Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 1.6e-141 506.1 264 100.0
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 1.6e-109 399.8 250 84.8
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 2.6e-107 392.5 260 78.5
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 2.2e-106 389.4 273 75.1
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 2.2e-106 389.4 273 75.1
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 7.5e-91 337.8 261 72.8
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 3.7e-90 335.5 254 74.4
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 2.4e-89 332.8 253 70.8
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 7.7e-88 327.8 254 70.9
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 2.2e-87 326.2 252 70.6
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 1.0e-84 317.4 263 68.1
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 1.0e-84 317.4 249 70.7
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 5.2e-84 315.1 251 68.5
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 5.7e-83 311.6 263 67.7
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 3.7e-82 308.9 256 67.6
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 3.7e-82 308.9 256 68.0
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 6.3e-82 308.1 256 68.0
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 8.3e-82 307.8 251 67.7
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 1.1e-81 307.4 250 69.2
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 7.0e-81 304.7 254 67.7
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 7.0e-81 304.7 256 67.2
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.6e-80 303.5 256 66.0
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 2.7e-80 302.8 253 67.2
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 5.9e-80 301.6 253 66.4
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 5.9e-80 301.6 253 66.4
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 5.9e-80 301.6 257 66.1
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.7e-79 300.1 252 66.3
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 1.7e-79 300.1 252 67.1
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 2.9e-79 299.3 255 65.5
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 2.9e-79 299.3 253 66.4
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 5.0e-79 298.5 254 65.4
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 5.0e-79 298.5 251 65.3
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 6.6e-79 298.1 253 64.8
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 3.3e-78 295.8 260 64.6
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 5.6e-78 295.0 249 65.5
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 7.3e-78 294.7 256 63.7
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 2.8e-77 292.7 263 63.1
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 6.1e-77 291.6 251 65.3
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 4.0e-76 288.9 261 64.4
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 4.0e-76 288.9 251 64.5
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 8.9e-76 287.7 261 64.8
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 1.2e-75 287.3 254 65.0
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 2.0e-75 286.6 254 63.4
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 4.4e-75 285.4 275 61.8
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 1.7e-74 283.5 254 62.6
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 3.7e-74 282.3 236 65.3
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 6.4e-74 281.6 211 69.2
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 2.4e-73 279.6 255 62.7
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 2.4e-73 279.6 200 70.5
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 3.2e-73 279.3 195 73.8
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 3.2e-73 279.3 246 63.4
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 4.1e-73 278.9 247 63.6
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 5.4e-73 278.5 252 63.1
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 5.4e-73 278.5 252 63.1
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 5.4e-73 278.5 255 62.4
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 7.0e-73 278.1 252 62.7
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 7.0e-73 278.1 257 61.5
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 7.0e-73 278.1 216 66.7
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 7.0e-73 278.1 257 63.4
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 9.2e-73 277.7 240 64.2
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 2.0e-72 276.6 254 62.2
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 2.0e-72 276.6 254 62.2
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 2.0e-72 276.6 217 67.3
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 2.7e-72 276.2 257 63.0
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 2.3e-71 273.1 266 60.9
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 3.0e-71 272.7 189 74.1
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 3.0e-71 272.7 270 58.9
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 6.6e-71 271.6 245 60.4
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 1.5e-70 270.4 264 59.8
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 4.3e-70 268.9 251 62.5
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 1.2e-69 267.3 229 64.2
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 1.2e-69 267.3 236 58.9
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 1.6e-69 266.9 258 58.9
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.0e-68 264.2 261 57.9
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 1.0e-68 264.2 256 60.5
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 1.8e-68 263.5 219 61.2
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 3.1e-68 262.7 235 61.3
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 2.6e-67 259.6 193 69.9
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 7.5e-67 258.1 252 57.5
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 9.8e-67 257.7 248 60.1
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 8.3e-66 254.6 243 60.5
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 1.6e-64 250.4 208 64.4
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 1.7e-63 246.9 238 57.6
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 2.3e-63 246.5 191 66.0
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 2.3e-63 246.5 200 65.0
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 5.0e-63 245.4 281 55.2
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 6.6e-63 245.0 257 56.8
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 6.6e-63 245.0 250 56.4
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 1.1e-62 244.2 235 58.7
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 3.3e-62 242.7 192 64.6
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 4.3e-62 242.3 225 60.0
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 7.3e-62 241.5 254 55.9
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 9.5e-62 241.1 268 56.0
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 1.2e-61 240.7 200 63.0
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 2.1e-61 240.0 257 56.0
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 4.7e-61 238.8 259 54.4
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 6.2e-61 238.4 259 54.4
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 1.4e-60 237.3 255 56.1
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 3.1e-60 236.1 259 54.8
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 4.0e-60 235.7 157 78.3
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 6.8e-60 235.0 246 56.5
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 1.2e-59 234.2 229 59.4
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 1.2e-59 234.2 173 67.6
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 4.4e-59 232.3 258 53.9
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 9.8e-59 231.1 178 62.4
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 4.1e-57 225.7 192 62.5
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 4.3e-54 215.7 141 78.7
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 2.2e-50 203.4 200 53.5
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 3.7e-50 202.6 264 48.9
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 5.4e-49 198.7 174 55.7
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 1.4e-41 174.1 182 54.9
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 8.1e-29 131.7 98 68.4
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 6.0e-24 115.5 95 63.2
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 1.6e-21 107.5 127 53.5
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 2.2e-18 97.1 70 67.1
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-16 90.5 92 42.4
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 7.9e-16 88.6 164 39.0
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 7.4e-14 82.0 71 56.3
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 1.9e-09 67.4 41 78.0
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.9e-06 57.4 55 54.5


User provided reference genes

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