Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 8.9e-292 1006.1 483 100.0
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 1.6e-195 686.4 486 70.8
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 2.9e-165 585.9 479 60.5
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 3.8e-165 585.5 479 59.9
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 3.2e-164 582.4 488 61.7
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 1.1e-156 557.4 479 58.2
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.9e-156 556.6 479 58.0
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.0e-155 551.6 483 57.1
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 7.9e-155 551.2 483 57.3
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 1.0e-154 550.8 481 56.8
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.9e-154 548.9 483 56.7
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 6.7e-154 548.1 480 57.5
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 6.7e-154 548.1 480 57.5
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 1.5e-153 547.0 485 57.7
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 9.6e-153 544.3 493 59.0
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.3e-152 543.9 474 57.6
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 1.6e-152 543.5 481 56.8
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 1.1e-151 540.8 480 59.2
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 1.0e-146 524.2 488 56.6
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 4.3e-145 518.8 484 55.0
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 4.3e-145 518.8 484 55.2
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 7.4e-145 518.1 482 56.0
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 4.8e-144 515.4 482 56.0
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 3.1e-143 512.7 489 54.0
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 1.2e-142 510.8 485 56.9
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 2.6e-142 509.6 496 54.6
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.3e-141 507.3 483 54.5
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 2.9e-141 506.1 379 63.9
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 8.4e-141 504.6 481 55.3
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 5.5e-140 501.9 479 53.9
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 2.3e-138 496.5 479 55.9
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 3.9e-138 495.7 371 64.2
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 5.1e-138 495.4 490 54.3
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 1.6e-136 490.3 484 52.9
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 1.1e-135 487.6 484 52.5
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 1.1e-135 487.6 484 52.5
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 2.4e-135 486.5 483 53.0
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 4.1e-135 485.7 483 53.6
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 4.5e-134 482.3 367 63.8
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 1.4e-132 477.2 482 51.2
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 1.2e-131 474.2 405 59.0
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 1.6e-131 473.8 482 52.3
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.1e-131 473.4 486 52.1
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 8.8e-130 468.0 483 53.6
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 2.5e-129 466.5 483 50.7
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 4.3e-129 465.7 367 65.4
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 9.7e-129 464.5 487 52.2
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 2.6e-126 456.4 478 51.0
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 1.0e-125 454.5 485 52.0
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 2.5e-124 449.9 479 51.8
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 1.2e-123 447.6 478 49.6
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 1.8e-122 443.7 415 56.4
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 3.0e-122 443.0 482 49.6
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 6.7e-122 441.8 371 60.1
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 1.5e-121 440.7 479 50.5
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 3.3e-121 439.5 481 49.5
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.2e-120 436.8 484 48.3
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 1.2e-118 431.0 482 49.6
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.2e-118 431.0 482 49.2
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 1.2e-118 431.0 478 49.2
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 4.5e-118 429.1 522 46.6
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.0e-117 427.9 478 48.1
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 1.3e-117 427.6 489 49.3
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 2.2e-117 426.8 485 46.8
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.8e-117 426.0 478 48.1
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 3.8e-117 426.0 366 57.7
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 5.0e-117 425.6 483 49.1
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 6.5e-117 425.2 481 49.1
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 6.5e-117 425.2 480 49.2
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 1.4e-116 424.1 493 49.1
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 7.2e-116 421.8 478 48.1
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 9.4e-116 421.4 489 47.6
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 2.7e-115 419.9 485 46.8
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 3.3e-113 412.9 480 48.3
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 1.7e-112 410.6 483 47.0
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 2.8e-112 409.8 366 54.6
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 6.3e-112 408.7 298 65.8
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 1.8e-111 407.1 483 46.8
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 3.1e-111 406.4 365 54.8
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 9.1e-111 404.8 370 55.1
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 4.5e-110 402.5 369 55.6
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 2.7e-107 393.3 486 46.3
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.0e-106 391.3 488 45.3
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.4e-106 391.0 491 45.6
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.3e-104 384.4 424 48.8
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 1.7e-104 384.0 480 44.0
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.9e-101 373.2 515 42.3
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.7e-99 366.7 485 45.8
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 1.4e-98 364.4 492 42.1
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 3.0e-98 363.2 485 44.1
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 1.5e-97 360.9 492 43.3
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 9.8e-97 358.2 492 43.1
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 6.3e-96 355.5 492 43.1
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 1.1e-95 354.8 489 43.4
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 2.7e-94 350.1 491 43.2
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 3.3e-92 343.2 369 48.0
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.2e-91 341.3 488 43.2
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 2.1e-91 340.5 492 43.1
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 4.7e-91 339.3 375 49.3
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.4e-90 337.8 478 42.7
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 8.9e-90 335.1 423 47.0
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 6.3e-88 328.9 492 40.4
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 8.6e-85 318.5 584 35.3
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.1e-84 318.2 387 48.3
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 8.9e-82 308.5 325 51.1
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 2.0e-81 307.4 493 41.0
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 7.0e-79 298.9 277 57.0
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.0e-77 292.7 556 34.2
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 1.3e-72 278.1 387 42.6
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.4e-71 272.7 435 37.7
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.5e-68 264.6 407 36.9
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.3e-68 263.1 423 36.6
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 7.5e-65 252.3 501 33.5
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 1.2e-62 245.0 349 40.7
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.7e-62 243.8 548 31.0
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 1.4e-58 231.5 146 71.9
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 1.3e-53 214.9 265 45.7
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.3e-53 214.9 421 35.4
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 8.7e-53 212.2 288 42.7
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 8.7e-53 212.2 170 62.4
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-45 187.6 472 31.1
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 8.1e-43 179.1 177 55.9
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.4e-42 177.6 162 51.9
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.2e-41 175.3 179 49.2
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.1e-39 168.7 157 51.0
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.4e-39 166.4 157 51.6
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 1.0e-29 135.6 115 56.5
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 3.9e-29 133.7 98 64.3
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 4.3e-28 130.2 217 35.0
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.6e-25 120.9 157 40.1
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 2.5e-12 77.8 58 63.8
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 4.8e-11 73.6 55 61.8
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 2.6e-09 67.8 52 55.8
FvH4_7g33361 Fragaria vesca HOM05D006040 ORTHO05D007134 1.0e-08 65.9 56 58.9
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 3.8e-08 63.9 38 68.4


User provided reference genes

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