Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p000012 Quercus lobata HOM05D005244 ORTHO05D006539 2.4e-110 402.1 197 100.0
QL11p006533 Quercus lobata HOM05D005244 ORTHO05D006539 1.1e-75 287.0 176 83.5
QL11p005809 Quercus lobata HOM05D005244 ORTHO05D006539 7.3e-75 284.3 176 82.4
MD04G1001000 Malus domestica HOM05D005244 ORTHO05D006539 1.6e-69 266.5 220 62.7
Prupe.1G001000 Prunus persica HOM05D005244 ORTHO05D006539 2.1e-69 266.2 220 63.2
Potri.018G150600 Populus trichocarpa HOM05D005244 ORTHO05D006539 7.8e-69 264.2 226 59.3
Potri.006G080700 Populus trichocarpa HOM05D005244 ORTHO05D006539 1.3e-68 263.5 226 59.7
Dinv12631 Davidia involucrata HOM05D005244 ORTHO05D006539 3.0e-68 262.3 220 60.5
Manes.02G225500 Manihot esculenta HOM05D005244 ORTHO05D006539 1.9e-67 259.6 226 60.2
Atru.chr7.1024 Acer truncatum HOM05D005244 ORTHO05D006539 4.3e-67 258.5 226 58.8
CiPaw.07G237900 Carya illinoinensis HOM05D005244 ORTHO05D006539 7.3e-67 257.7 170 75.9
COL.COLO4_08830 Corchorus olitorius HOM05D005244 ORTHO05D006539 7.3e-67 257.7 226 59.7
Lju50C34G1 Lonicera japonica HOM05D005244 ORTHO05D006539 6.2e-66 254.6 244 57.0
CSS0037198 Camellia sinensis var. sinensis HOM05D005244 ORTHO05D006539 1.2e-64 250.4 227 59.5
SalBow5G4830 Salvia bowleyana HOM05D005244 ORTHO05D006539 1.2e-64 250.4 220 57.7
TAR383G0812 Trochodendron aralioides HOM05D005244 ORTHO05D006539 1.3e-63 246.9 220 58.2
THA.LOC104817833 Tarenaya hassleriana HOM05D005244 ORTHO05D006539 2.9e-63 245.7 220 56.8
SGA_v2.0_scaffold21G09589 Striga asiatica HOM05D005244 ORTHO05D006539 3.8e-63 245.4 220 58.6
Actinidia07539 Actinidia chinensis HOM05D005244 ORTHO05D006539 1.4e-62 243.4 221 57.9
Nitab4.5_0000807g0220 Nicotiana tabacum HOM05D005244 ORTHO05D006539 1.9e-62 243.0 220 56.8
Peaxi162Scf01347g00132 Petunia axillaris HOM05D005244 ORTHO05D006539 2.4e-62 242.7 220 57.3
Solyc07g042910.4 Solanum lycopersicum HOM05D005244 ORTHO05D006539 2.4e-62 242.7 220 55.9
Sopen07g022510 Solanum pennellii HOM05D005244 ORTHO05D006539 2.4e-62 242.7 220 55.9
MSTRG.26510 Avicennia marina HOM05D005244 ORTHO05D006539 3.2e-62 242.3 222 56.8
Haze_21246 Corylus avellana HOM05D005244 ORTHO05D006539 7.1e-62 241.1 224 59.4
Actinidia02527 Actinidia chinensis HOM05D005244 ORTHO05D006539 1.2e-61 240.4 221 56.6
CAN.G57.4 Capsicum annuum HOM05D005244 ORTHO05D006539 2.1e-61 239.6 220 55.9
DCAR_020446 Daucus carota HOM05D005244 ORTHO05D006539 2.1e-61 239.6 240 56.2
Rhsim01G0102600 Rhododendron simsii HOM05D005244 ORTHO05D006539 2.7e-61 239.2 221 56.6
Thecc.09G197300 Theobroma cacao HOM05D005244 ORTHO05D006539 2.7e-61 239.2 176 67.6
TWI34G0889 Tripterygium wilfordii HOM05D005244 ORTHO05D006539 3.5e-61 238.8 176 67.0
Gohir.D08G027300 Gossypium hirsutum HOM05D005244 ORTHO05D006539 4.6e-61 238.4 226 53.1
Nitab4.5_0000170g0280 Nicotiana tabacum HOM05D005244 ORTHO05D006539 6.0e-61 238.0 220 55.5
Cc06_g23580 Coffea canephora HOM05D005244 ORTHO05D006539 1.3e-60 236.9 217 57.1
Gohir.A08G016900 Gossypium hirsutum HOM05D005244 ORTHO05D006539 3.9e-60 235.3 226 52.7
Gorai.004G024200 Gossypium raimondii HOM05D005244 ORTHO05D006539 3.9e-60 235.3 226 52.7
ClCG03G011630 Citrullus lanatus HOM05D005244 ORTHO05D006539 6.6e-60 234.6 226 54.4
Nn8g41249 Nelumbo nucifera HOM05D005244 ORTHO05D006539 1.1e-59 233.8 174 67.2
MBI16_g40729_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 1.9e-59 233.0 234 51.3
PGR044G0827 Punica granatum HOM05D005244 ORTHO05D006539 4.3e-59 231.9 176 65.3
Ciclev10007431m.g Citrus clementina HOM05D005244 ORTHO05D006539 5.6e-59 231.5 176 64.8
Lsat_1_v5_gn_5_80020 Lactuca sativa HOM05D005244 ORTHO05D006539 5.6e-59 231.5 221 55.7
CsaV3_1G044170 Cucumis sativus L. HOM05D005244 ORTHO05D006539 9.6e-59 230.7 226 53.5
Sed0018574 Sechium edule HOM05D005244 ORTHO05D006539 1.3e-58 230.3 227 55.5
vmacro20731 Vaccinium macrocarpon HOM05D005244 ORTHO05D006539 1.3e-58 230.3 221 56.6
Migut.L01612 Erythranthe guttata HOM05D005244 ORTHO05D006539 2.8e-58 229.2 255 49.0
Sed0028124 Sechium edule HOM05D005244 ORTHO05D006539 3.6e-58 228.8 227 54.6
MELO3C010012.2 Cucumis melo HOM05D005244 ORTHO05D006539 1.4e-57 226.9 226 53.1
VMungo0464G0587 Vigna mungo HOM05D005244 ORTHO05D006539 1.4e-57 226.9 225 51.6
Eucgr.C02153 Eucalyptus grandis HOM05D005244 ORTHO05D006539 9.0e-57 224.2 176 61.9
arahy.Tifrunner.gnm1.ann1.MPB88K Arachis hypogaea HOM05D005244 ORTHO05D006539 2.0e-56 223.0 225 54.7
Glyma.01G000900 Glycine max HOM05D005244 ORTHO05D006539 4.5e-56 221.9 225 51.6
ATR0626G132 Amborella trichopoda HOM05D005244 ORTHO05D006539 7.6e-56 221.1 220 51.4
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.3e-55 220.3 218 50.0
EL10Ac2g03605 Beta vulgaris HOM05D005244 ORTHO05D006539 2.2e-55 219.5 225 50.7
arahy.Tifrunner.gnm1.ann1.GU0YFX Arachis hypogaea HOM05D005244 ORTHO05D006539 2.9e-55 219.2 225 54.2
Aqoxy7G02584 Aquilegia oxysepala HOM05D005244 ORTHO05D006539 3.8e-55 218.8 174 60.3
CDE05G2480 Ceratophyllum demersum HOM05D005244 ORTHO05D006539 6.4e-55 218.0 226 50.0
AT5G58100 Arabidopsis thaliana HOM05D005244 ORTHO05D006539 1.1e-54 217.2 220 48.6
Psat1g052040 Pisum sativum HOM05D005244 ORTHO05D006539 1.4e-54 216.9 225 52.4
RcHm_v2.0_Chr4g0393651 Rosa chinensis HOM05D005244 ORTHO05D006539 1.4e-54 216.9 224 55.4
HanXRQChr10g0309401 Helianthus annuus HOM05D005244 ORTHO05D006539 4.2e-54 215.3 223 51.6
Sc25g0001730 Simmondsia chinensis HOM05D005244 ORTHO05D006539 7.1e-54 214.5 220 52.3
AL8G34210 Arabidopsis lyrata HOM05D005244 ORTHO05D006539 1.6e-53 213.4 220 47.3
ECA234G0362 Erigeron canadensis HOM05D005244 ORTHO05D006539 1.6e-53 213.4 221 52.0
Lalb_Chr22g0361681 Lupinus albus HOM05D005244 ORTHO05D006539 2.1e-53 213.0 217 52.1
Carub.0008s1866 Capsella rubella HOM05D005244 ORTHO05D006539 2.7e-53 212.6 225 48.0
Glyma.08G360000 Glycine max HOM05D005244 ORTHO05D006539 3.5e-53 212.2 212 52.4
CANSAT80G0544 Cannabis sativa HOM05D005244 ORTHO05D006539 7.9e-53 211.1 227 52.4
Ca_25641_v3 Cicer arietinum L. HOM05D005244 ORTHO05D006539 1.0e-52 210.7 225 51.6
TPR.G18623 Trifolium pratense HOM05D005244 ORTHO05D006539 1.0e-52 210.7 225 51.6
Sed0013671 Sechium edule HOM05D005244 ORTHO05D006539 3.0e-52 209.1 221 53.8
Medtr5g019500 Medicago truncatula HOM05D005244 ORTHO05D006539 1.1e-51 207.2 225 50.2
Hund03212 Selenicereus undatus HOM05D005244 ORTHO05D006539 9.6e-51 204.1 220 51.4
PSO170G3502 Papaver somniferum HOM05D005244 ORTHO05D006539 1.6e-50 203.4 170 60.6
GSVIVG01034254001 Vitis vinifera HOM05D005244 ORTHO05D006539 2.8e-50 202.6 160 63.1
AUR62027963 Chenopodium quinoa HOM05D005244 ORTHO05D006539 3.1e-49 199.1 240 45.4
AUR62020750 Chenopodium quinoa HOM05D005244 ORTHO05D006539 6.9e-49 198.0 237 46.0
PSO063G2947 Papaver somniferum HOM05D005244 ORTHO05D006539 6.9e-49 198.0 170 58.8
Sp6g19790 Schrenkiella parvula HOM05D005244 ORTHO05D006539 4.5e-48 195.3 175 53.1
Thhalv10012595m.g Eutrema salsugineum HOM05D005244 ORTHO05D006539 5.8e-48 194.9 175 53.1
Oeu021241.1 Olea europaea HOM05D005244 ORTHO05D006539 1.1e-46 190.7 190 52.1
FvH4_4g03800 Fragaria vesca HOM05D005244 ORTHO05D006539 2.5e-46 189.5 184 57.6
FAN12G3076 Fragaria x ananassa HOM05D005244 ORTHO05D006539 2.5e-46 189.5 184 57.6
FAN12G3464 Fragaria x ananassa HOM05D005244 ORTHO05D006539 2.5e-46 189.5 184 57.6
Lj2g0016843 Lotus japonicus HOM05D005244 ORTHO05D006539 2.5e-46 189.5 225 45.8
BcaB08g36163 Brassica carinata HOM05D005244 ORTHO05D006539 2.7e-45 186.0 175 52.0
C09p50010 Brassica napus HOM05D005244 ORTHO05D006539 3.0e-44 182.6 175 50.9
BraA10t43621Z Brassica rapa HOM05D005244 ORTHO05D006539 6.7e-44 181.4 175 50.3
FAN22G0231 Fragaria x ananassa HOM05D005244 ORTHO05D006539 6.7e-44 181.4 175 57.7
BcaC04g19907 Brassica carinata HOM05D005244 ORTHO05D006539 1.5e-43 180.3 169 51.5
BolC9t57854H Brassica oleracea HOM05D005244 ORTHO05D006539 1.5e-43 180.3 169 51.5
MBI16_g00817_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 7.4e-43 177.9 185 50.3
Duzib168G0486 Durio zibethinus HOM05D005244 ORTHO05D006539 5.3e-41 171.8 223 45.3
unitig_899.g15185 Utricularia gibba HOM05D005244 ORTHO05D006539 1.2e-40 170.6 220 44.1
Zm00001eb240720 Zea mays HOM05D005244 ORTHO05D006539 7.6e-40 167.9 221 41.6
Duzib170G1117 Durio zibethinus HOM05D005244 ORTHO05D006539 1.7e-39 166.8 148 58.8
Cpa.g.sc91.76 Carica papaya HOM05D005244 ORTHO05D006539 1.9e-38 163.3 217 44.7
SMO367G0058 Selaginella moellendorffii HOM05D005244 ORTHO05D006539 3.2e-38 162.5 220 40.0
Pp3c14_21030 Physcomitrium patens HOM05D005244 ORTHO05D006539 3.5e-37 159.1 221 38.9
Os02g0469200 Oryza sativa ssp. japonica HOM05D005244 ORTHO05D006539 2.8e-34 149.4 160 48.1
Hund19348 Selenicereus undatus HOM05D005244 ORTHO05D006539 1.1e-33 147.5 164 48.8
Mapoly0125s0017 Marchantia polymorpha HOM05D005244 ORTHO05D006539 2.0e-32 143.3 169 40.8
HPP92_015784 Vanilla planifolia HOM05D005244 ORTHO05D006539 3.0e-28 129.4 171 40.9
HPP92_015795 Vanilla planifolia HOM05D005244 ORTHO05D006539 6.5e-23 111.7 137 40.1
HPP92_015814 Vanilla planifolia HOM05D005244 ORTHO05D006539 6.5e-23 111.7 137 40.1
SHI03161 Sapria himalayana HOM05D005244 ORTHO05D006539 7.2e-22 108.2 84 63.1
HPP92_015817 Vanilla planifolia HOM05D005244 ORTHO05D006539 3.9e-20 102.4 156 35.9
Zm00001eb357680 Zea mays HOM05D005244 ORTHO05D006539 3.7e-18 95.9 134 41.0
Zm00001eb016210 Zea mays HOM05D005244 ORTHO05D006539 1.1e-17 94.4 110 44.5
Zm00001eb270590 Zea mays HOM05D005244 ORTHO05D006539 1.4e-17 94.0 116 43.1
Zm00001eb175510 Zea mays HOM05D005244 ORTHO05D006539 4.1e-17 92.4 110 44.5
CBR_g983 Chara braunii HOM05D005244 ORTHO05D006539 5.9e-16 88.6 197 31.5
A10p16080 Brassica napus HOM05D005244 ORTHO05D006539 4.2e-14 82.4 57 66.7
Zm00001eb063080 Zea mays HOM05D005244 ORTHO05D006539 5.2e-12 75.5 60 58.3
CBR_g22899 Chara braunii HOM05D005244 ORTHO05D006539 3.3e-11 72.8 102 43.1
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.6e-08 63.9 53 56.6
HPP92_015815 Vanilla planifolia HOM05D005244 ORTHO05D006539 1.7e-07 60.5 76 40.8
Cre16.g680450 Chlamydomonas reinhardtii HOM05D005244 ORTHO05D006539 2.5e-06 56.6 199 26.6
MCO06G232 Micromonas commoda HOM05D005244 ORTHO05D006539 5.5e-06 55.5 181 25.4


User provided reference genes

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