 61.6
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 2.8e-27 125.6 112 58.9
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.7e-27 125.2 115 60.9
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 3.7e-27 125.2 115 59.1
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 4.9e-27 124.8 114 61.4
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.4e-26 123.2 139 48.2
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 2.4e-26 122.5 114 60.5
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 4.1e-26 121.7 130 56.9
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.2e-25 120.2 126 58.7
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 1.6e-25 119.8 122 60.7
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.6e-25 119.8 136 50.0
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 2.0e-25 119.4 129 55.8
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 7.8e-25 117.5 115 56.5
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 1.0e-24 117.1 129 56.6
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 1.7e-24 116.3 114 58.8
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.7e-24 116.3 115 56.5
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 2.5e-23 112.5 126 54.0
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 2.5e-23 112.5 127 55.9
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 2.5e-23 112.5 126 54.0
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 2.5e-23 112.5 126 54.0
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 2.5e-23 112.5 104 55.8
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 3.3e-23 112.1 124 51.6
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 2.8e-22 109.0 126 54.0
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 2.8e-22 109.0 115 55.7
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 8.0e-22 107.5 85 69.4
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 1.0e-21 107.1 85 69.4
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 1.0e-21 107.1 130 47.7
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 1.8e-21 106.3 129 52.7
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 1.8e-21 106.3 129 52.7
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 2.3e-21 105.9 125 52.0
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 4.0e-21 105.1 127 54.3
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 4.0e-21 105.1 129 54.3
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 4.0e-21 105.1 117 49.6
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 8.9e-21 104.0 108 58.3
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 5.7e-20 101.3 173 40.5
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 7.5e-20 100.9 110 55.5
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 9.8e-20 100.5 127 46.5
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 3.7e-19 98.6 79 65.8
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 4.1e-18 95.1 68 70.6
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 2.7e-17 92.4 116 49.1
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 2.3e-16 89.4 82 64.6
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 6.6e-16 87.8 130 45.4
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 3.3e-15 85.5 113 54.9
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 7.3e-15 84.3 85 61.2
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 7.3e-15 84.3 69 65.2
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 7.3e-15 84.3 69 65.2
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.8e-14 82.4 135 41.5
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 1.8e-13 79.7 133 42.9
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 2.3e-13 79.3 120 42.5
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 1.5e-12 76.6 131 42.0
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 8.3e-11 70.9 51 76.5
COL.COLO4_21663 Corchorus olitorius HOM05D006753 ORTHO05D008521 5.4e-10 68.2 85 54.1
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 1.6e-09 66.6 151 33.1
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 1.5e-07 60.1 123 35.8
CBR_g16096 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-07 59.7 98 37.8
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 5.6e-07 58.2 27 92.6
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 2.8e-06 55.8 47 48.9
MCO15G305 Micromonas commoda HOM05D006753 ORTHO05D008521 2.8e-06 55.8 49 46.9
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 6.2e-06 54.7 88 37.5
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 6.2e-06 54.7 105 35.2
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 6.2e-06 54.7 52 48.1
Actinidia10880 Actinidia chinensis HOM05D005384 ORTHO05D006477 8.1e-06 54.3 52 48.1
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 8.1e-06 54.3 71 40.8
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 8.1e-06 54.3 51 49.0
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 8.1e-06 54.3 107 35.5


User provided reference genes

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