Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 0.0e+00 1251.5 862 100.0
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 2.6e-249 865.9 949 71.0
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 3.5e-238 828.9 949 70.7
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 1.1e-204 717.6 929 52.9
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 2.0e-185 653.7 951 55.9
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 1.0e-176 624.8 931 51.7
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 1.0e-168 598.2 956 56.4
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 3.2e-167 593.2 950 56.3
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 1.5e-161 574.3 961 55.7
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 2.0e-153 547.4 957 57.3
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 9.7e-148 528.5 978 55.7
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 4.1e-138 496.5 980 53.7
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 4.1e-138 496.5 993 54.9
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 9.1e-138 495.4 929 55.2
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 2.0e-92 344.7 988 43.2
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 4.0e-85 320.5 942 45.4
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 1.7e-83 315.1 965 43.6
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.2e-83 314.7 948 46.7
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 6.4e-83 313.2 991 42.3
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 4.6e-81 307.0 300 62.0
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 7.9e-81 306.2 960 45.1
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.9e-79 301.6 307 59.9
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 7.4e-79 299.7 967 42.4
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 5.3e-77 293.5 263 65.0
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 2.0e-76 291.6 945 44.0
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 5.8e-76 290.0 255 64.7
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 2.4e-74 284.6 869 46.8
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 3.2e-74 284.3 864 40.3
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.2e-73 282.3 237 67.5
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 1.8e-72 278.5 945 42.3
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 5.1e-72 276.9 962 43.6
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 8.7e-72 276.2 922 44.7
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.9e-71 275.0 937 45.9
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 5.6e-71 273.5 1025 42.4
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 9.6e-71 272.7 981 42.5
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 9.6e-71 272.7 984 43.0
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 4.8e-70 270.4 244 63.5
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 4.8e-70 270.4 264 61.0
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 8.2e-70 269.6 878 44.5
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 8.2e-70 269.6 878 44.5
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.1e-69 267.7 950 43.3
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 3.1e-69 267.7 947 41.2
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.2e-68 265.8 291 59.8
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.2e-68 265.8 278 56.8
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.0e-68 265.0 950 40.7
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 3.4e-68 264.2 277 58.8
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 5.8e-68 263.5 317 53.0
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 5.8e-68 263.5 172 79.1
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 5.8e-68 263.5 237 61.6
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 3.8e-67 260.8 293 55.6
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 1.4e-66 258.8 883 44.8
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 3.2e-66 257.7 311 56.6
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 4.2e-66 257.3 305 56.1
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 5.5e-66 256.9 974 44.8
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 7.1e-66 256.5 992 43.3
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 1.6e-65 255.4 280 59.3
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 2.7e-65 254.6 274 60.9
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 4.6e-65 253.8 903 44.5
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 4.6e-65 253.8 205 67.8
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 6.0e-65 253.4 941 44.0
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 5.1e-64 250.4 210 65.2
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 1.1e-63 249.2 286 57.0
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 4.3e-63 247.3 282 59.2
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 1.3e-62 245.7 257 57.2
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 1.6e-62 245.4 287 58.2
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 2.2e-62 245.0 320 52.5
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 2.2e-62 245.0 319 54.2
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 2.2e-62 245.0 302 56.0
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 2.8e-62 244.6 261 55.6
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.8e-62 244.6 941 45.1
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 4.8e-62 243.8 243 61.3
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 8.2e-62 243.0 161 76.4
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 3.1e-61 241.1 958 39.8
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 6.9e-61 240.0 994 38.4
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 2.6e-60 238.0 150 80.0
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 1.0e-59 236.1 217 60.8
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 2.2e-59 235.0 317 51.7
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 1.1e-58 232.6 960 40.9
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.9e-58 231.9 258 57.0
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 3.2e-58 231.1 852 47.5
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 9.4e-58 229.6 144 79.2
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 2.1e-57 228.4 891 43.0
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 3.6e-57 227.6 318 50.9
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 6.1e-57 226.9 975 41.0
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 7.9e-57 226.5 135 83.7
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 1.0e-56 226.1 948 41.5
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 1.0e-56 226.1 299 55.9
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 3.0e-56 224.6 311 52.7
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 3.9e-56 224.2 946 45.7
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 3.9e-56 224.2 206 61.2
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 6.7e-56 223.4 134 82.1
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 8.8e-56 223.0 263 51.7
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 8.8e-56 223.0 263 51.7
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 3.3e-55 221.1 936 42.9
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.3e-55 221.1 299 48.2
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 7.4e-55 219.9 275 51.3
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 1.3e-54 219.2 294 48.6
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 1.3e-54 219.2 993 39.5
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 4.8e-54 217.2 312 48.7
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 8.2e-54 216.5 309 52.8
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.4e-53 215.7 1002 33.7
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 9.1e-53 213.0 967 41.8
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 1.2e-52 212.6 954 42.5
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 4.5e-52 210.7 859 44.8
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 4.5e-52 210.7 989 40.2
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 2.2e-51 208.4 129 77.5
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 3.8e-51 207.6 918 38.7
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 4.2e-50 204.1 173 60.7
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.7e-49 201.4 113 87.6
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 6.1e-49 200.3 969 37.3
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 7.9e-49 199.9 267 51.3
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 1.4e-48 199.1 221 52.5
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 3.0e-48 198.0 134 73.9
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 1.1e-42 179.5 161 57.8
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 1.9e-42 178.7 959 39.4
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 1.7e-38 165.6 204 49.5
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 3.6e-33 147.9 124 62.1
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 1.5e-31 142.5 134 60.4
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 2.2e-27 128.6 182 44.5
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 2.2e-27 128.6 127 54.3
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 1.2e-23 116.3 742 42.6
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 2.8e-22 111.7 156 43.6
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 3.5e-20 104.8 145 43.4
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 1.3e-19 102.8 126 50.8
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.5e-18 99.4 86 62.8
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 4.4e-15 87.8 62 69.4
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 7.3e-10 70.5 50 72.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 8.9e-08 63.5 121 33.9


User provided reference genes

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