Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g210040 Pisum sativum HOM05D002989 ORTHO05D003218 1.1e-59 233.0 107 100.0
Medtr1g071370 Medicago truncatula HOM05D002989 ORTHO05D003218 3.0e-22 108.6 114 53.5
TPR.G25700 Trifolium pratense HOM05D002989 ORTHO05D003218 6.7e-22 107.5 114 52.6
Phvul.007G174700 Phaseolus vulgaris HOM05D002989 ORTHO05D003218 4.8e-20 101.3 114 50.0
Ca_09731_v3 Cicer arietinum L. HOM05D002989 ORTHO05D003218 8.1e-20 100.5 89 58.4
Glyma.02G144500 Glycine max HOM05D002989 ORTHO05D003218 1.1e-19 100.1 114 50.9
VMungo0720G0840 Vigna mungo HOM05D002989 ORTHO05D003218 5.3e-19 97.8 114 48.2
arahy.Tifrunner.gnm1.ann1.T1HKRS Arachis hypogaea HOM05D002989 ORTHO05D003218 1.2e-18 96.7 114 48.2
arahy.Tifrunner.gnm1.ann1.V0L3RT Arachis hypogaea HOM05D002989 ORTHO05D003218 1.2e-18 96.7 114 48.2
Lj5g0006345 Lotus japonicus HOM05D002989 ORTHO05D003218 1.7e-17 92.8 113 47.8
CSS0014533 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 1.9e-16 89.4 108 44.4
Atru.chr5.1517 Acer truncatum HOM05D002989 ORTHO05D003218 5.5e-16 87.8 114 46.5
MELO3C014325.2 Cucumis melo HOM05D002989 ORTHO05D003218 5.5e-16 87.8 114 43.9
CsaV3_2G013890 Cucumis sativus L. HOM05D002989 ORTHO05D003218 5.5e-16 87.8 114 43.9
Dinv32887 Davidia involucrata HOM05D002989 ORTHO05D003218 5.5e-16 87.8 115 44.3
ClCG07G000490 Citrullus lanatus HOM05D002989 ORTHO05D003218 7.1e-16 87.4 114 43.9
TAR365G0266 Trochodendron aralioides HOM05D002989 ORTHO05D003218 7.1e-16 87.4 96 47.9
TAR365G0943 Trochodendron aralioides HOM05D002989 ORTHO05D003218 7.1e-16 87.4 115 43.5
Actinidia24922 Actinidia chinensis HOM05D001150 ORTHO05D003218 1.2e-15 86.7 115 41.7
Ciclev10018605m.g Citrus clementina HOM05D002989 ORTHO05D003218 1.2e-15 86.7 115 47.0
Lalb_Chr21g0306351 Lupinus albus HOM05D002989 ORTHO05D003218 1.2e-15 86.7 115 44.3
GSVIVG01003117001 Vitis vinifera HOM05D002989 ORTHO05D003218 1.6e-15 86.3 118 41.5
PSO832G1612 Papaver somniferum HOM05D002989 ORTHO05D003218 2.1e-15 85.9 114 42.1
Sabra05G0164000 Salix brachista HOM05D002989 ORTHO05D003218 2.7e-15 85.5 116 43.1
FvH4_2g23010 Fragaria vesca HOM05D002989 ORTHO05D003218 3.5e-15 85.1 89 52.8
HanXRQChr10g0281961 Helianthus annuus HOM05D002989 ORTHO05D003218 3.5e-15 85.1 115 44.3
FAN24G2837 Fragaria x ananassa HOM05D002989 ORTHO05D003218 4.6e-15 84.7 115 42.6
Sed0003144 Sechium edule HOM05D002989 ORTHO05D003218 4.6e-15 84.7 112 43.8
Gohir.D08G055500 Gossypium hirsutum HOM05D002989 ORTHO05D003218 6.0e-15 84.3 114 44.7
RcHm_v2.0_Chr6g0290051 Rosa chinensis HOM05D002989 ORTHO05D003218 6.0e-15 84.3 89 51.7
CANSAT25G2944 Cannabis sativa HOM05D002989 ORTHO05D003218 7.9e-15 84.0 115 42.6
Duzib211G0299 Durio zibethinus HOM05D002989 ORTHO05D003218 1.0e-14 83.6 114 45.6
PGR019G0005 Punica granatum HOM05D002989 ORTHO05D003218 1.0e-14 83.6 113 42.5
PGR044G1058 Punica granatum HOM05D002989 ORTHO05D003218 1.0e-14 83.6 113 42.5
PGR044G2467 Punica granatum HOM05D002989 ORTHO05D003218 1.0e-14 83.6 113 42.5
TAR362G0937 Trochodendron aralioides HOM05D002989 ORTHO05D003218 1.0e-14 83.6 114 42.1
vmacro14890 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 1.0e-14 83.6 114 43.9
Gorai.004G056100 Gossypium raimondii HOM05D002989 ORTHO05D003218 1.3e-14 83.2 114 43.9
ECA247G3236 Erigeron canadensis HOM05D002989 ORTHO05D003218 1.8e-14 82.8 115 44.3
FAN15G0470 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.8e-14 82.8 115 41.7
FAN27G2040 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.8e-14 82.8 115 41.7
MBI11_g09455_MAGBIO Magnolia biondii HOM05D002989 ORTHO05D003218 1.8e-14 82.8 115 42.6
Prupe.8G235000 Prunus persica HOM05D002989 ORTHO05D003218 2.3e-14 82.4 114 43.9
FAN20G1777 Fragaria x ananassa HOM05D002989 ORTHO05D003218 3.9e-14 81.6 115 40.9
Lj2C1165G7 Lonicera japonica HOM05D002989 ORTHO05D003218 3.9e-14 81.6 120 43.3
Manes.05G081600 Manihot esculenta HOM05D002989 ORTHO05D003218 6.7e-14 80.9 115 42.6
Rhsim01G0272200 Rhododendron simsii HOM05D002989 ORTHO05D003218 6.7e-14 80.9 114 41.2
MD03G1258500 Malus domestica HOM05D002989 ORTHO05D003218 8.7e-14 80.5 115 42.6
Thecc.01G272000 Theobroma cacao HOM05D002989 ORTHO05D003218 8.7e-14 80.5 114 43.0
Haze_04646 Corylus avellana HOM05D002989 ORTHO05D003218 1.1e-13 80.1 116 44.0
Gohir.A08G045205 Gossypium hirsutum HOM05D002989 ORTHO05D003218 1.1e-13 80.1 114 43.0
TWI12G0259 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 1.1e-13 80.1 114 43.9
CiPaw.08G108900 Carya illinoinensis HOM05D002989 ORTHO05D003218 1.9e-13 79.3 115 44.3
Potri.005G214650 Populus trichocarpa HOM05D002989 ORTHO05D003218 1.9e-13 79.3 115 40.0
Cpa.g.sc52.114 Carica papaya HOM05D002989 ORTHO05D003218 2.5e-13 79.0 113 42.5
Lsat_1_v5_gn_9_7521 Lactuca sativa HOM05D002989 ORTHO05D003218 2.5e-13 79.0 107 42.1
QL12p042063 Quercus lobata HOM05D002989 ORTHO05D003218 3.3e-13 78.6 115 42.6
HanXRQChr09g0240611 Helianthus annuus HOM05D002989 ORTHO05D003218 9.6e-13 77.0 114 41.2
GSVIVG01003115001 Vitis vinifera HOM05D002989 ORTHO05D003218 9.6e-13 77.0 90 43.3
Aqoxy7G03495 Aquilegia oxysepala HOM05D002989 ORTHO05D003218 1.3e-12 76.6 116 37.1
Lsat_1_v5_gn_9_7440 Lactuca sativa HOM05D002989 ORTHO05D003218 1.3e-12 76.6 114 41.2
COL.COLO4_09194 Corchorus olitorius HOM05D002989 ORTHO05D003218 1.6e-12 76.3 113 40.7
HanXRQChr09g0240711 Helianthus annuus HOM05D002989 ORTHO05D003218 1.6e-12 76.3 111 41.4
THA.LOC104809895 Tarenaya hassleriana HOM05D002989 ORTHO05D003218 1.6e-12 76.3 113 40.7
Os11g0586100 Oryza sativa ssp. japonica HOM05D002989 ORTHO05D003218 2.1e-12 75.9 102 43.1
Solyc09g065650.3 Solanum lycopersicum HOM05D002989 ORTHO05D003218 2.1e-12 75.9 118 39.0
Oeu025764.3 Olea europaea HOM05D002989 ORTHO05D003218 4.8e-12 74.7 138 36.2
Cfa006196 Carpinus fangiana HOM05D002989 ORTHO05D003218 6.2e-12 74.3 111 43.2
MD00G1147300 Malus domestica HOM05D002989 ORTHO05D003218 6.2e-12 74.3 114 38.6
MD08G1204000 Malus domestica HOM05D002989 ORTHO05D003218 6.2e-12 74.3 114 38.6
Nn1g02454 Nelumbo nucifera HOM05D002989 ORTHO05D003218 6.2e-12 74.3 115 41.7
CAN.G380.7 Capsicum annuum HOM05D002989 ORTHO05D003218 8.2e-12 73.9 118 38.1
HanXRQChr09g0240651 Helianthus annuus HOM05D002989 ORTHO05D003218 8.2e-12 73.9 114 41.2
HanXRQChr09g0240681 Helianthus annuus HOM05D002989 ORTHO05D003218 8.2e-12 73.9 114 40.4
AL5G46190 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 2.4e-11 72.4 113 37.2
Atru.chr5.1516 Acer truncatum HOM05D002989 ORTHO05D003218 3.1e-11 72.0 89 47.2
Peaxi162Scf00230g00019 Petunia axillaris HOM05D002989 ORTHO05D003218 3.1e-11 72.0 118 37.3
MSTRG.18266 Avicennia marina HOM05D002989 ORTHO05D003218 4.0e-11 71.6 118 36.4
Sc17g0001200 Simmondsia chinensis HOM05D002989 ORTHO05D003218 4.0e-11 71.6 93 44.1
ATR0665G490 Amborella trichopoda HOM05D002989 ORTHO05D003218 5.3e-11 71.2 113 38.1
Manes.01G204300 Manihot esculenta HOM05D002989 ORTHO05D003218 5.3e-11 71.2 89 43.8
Sopen09g027400 Solanum pennellii HOM05D002989 ORTHO05D003218 5.3e-11 71.2 118 37.3
Migut.D00359 Erythranthe guttata HOM05D002989 ORTHO05D003218 6.9e-11 70.9 138 33.3
Nitab4.5_0000459g0030 Nicotiana tabacum HOM05D002989 ORTHO05D003218 6.9e-11 70.9 118 36.4
Nitab4.5_0003775g0010 Nicotiana tabacum HOM05D002989 ORTHO05D003218 6.9e-11 70.9 118 36.4
Sp5g00210 Schrenkiella parvula HOM05D002989 ORTHO05D003218 1.2e-10 70.1 114 36.8
AT3G63340 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 1.5e-10 69.7 113 36.3
Cc01_g19030 Coffea canephora HOM05D002989 ORTHO05D003218 2.6e-10 68.9 118 39.8
Thhalv10005760m.g Eutrema salsugineum HOM05D002989 ORTHO05D003218 2.6e-10 68.9 113 38.1
SGA_v2.0_scaffold1G00532 Striga asiatica HOM05D002989 ORTHO05D003218 2.6e-10 68.9 119 35.3
MSTRG.21529 Avicennia marina HOM05D002989 ORTHO05D003218 3.4e-10 68.6 96 42.7
AT3G63320 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 7.6e-10 67.4 113 36.3
EL10Ac5g10497 Beta vulgaris HOM05D002989 ORTHO05D003218 7.6e-10 67.4 114 39.5
Duzib114G0118 Durio zibethinus HOM05D002989 ORTHO05D003218 7.6e-10 67.4 76 48.7
MD00G1147600 Malus domestica HOM05D002989 ORTHO05D003218 7.6e-10 67.4 116 38.8
Sabra05G0163900 Salix brachista HOM05D002989 ORTHO05D003218 7.6e-10 67.4 89 41.6
Hund02863 Selenicereus undatus HOM05D002989 ORTHO05D003218 7.6e-10 67.4 114 34.2
SEGI_15483 Sequoiadendron giganteum HOM05D017310 ORTHO05D003218 1.0e-09 67.0 108 36.1
AL5G46180 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 1.3e-09 66.6 113 36.3
CSS0028390 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 1.3e-09 66.6 88 43.2
CSS0049118 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 1.3e-09 66.6 88 43.2
Haze_04649 Corylus avellana HOM05D002989 ORTHO05D003218 1.3e-09 66.6 90 40.0
RcHm_v2.0_Chr3g0479641 Rosa chinensis HOM05D002989 ORTHO05D003218 1.7e-09 66.2 112 37.5
A04p00100 Brassica napus HOM05D002989 ORTHO05D003218 2.2e-09 65.9 114 36.8
C04p29910 Brassica napus HOM05D002989 ORTHO05D003218 2.2e-09 65.9 114 36.8
BolC4t24522H Brassica oleracea HOM05D002989 ORTHO05D003218 2.2e-09 65.9 114 36.8
BraA04t15730Z Brassica rapa HOM05D002989 ORTHO05D003218 2.2e-09 65.9 114 36.8
CSS0037436 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 2.2e-09 65.9 91 44.0
Psat7g009680 Pisum sativum HOM05D001804 ORTHO05D010716 2.2e-09 65.9 30 96.7
QL12p042043 Quercus lobata HOM05D002989 ORTHO05D003218 2.2e-09 65.9 90 41.1
Actinidia19960 Actinidia chinensis HOM05D002989 ORTHO05D003218 2.9e-09 65.5 91 42.9
Ah.11g050240 Amaranthus hybridus HOM05D002989 ORTHO05D003218 2.9e-09 65.5 114 36.0
CSS0009751 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 2.9e-09 65.5 91 44.0
CSS0041745 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 2.9e-09 65.5 91 44.0
DCAR_012504 Daucus carota HOM05D002989 ORTHO05D003218 2.9e-09 65.5 91 45.1
Nitab4.5_0013316g0010 Nicotiana tabacum HOM05D002989 ORTHO05D003218 2.9e-09 65.5 87 41.4
Sp5g00200 Schrenkiella parvula HOM05D002989 ORTHO05D003218 3.8e-09 65.1 114 36.8
CSS0036045 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 4.9e-09 64.7 89 42.7
Carub.0005s2998 Capsella rubella HOM05D002989 ORTHO05D003218 4.9e-09 64.7 113 38.1
Migut.D00361 Erythranthe guttata HOM05D002989 ORTHO05D003218 6.5e-09 64.3 85 42.4
Cc01_g19040 Coffea canephora HOM05D002989 ORTHO05D003218 8.4e-09 63.9 94 39.4
Nitab4.5_0001044g0020 Nicotiana tabacum HOM05D002989 ORTHO05D003218 8.4e-09 63.9 95 40.0
Potri.005G214500 Populus trichocarpa HOM05D002989 ORTHO05D003218 8.4e-09 63.9 89 40.4
Sopen06g035490 Solanum pennellii HOM05D002989 ORTHO05D003218 8.4e-09 63.9 86 41.9
CiPaw.07G087100 Carya illinoinensis HOM05D002989 ORTHO05D003218 1.4e-08 63.2 89 39.3
THA.LOC104813803 Tarenaya hassleriana HOM05D002989 ORTHO05D003218 1.4e-08 63.2 86 40.7
Rhsim13G0028600 Rhododendron simsii HOM05D002989 ORTHO05D003218 1.9e-08 62.8 66 48.5
CARHR291630 Cardamine hirsuta HOM05D002989 ORTHO05D003218 2.5e-08 62.4 113 37.2
Aa31LG10G17170 Aethionema arabicum HOM05D002989 ORTHO05D003218 3.2e-08 62.0 113 32.7
TWI60G1134 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 3.2e-08 62.0 105 38.1
CSS0037111 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 4.2e-08 61.6 91 41.8
CAN.G771.9 Capsicum annuum HOM05D002989 ORTHO05D003218 4.2e-08 61.6 90 37.8
unitig_0.g140 Utricularia gibba HOM05D002989 ORTHO05D003218 5.5e-08 61.2 116 34.5
SalBow4G0275 Salvia bowleyana HOM05D002989 ORTHO05D003218 7.1e-08 60.8 131 32.8
SGA_v2.0_scaffold1G00529 Striga asiatica HOM05D002989 ORTHO05D003218 7.1e-08 60.8 84 45.2
Ciclev10023714m.g Citrus clementina HOM05D002989 ORTHO05D003218 9.3e-08 60.5 67 44.8
Eucgr.K03327 Eucalyptus grandis HOM05D002989 ORTHO05D003218 9.3e-08 60.5 93 40.9
AUR62032285 Chenopodium quinoa HOM05D002989 ORTHO05D003218 1.2e-07 60.1 114 34.2
Lj2C1165T16 Lonicera japonica HOM05D002989 ORTHO05D003218 1.2e-07 60.1 91 38.5
Cfa006195 Carpinus fangiana HOM05D002989 ORTHO05D003218 1.6e-07 59.7 63 47.6
Peaxi162Scf00608g00921 Petunia axillaris HOM05D002989 ORTHO05D003218 1.6e-07 59.7 85 38.8
TWI60G0894 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 2.1e-07 59.3 88 40.9
vmacro02611 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 2.7e-07 58.9 89 40.4
vmacro02612 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 3.5e-07 58.5 84 39.3
Lsat_1_v5_gn_5_185781 Lactuca sativa HOM05D002989 ORTHO05D003218 4.6e-07 58.2 67 41.8
QL12p042048 Quercus lobata HOM05D002989 ORTHO05D003218 4.6e-07 58.2 90 38.9
AUR62032286 Chenopodium quinoa HOM05D002989 ORTHO05D003218 6.0e-07 57.8 83 43.4
unitig_0.g137 Utricularia gibba HOM05D002989 ORTHO05D003218 6.0e-07 57.8 87 39.1
CDE05G0153 Ceratophyllum demersum HOM05D002989 ORTHO05D003218 1.3e-06 56.6 33 69.7
Pp3c16_17820 Physcomitrium patens HOM05D002989 ORTHO05D003218 2.3e-06 55.8 112 36.6
HPP92_020348 Vanilla planifolia HOM05D002989 ORTHO05D003218 5.1e-06 54.7 61 44.3
GSVIVG01019525001 Vitis vinifera HOM05D000426 ORTHO05D000328 5.1e-06 54.7 70 41.4
PSO170G6435 Papaver somniferum HOM05D000426 ORTHO05D000328 8.7e-06 53.9 87 39.1
SalBow4G0873 Salvia bowleyana HOM05D002989 ORTHO05D003218 8.7e-06 53.9 91 36.3


User provided reference genes

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