Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 6.6e-152 540.8 300 100.0
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 3.5e-121 438.7 259 93.4
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.6e-118 429.9 276 85.9
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 4.8e-118 428.3 278 86.0
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 8.7e-112 407.5 262 86.3
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 3.3e-111 405.6 274 81.4
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 3.3e-111 405.6 273 82.4
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 5.7e-111 404.8 273 81.7
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 9.6e-111 404.1 277 80.1
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.6e-110 403.3 273 81.3
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 3.7e-110 402.1 277 80.1
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 8.2e-110 401.0 287 77.4
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.1e-109 400.6 273 80.6
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.1e-109 400.6 273 80.6
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.1e-109 400.6 273 81.3
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 1.4e-109 400.2 273 80.6
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.4e-109 399.4 270 80.7
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 2.4e-109 399.4 273 81.0
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 3.1e-109 399.1 273 81.0
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 5.3e-109 398.3 277 79.4
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 5.3e-109 398.3 273 80.6
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 5.3e-109 398.3 273 80.6
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 6.9e-109 397.9 273 81.0
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 2.6e-108 396.0 273 79.5
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.6e-108 396.0 273 79.5
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 2.6e-108 396.0 273 80.2
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.4e-108 395.6 273 80.2
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 4.5e-108 395.2 272 79.8
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 5.9e-108 394.8 273 79.9
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.9e-108 394.8 273 81.0
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 5.9e-108 394.8 273 81.0
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 5.9e-108 394.8 271 79.3
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 7.6e-108 394.4 273 80.2
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 7.6e-108 394.4 273 79.1
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 1.0e-107 394.0 272 79.4
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.0e-107 394.0 277 78.7
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.0e-107 394.0 273 79.9
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.3e-107 393.7 275 78.5
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 1.3e-107 393.7 279 78.1
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.7e-107 393.3 273 79.5
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 1.7e-107 393.3 273 78.8
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.7e-107 393.3 273 78.4
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.7e-107 393.3 273 80.2
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.7e-107 393.3 273 79.5
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 2.2e-107 392.9 273 79.1
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.9e-107 392.5 273 79.9
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.9e-107 392.5 273 80.6
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 2.9e-107 392.5 272 80.9
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.8e-107 392.1 273 78.8
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 3.8e-107 392.1 273 79.5
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 5.0e-107 391.7 275 78.2
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 5.0e-107 391.7 273 79.1
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 8.4e-107 391.0 272 80.5
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 1.1e-106 390.6 271 79.7
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.1e-106 390.6 272 78.7
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 2.5e-106 389.4 273 79.9
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 2.5e-106 389.4 271 79.7
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 3.2e-106 389.0 272 79.4
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 4.2e-106 388.7 272 78.7
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 4.2e-106 388.7 273 79.5
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 4.2e-106 388.7 273 79.5
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 7.2e-106 387.9 273 78.8
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.7e-105 386.0 274 77.0
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 2.7e-105 386.0 276 76.8
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 2.7e-105 386.0 276 76.8
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.7e-105 386.0 273 76.6
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 2.7e-105 386.0 273 77.3
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.7e-105 386.0 273 77.7
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 7.9e-105 384.4 272 77.6
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.8e-104 383.3 273 78.4
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 3.0e-104 382.5 271 78.6
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 3.0e-104 382.5 273 77.7
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 3.9e-104 382.1 274 78.1
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 8.7e-104 380.9 273 78.4
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.5e-103 380.2 272 77.2
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.5e-103 380.2 297 73.4
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.9e-103 379.8 272 75.7
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.9e-103 379.8 261 80.5
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.3e-103 379.0 261 80.5
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 4.3e-103 378.6 273 77.3
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 4.3e-103 378.6 261 82.0
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 7.4e-103 377.9 278 75.9
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.8e-102 375.9 248 85.1
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.8e-102 375.9 248 85.1
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.7e-102 375.6 274 78.5
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 1.8e-101 373.2 317 68.5
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 2.4e-101 372.9 270 78.1
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 6.9e-101 371.3 271 76.0
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 4.5e-100 368.6 272 76.1
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.7e-100 367.9 316 68.7
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 3.2e-98 362.5 316 67.1
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 9.4e-98 360.9 273 70.7
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 6.1e-97 358.2 254 78.3
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.0e-96 357.5 269 71.4
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 5.1e-96 355.1 254 78.7
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 6.7e-96 354.8 273 72.5
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.1e-95 354.0 262 76.0
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.5e-95 353.6 296 65.5
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 3.3e-95 352.4 318 61.6
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 7.4e-95 351.3 275 67.6
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 9.7e-95 350.9 274 73.0
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 9.7e-95 350.9 271 71.6
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.7e-94 350.1 271 69.7
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.8e-93 346.7 270 72.2
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 9.1e-93 344.4 260 76.2
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 3.4e-92 342.4 272 74.6
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.4e-90 337.0 345 56.8
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 2.7e-89 332.8 327 64.5
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.4e-88 330.5 225 82.2
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 2.3e-88 329.7 230 80.9
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 6.7e-88 328.2 273 71.1
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.4e-87 324.7 273 70.7
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.2e-84 317.4 273 60.4
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 2.6e-84 316.2 264 67.0
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 3.2e-82 309.3 222 79.3
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.2e-81 307.4 282 63.5
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.0e-80 304.3 273 61.9
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 2.3e-80 303.1 284 61.6
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 3.0e-80 302.8 222 76.6
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 5.2e-80 302.0 224 79.5
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 4.2e-74 282.3 185 85.4
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.6e-73 279.3 309 57.6
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 2.3e-64 250.0 254 57.1
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 1.2e-63 247.7 179 83.2
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 3.7e-62 242.7 290 47.9
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 6.1e-57 225.3 280 49.6
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 1.6e-52 210.7 156 68.6
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 8.6e-51 204.9 145 82.1
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 7.3e-50 201.8 134 76.9
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 2.1e-49 200.3 106 94.3
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 4.4e-47 192.6 128 77.3
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.4e-45 187.6 299 44.8
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.7e-43 180.6 129 72.1
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 2.2e-38 163.7 93 88.2
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 1.9e-37 160.6 90 90.0
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 2.0e-31 140.6 81 86.4
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.4e-29 134.4 151 56.3
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 6.6e-27 125.6 81 75.3
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 3.6e-25 119.8 76 76.3
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.7e-25 119.4 70 84.3
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 4.7e-25 119.4 70 84.3
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 4.6e-20 102.8 58 82.8
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.0e-19 101.7 157 43.3
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.0e-19 101.7 150 40.7
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 1.0e-19 101.7 263 33.8
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 3.9e-19 99.8 102 56.9
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-17 94.0 72 84.7
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 2.1e-17 94.0 158 43.0
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 6.2e-17 92.4 153 39.9
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.4e-16 90.5 157 40.1
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.3e-16 89.4 73 76.7
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.3e-14 84.7 154 36.4
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 1.3e-14 84.7 86 61.6
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 3.8e-14 83.2 152 36.8
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 1.4e-13 81.3 43 90.7
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 9.3e-13 78.6 45 86.7
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.6e-12 77.8 44 84.1
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 1.8e-11 74.3 84 50.0
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.0e-11 73.6 156 37.8
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.9e-11 73.2 168 33.9
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 6.2e-09 65.9 266 29.7
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.4e-08 64.7 140 41.4
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 6.4e-06 55.8 38 71.1


User provided reference genes

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