Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g211080 Pisum sativum HOM05D002008 ORTHO05D025651 2.1e-55 218.8 110 100.0
Psat0s3396g0280 Pisum sativum HOM05D002008 ORTHO05D025651 4.1e-43 177.9 117 82.9
Psat7g215360 Pisum sativum HOM05D002008 ORTHO05D002054 1.6e-31 139.4 90 85.6
TPR.G23620 Trifolium pratense HOM05D002008 ORTHO05D002054 6.0e-18 94.4 100 57.0
Medtr4g064260 Medicago truncatula HOM05D002008 ORTHO05D002054 3.0e-17 92.0 100 61.0
TPR.G40252 Trifolium pratense HOM05D002008 ORTHO05D025651 5.1e-17 91.3 100 56.0
Medtr4g064300 Medicago truncatula HOM05D002008 ORTHO05D002054 4.4e-13 78.2 97 52.6
Glyma.11G137900 Glycine max HOM05D002008 ORTHO05D002054 1.3e-12 76.6 112 44.6
Medtr4g064330 Medicago truncatula HOM05D002008 ORTHO05D002054 1.3e-12 76.6 97 50.5
Ca_19155_v3 Cicer arietinum L. HOM05D002008 ORTHO05D002054 2.2e-12 75.9 101 50.5
Glyma.12G061700 Glycine max HOM05D002008 ORTHO05D002054 1.1e-11 73.6 113 45.1
Haze_24127 Corylus avellana HOM05D002008 ORTHO05D002054 1.4e-11 73.2 108 47.2
MD03G1088700 Malus domestica HOM05D002008 ORTHO05D002054 1.4e-11 73.2 113 48.7
Lj3g0026091 Lotus japonicus HOM05D002008 ORTHO05D002054 3.2e-11 72.0 98 50.0
Phvul.004G107800 Phaseolus vulgaris HOM05D002008 ORTHO05D002054 4.2e-11 71.6 105 45.7
MD11G1097700 Malus domestica HOM05D002008 ORTHO05D002054 9.3e-11 70.5 113 46.0
Potri.001G242200 Populus trichocarpa HOM05D002008 ORTHO05D002054 1.2e-10 70.1 106 48.1
QL01p031091 Quercus lobata HOM05D002008 ORTHO05D002054 1.2e-10 70.1 107 46.7
MD02G1066100 Malus domestica HOM05D002008 ORTHO05D002054 2.7e-10 68.9 114 46.5
RcHm_v2.0_Chr5g0065821 Rosa chinensis HOM05D002008 ORTHO05D002054 3.5e-10 68.6 113 46.0
Sabra16G0146900 Salix brachista HOM05D002008 ORTHO05D002054 3.5e-10 68.6 106 47.2
CiPaw.13G091700 Carya illinoinensis HOM05D002008 ORTHO05D002054 4.6e-10 68.2 108 47.2
Lj6g0000226 Lotus japonicus HOM05D002008 ORTHO05D002054 2.3e-09 65.9 94 47.9
arahy.Tifrunner.gnm1.ann1.FM8KFZ Arachis hypogaea HOM05D002008 ORTHO05D002054 3.9e-09 65.1 104 42.3
CDE04G2809 Ceratophyllum demersum HOM05D002008 ORTHO05D002054 8.7e-09 63.9 112 41.1
Duzib150G1662 Durio zibethinus HOM05D002008 ORTHO05D002054 8.7e-09 63.9 108 46.3
arahy.Tifrunner.gnm1.ann1.F1N93U Arachis hypogaea HOM05D002008 ORTHO05D002054 1.1e-08 63.5 112 42.9
Glyma.15G036700 Glycine max HOM05D002008 ORTHO05D002054 1.5e-08 63.2 107 45.8
FvH4_3g36770 Fragaria vesca HOM05D002008 ORTHO05D002054 1.9e-08 62.8 125 40.8
FAN11G3824 Fragaria x ananassa HOM05D002008 ORTHO05D002054 1.9e-08 62.8 125 40.8
FAN25G2550 Fragaria x ananassa HOM05D002008 ORTHO05D002054 2.5e-08 62.4 125 40.8
Gohir.A03G043900 Gossypium hirsutum HOM05D002008 ORTHO05D002054 2.5e-08 62.4 106 41.5
Lalb_Chr03g0026521 Lupinus albus HOM05D002008 ORTHO05D002054 2.5e-08 62.4 107 42.1
MD15G1196800 Malus domestica HOM05D002008 ORTHO05D002054 2.5e-08 62.4 114 44.7
Prupe.6G073100 Prunus persica HOM05D002008 ORTHO05D002054 2.5e-08 62.4 114 44.7
arahy.Tifrunner.gnm1.ann1.RF5AXZ Arachis hypogaea HOM05D002008 ORTHO05D002054 3.3e-08 62.0 107 40.2
Psat7g215280 Pisum sativum HOM05D040696 ORTHO05D320880 3.3e-08 62.0 46 78.3
Hund18895 Selenicereus undatus HOM05D002008 ORTHO05D002054 4.3e-08 61.6 101 44.6
FAN16G0991 Fragaria x ananassa HOM05D002008 ORTHO05D002054 5.6e-08 61.2 125 40.0
Thecc.09G318800 Theobroma cacao HOM05D002008 ORTHO05D002054 5.6e-08 61.2 108 43.5
THA.LOC104800675 Tarenaya hassleriana HOM05D002008 ORTHO05D002054 7.3e-08 60.8 109 42.2
unitig_744.g24264 Utricularia gibba HOM05D002008 ORTHO05D002054 7.3e-08 60.8 128 35.9
Zm00001eb206740 Zea mays HOM05D002008 ORTHO05D002054 9.6e-08 60.5 102 42.2
Ciclev10028767m.g Citrus clementina HOM05D002008 ORTHO05D002054 1.3e-07 60.1 108 40.7
Glyma.08G045500 Glycine max HOM05D002008 ORTHO05D002054 1.3e-07 60.1 103 41.7
Hma1.2p1_0757F.1_g213250 Hydrangea macrophylla HOM05D002008 ORTHO05D002054 1.3e-07 60.1 103 40.8
Hma1.2p1_1861F.1_g305680 Hydrangea macrophylla HOM05D002008 ORTHO05D002054 1.3e-07 60.1 103 40.8
Cpa.g.sc81.120 Carica papaya HOM05D002008 ORTHO05D002054 1.6e-07 59.7 106 43.4
COL.COLO4_18545 Corchorus olitorius HOM05D002008 ORTHO05D002054 1.6e-07 59.7 109 44.0
AL4G23640 Arabidopsis lyrata HOM05D002008 ORTHO05D002054 2.8e-07 58.9 106 42.5
A04p22080 Brassica napus HOM05D002008 ORTHO05D002054 2.8e-07 58.9 100 44.0
BraA04t17772Z Brassica rapa HOM05D002008 ORTHO05D002054 2.8e-07 58.9 100 44.0
Carub.0004s1007 Capsella rubella HOM05D002008 ORTHO05D002054 2.8e-07 58.9 105 45.7
C04p58180 Brassica napus HOM05D002008 ORTHO05D002054 3.6e-07 58.5 97 43.3
BolC4t27346H Brassica oleracea HOM05D002008 ORTHO05D002054 3.6e-07 58.5 97 43.3
CSS0013045 Camellia sinensis var. sinensis HOM05D002008 ORTHO05D002054 3.6e-07 58.5 90 44.4
Hma1.2p1_0321F.1_g124270 Hydrangea macrophylla HOM05D002008 ORTHO05D002054 3.6e-07 58.5 108 40.7
Phvul.002G320900 Phaseolus vulgaris HOM05D002008 ORTHO05D002054 3.6e-07 58.5 107 38.3
Psat7g008080 Pisum sativum HOM05D002008 ORTHO05D002054 3.6e-07 58.5 108 39.8
Potri.009G124900 Populus trichocarpa HOM05D002008 ORTHO05D002054 3.6e-07 58.5 111 40.5
arahy.Tifrunner.gnm1.ann1.3X6UQX Arachis hypogaea HOM05D002008 ORTHO05D002054 4.8e-07 58.2 111 39.6
arahy.Tifrunner.gnm1.ann1.MT58QN Arachis hypogaea HOM05D002008 ORTHO05D002054 4.8e-07 58.2 105 40.0
arahy.Tifrunner.gnm1.ann1.P0LCTU Arachis hypogaea HOM05D002008 ORTHO05D002054 4.8e-07 58.2 105 40.0
arahy.Tifrunner.gnm1.ann1.VXUC2C Arachis hypogaea HOM05D002008 ORTHO05D002054 4.8e-07 58.2 111 39.6
THA.LOC104804111 Tarenaya hassleriana HOM05D002008 ORTHO05D002054 4.8e-07 58.2 101 42.6
TAR633G0191 Trochodendron aralioides HOM05D002008 ORTHO05D002054 4.8e-07 58.2 112 42.0
CDE06G0219 Ceratophyllum demersum HOM05D002008 ORTHO05D002054 6.2e-07 57.8 112 38.4
Prupe.7G219200 Prunus persica HOM05D002008 ORTHO05D002054 6.2e-07 57.8 117 41.9
Aqoxy1G00118 Aquilegia oxysepala HOM05D002008 ORTHO05D002054 8.1e-07 57.4 110 42.7
CARHR122350 Cardamine hirsuta HOM05D002008 ORTHO05D002054 8.1e-07 57.4 109 41.3
Dinv06260 Davidia involucrata HOM05D002008 ORTHO05D002054 8.1e-07 57.4 109 42.2
ECA248G2352 Erigeron canadensis HOM05D002008 ORTHO05D002054 8.1e-07 57.4 102 42.2
Nn2g13388 Nelumbo nucifera HOM05D002008 ORTHO05D002054 8.1e-07 57.4 104 44.2
Aqoxy5G01476 Aquilegia oxysepala HOM05D002008 ORTHO05D002054 1.1e-06 57.0 110 41.8
AT2G29070 Arabidopsis thaliana HOM05D002008 ORTHO05D002054 1.1e-06 57.0 105 40.0
DCAR_028945 Daucus carota HOM05D002008 ORTHO05D002054 1.1e-06 57.0 108 37.0
Glyma.05G238500 Glycine max HOM05D002008 ORTHO05D002054 1.1e-06 57.0 103 39.8
Sp4g00460 Schrenkiella parvula HOM05D002008 ORTHO05D002054 1.4e-06 56.6 118 41.5
VMungo0251G1513 Vigna mungo HOM05D002008 ORTHO05D002054 1.4e-06 56.6 106 37.7
Aa31LG7G15220 Aethionema arabicum HOM05D002008 ORTHO05D002054 1.8e-06 56.2 108 37.0
Thhalv10016960m.g Eutrema salsugineum HOM05D002008 ORTHO05D002054 1.8e-06 56.2 107 41.1
Glyma.13G201600 Glycine max HOM05D002008 ORTHO05D025651 1.8e-06 56.2 92 41.3
TPR.G13132 Trifolium pratense HOM05D002008 ORTHO05D002054 1.8e-06 56.2 108 43.5
Cc01_g13100 Coffea canephora HOM05D002008 ORTHO05D002054 2.4e-06 55.8 103 41.7
ECA233G2134 Erigeron canadensis HOM05D002008 ORTHO05D002054 2.4e-06 55.8 108 41.7
Migut.D02074 Erythranthe guttata HOM05D002008 ORTHO05D002054 2.4e-06 55.8 86 41.9
Sp7g36910 Schrenkiella parvula HOM05D002008 ORTHO05D002054 2.4e-06 55.8 104 39.4
TAR628G0127 Trochodendron aralioides HOM05D002008 ORTHO05D002054 2.4e-06 55.8 109 40.4
Actinidia20472 Actinidia chinensis HOM05D002948 ORTHO05D003577 3.1e-06 55.5 106 40.6
Lsat_1_v5_gn_5_169381 Lactuca sativa HOM05D002008 ORTHO05D002054 3.1e-06 55.5 93 44.1
Peaxi162Scf00016g00033 Petunia axillaris HOM05D002008 ORTHO05D002054 3.1e-06 55.5 104 40.4
Sabra09G0095900 Salix brachista HOM05D002008 ORTHO05D002054 3.1e-06 55.5 110 40.0
SGA_v2.0_scaffold32G13222 Striga asiatica HOM05D000722 ORTHO05D002054 3.1e-06 55.5 105 41.0
CARHR112140 Cardamine hirsuta HOM05D002008 ORTHO05D002054 4.0e-06 55.1 109 41.3
Thhalv10000246m.g Eutrema salsugineum HOM05D002008 ORTHO05D002054 4.0e-06 55.1 111 36.9
Lj9A383G60 Lonicera japonica HOM05D002008 ORTHO05D002054 4.0e-06 55.1 105 39.0
Cc02_g16870 Coffea canephora HOM05D002008 ORTHO05D002054 5.3e-06 54.7 106 37.7
SGA_v2.0_scaffold58G20460 Striga asiatica HOM05D002008 ORTHO05D002054 5.3e-06 54.7 112 37.5
Dinv41998 Davidia involucrata HOM05D002008 ORTHO05D002054 6.9e-06 54.3 108 38.0
Potri.004G163200 Populus trichocarpa HOM05D002008 ORTHO05D002054 6.9e-06 54.3 108 38.0
HPP92_010602 Vanilla planifolia HOM05D002008 ORTHO05D002054 6.9e-06 54.3 103 39.8
CAN.G170.102 Capsicum annuum HOM05D002008 ORTHO05D002054 9.0e-06 53.9 108 40.7
Ca_17258_v3 Cicer arietinum L. HOM05D002008 ORTHO05D002054 9.0e-06 53.9 110 39.1
Ca_17280_v3 Cicer arietinum L. HOM05D002008 ORTHO05D002054 9.0e-06 53.9 110 39.1
Lalb_Chr16g0387551 Lupinus albus HOM05D002008 ORTHO05D002054 9.0e-06 53.9 106 36.8
Medtr8g105250 Medicago truncatula HOM05D002008 ORTHO05D002054 9.0e-06 53.9 107 38.3
Solyc01g110410.3 Solanum lycopersicum HOM05D002008 ORTHO05D002054 9.0e-06 53.9 109 39.4
Sopen01g052560 Solanum pennellii HOM05D002008 ORTHO05D002054 9.0e-06 53.9 109 39.4


User provided reference genes

Program Settings