Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 9.4e-131 470.3 257 100.0
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 2.4e-118 429.1 257 89.1
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.2e-112 410.2 257 85.6
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 4.4e-112 408.3 257 82.9
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 1.3e-111 406.8 254 83.9
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 6.3e-111 404.4 257 82.1
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.4e-110 403.3 254 83.5
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 2.4e-110 402.5 257 81.7
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 2.7e-109 399.1 255 83.1
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.3e-108 396.7 254 82.7
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.7e-108 396.4 257 82.1
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 2.6e-104 382.5 254 78.0
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 2.2e-103 379.4 254 78.0
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.8e-103 379.0 254 77.6
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 6.3e-103 377.9 254 77.2
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 3.1e-102 375.6 254 77.6
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 7.0e-102 374.4 254 76.4
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 9.2e-102 374.0 256 77.0
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.6e-101 373.2 254 76.0
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 2.0e-101 372.9 254 76.8
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 2.0e-101 372.9 254 76.8
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 3.5e-101 372.1 251 77.7
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 4.5e-101 371.7 254 76.0
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 1.3e-100 370.2 254 76.8
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 1.3e-100 370.2 245 78.8
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.7e-100 369.8 255 75.3
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.7e-100 369.8 254 76.0
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 3.8e-100 368.6 254 74.8
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 5.0e-100 368.2 252 75.8
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 5.0e-100 368.2 255 74.9
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 6.6e-100 367.9 254 74.8
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 6.6e-100 367.9 254 76.0
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 8.6e-100 367.5 254 76.0
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.1e-99 367.1 254 75.6
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.1e-99 367.1 254 75.6
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.9e-99 366.3 258 75.6
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.9e-99 366.3 255 74.5
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.3e-99 365.5 255 74.9
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 3.3e-99 365.5 254 75.6
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 9.5e-99 364.0 254 76.0
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 9.5e-99 364.0 254 74.8
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 9.5e-99 364.0 254 76.0
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.6e-98 363.2 256 73.4
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 3.6e-98 362.1 254 75.6
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.7e-98 361.7 254 74.4
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 4.7e-98 361.7 256 75.4
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 4.7e-98 361.7 254 75.2
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.0e-97 360.5 237 80.6
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.0e-97 360.5 256 73.4
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.4e-97 360.1 254 74.0
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 1.4e-97 360.1 249 76.3
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 3.0e-97 359.0 264 73.1
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 6.8e-97 357.8 257 72.8
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 6.8e-97 357.8 254 71.3
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 8.9e-97 357.5 255 73.3
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.2e-96 357.1 255 72.9
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 2.6e-96 355.9 254 74.4
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 7.5e-96 354.4 254 74.0
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.3e-95 353.6 251 74.1
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 2.2e-95 352.8 251 74.1
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 2.2e-95 352.8 252 73.8
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 8.3e-95 350.9 253 72.3
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 8.3e-95 350.9 249 73.5
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.1e-94 350.5 254 73.6
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 4.1e-94 348.6 251 74.1
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 4.1e-94 348.6 252 73.0
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 9.2e-94 347.4 253 73.9
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 1.2e-93 347.1 241 74.3
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.2e-93 347.1 255 73.7
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.7e-93 345.9 235 75.3
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 3.5e-93 345.5 240 73.3
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 3.5e-93 345.5 254 72.0
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 3.5e-93 345.5 235 74.9
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 5.9e-93 344.7 235 74.9
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 5.9e-93 344.7 235 74.9
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 5.9e-93 344.7 235 74.9
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 5.9e-93 344.7 254 71.7
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 7.8e-93 344.4 254 72.4
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 7.8e-93 344.4 248 73.4
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.0e-92 344.0 235 74.9
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.3e-92 343.6 235 74.9
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 1.3e-92 343.6 235 74.9
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 2.3e-92 342.8 253 70.4
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 2.3e-92 342.8 228 77.2
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 3.0e-92 342.4 256 71.9
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 3.9e-92 342.0 244 73.0
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.9e-92 342.0 254 72.0
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 6.6e-92 341.3 253 70.4
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 6.6e-92 341.3 251 73.3
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 8.6e-92 340.9 244 72.1
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 8.6e-92 340.9 235 74.0
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 8.6e-92 340.9 254 71.7
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 8.6e-92 340.9 225 76.9
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.5e-91 340.1 254 70.5
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 2.5e-91 339.3 235 73.6
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.5e-91 339.3 225 77.8
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 4.3e-91 338.6 231 75.8
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 4.3e-91 338.6 298 64.4
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 4.3e-91 338.6 255 70.2
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 5.6e-91 338.2 254 70.1
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.6e-90 336.7 254 71.7
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.8e-90 335.9 255 71.0
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 4.7e-90 335.1 250 72.8
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 4.7e-90 335.1 254 69.3
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.3e-89 332.8 235 72.8
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 2.3e-89 332.8 254 68.9
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 6.8e-89 331.3 251 69.3
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.4e-88 328.6 251 68.9
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 5.8e-88 328.2 250 72.0
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 7.5e-88 327.8 243 71.6
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 7.5e-88 327.8 258 70.5
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.1e-86 323.9 226 74.8
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.9e-86 323.2 254 68.1
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 7.0e-86 321.2 200 82.5
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 4.6e-85 318.5 251 68.1
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 7.8e-85 317.8 201 83.1
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 5.6e-83 311.6 249 66.3
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 2.6e-80 302.8 224 71.4
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 5.8e-80 301.6 231 68.0
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.3e-79 300.4 235 67.7
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.1e-78 297.4 236 71.6
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.3e-76 289.7 235 66.4
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.8e-74 282.7 189 77.8
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.3e-73 279.6 189 74.6
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 3.1e-73 279.3 225 68.0
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 8.9e-73 277.7 227 64.8
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 1.5e-72 276.9 249 63.5
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 8.4e-71 271.2 235 62.6
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 2.1e-69 266.5 221 60.2
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.5e-69 265.8 246 58.5
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.3e-68 263.8 161 82.6
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 8.6e-68 261.2 232 60.8
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 2.5e-67 259.6 237 57.0
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 4.3e-67 258.8 245 57.1
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 5.6e-67 258.5 237 54.9
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.9e-62 243.4 189 66.7
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 4.6e-61 238.8 240 55.4
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 8.7e-60 234.6 187 63.1
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 8.4e-55 218.0 170 68.2
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 8.4e-55 218.0 256 55.9
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.6e-53 213.8 130 82.3
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 1.8e-52 210.3 149 75.2
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.7e-52 208.4 173 64.2
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 2.4e-49 199.9 232 44.8
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.2e-46 189.5 151 65.6
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 2.4e-41 173.3 154 63.0
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.4e-40 169.5 130 70.8
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.1e-37 160.2 105 73.3
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.7e-29 133.3 80 77.5
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.6e-29 132.9 82 80.5
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 1.0e-28 131.3 96 68.8
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 4.3e-27 125.9 64 93.8
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.8e-17 94.0 56 83.9
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 7.2e-14 82.0 76 63.2
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 3.6e-13 79.7 112 44.6
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.4e-11 72.8 63 57.1
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 4.5e-08 62.8 46 69.6


User provided reference genes

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