Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g208080 Pisum sativum HOM05D007083 ORTHO05D008801 1.2e-27 128.6 60 100.0
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 1.8e-18 98.2 59 78.0
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 5.6e-17 93.2 59 67.8
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 7.4e-17 92.8 59 69.5
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 1.1e-15 89.0 49 79.6
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 1.1e-15 89.0 57 66.7
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 4.0e-15 87.0 54 70.4
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 4.0e-15 87.0 54 70.4
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 3.4e-14 84.0 56 66.1
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 3.8e-13 80.5 59 61.0
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 3.8e-13 80.5 59 61.0
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 3.8e-13 80.5 59 61.0
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 6.5e-13 79.7 57 59.6
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 8.4e-13 79.3 57 54.4
Carub.0003s2940 Capsella rubella HOM05D007083 ORTHO05D008801 1.9e-12 78.2 57 57.9
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.9e-12 78.2 57 57.9
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 1.9e-12 78.2 57 57.9
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 2.5e-12 77.8 59 61.0
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 2.5e-12 77.8 58 58.6
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 3.2e-12 77.4 57 56.1
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 5.5e-12 76.6 57 56.1
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 5.5e-12 76.6 50 64.0
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 5.5e-12 76.6 56 55.4
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 7.1e-12 76.3 59 59.3
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 1.2e-11 75.5 55 54.5
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 1.2e-11 75.5 57 54.4
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 1.6e-11 75.1 59 54.2
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 1.6e-11 75.1 57 56.1
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 2.1e-11 74.7 59 52.5
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 2.1e-11 74.7 59 50.8
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 2.7e-11 74.3 56 53.6
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 2.7e-11 74.3 54 57.4
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 2.7e-11 74.3 59 52.5
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 3.5e-11 73.9 57 54.4
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 3.5e-11 73.9 57 52.6
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 3.5e-11 73.9 57 54.4
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 4.6e-11 73.6 59 54.2
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 6.0e-11 73.2 57 57.9
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 6.0e-11 73.2 57 50.9
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 7.9e-11 72.8 57 50.9
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 7.9e-11 72.8 54 57.4
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 1.0e-10 72.4 54 55.6
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 1.3e-10 72.0 57 52.6
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 1.3e-10 72.0 57 52.6
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 1.3e-10 72.0 57 52.6
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 1.3e-10 72.0 59 50.8
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 1.8e-10 71.6 52 57.7
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 1.8e-10 71.6 52 57.7
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 1.8e-10 71.6 55 52.7
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 1.8e-10 71.6 57 50.9
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 2.3e-10 71.2 56 55.4
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 3.9e-10 70.5 55 54.5
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 5.1e-10 70.1 54 51.9
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 8.7e-10 69.3 59 49.2
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 8.7e-10 69.3 56 51.8
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 8.7e-10 69.3 59 47.5
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 8.7e-10 69.3 54 51.9
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 8.7e-10 69.3 57 52.6
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 1.5e-09 68.6 53 52.8
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 1.9e-09 68.2 59 47.5
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 1.9e-09 68.2 59 49.2
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 3.3e-09 67.4 56 50.0
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 4.3e-09 67.0 57 52.6
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 5.7e-09 66.6 59 49.2
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 5.7e-09 66.6 57 47.4
Gohir.A04G115700 Gossypium hirsutum HOM05D007083 ORTHO05D008801 7.4e-09 66.2 49 57.1
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 2.8e-08 64.3 52 51.9
RcHm_v2.0_Chr6g0260161 Rosa chinensis HOM05D007083 ORTHO05D008801 2.8e-08 64.3 48 56.2
RcHm_v2.0_Chr6g0260531 Rosa chinensis HOM05D007083 ORTHO05D008801 3.7e-08 63.9 48 56.2
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 4.8e-08 63.5 59 47.5
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.1e-07 62.4 53 47.2
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 1.8e-07 61.6 59 37.3
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 1.8e-07 61.6 47 55.3
RcHm_v2.0_Chr6g0260661 Rosa chinensis HOM05D007083 ORTHO05D008801 1.8e-07 61.6 47 55.3
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 2.4e-07 61.2 52 46.2
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 2.4e-07 61.2 52 46.2
RcHm_v2.0_Chr6g0260391 Rosa chinensis HOM05D007083 ORTHO05D008801 2.4e-07 61.2 48 54.2
RcHm_v2.0_Chr6g0260761 Rosa chinensis HOM05D007083 ORTHO05D008801 2.4e-07 61.2 45 55.6
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 2.4e-07 61.2 54 46.3
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 3.1e-07 60.8 51 49.0
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 6.9e-07 59.7 54 48.1
RcHm_v2.0_Chr6g0266771 Rosa chinensis HOM05D007083 ORTHO05D008801 9.0e-07 59.3 48 52.1
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 5.9e-06 56.6 50 46.0


User provided reference genes

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