Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 5.3e-159 564.3 286 100.0
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 4.6e-118 428.3 287 79.1
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 5.8e-113 411.4 303 74.3
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 4.6e-110 401.7 293 74.7
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 7.8e-110 401.0 292 74.7
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 1.0e-109 400.6 292 75.0
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 1.0e-109 400.6 293 74.4
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 1.2e-105 387.1 292 74.0
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 5.8e-105 384.8 306 69.6
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 7.8e-102 374.4 295 68.8
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 1.5e-100 370.2 292 71.9
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 2.0e-97 359.8 228 82.0
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 1.2e-94 350.5 295 68.8
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 4.3e-84 315.5 337 54.6
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 6.9e-82 308.1 309 59.5
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 3.8e-80 302.4 299 57.5
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 4.9e-80 302.0 295 58.3
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.3e-77 293.9 300 57.0
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 3.9e-77 292.4 304 55.9
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 1.9e-76 290.0 306 54.2
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 9.6e-76 287.7 332 52.4
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 3.4e-73 279.3 305 53.8
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 9.9e-73 277.7 300 54.0
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 4.9e-72 275.4 307 51.8
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 6.4e-72 275.0 301 52.2
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 3.2e-71 272.7 325 50.8
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 1.2e-70 270.8 333 50.2
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 1.3e-69 267.3 327 48.0
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.3e-69 266.5 302 51.3
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 5.1e-69 265.4 294 52.0
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 5.1e-69 265.4 297 51.5
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 6.7e-69 265.0 325 48.6
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.1e-68 264.2 324 50.3
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 4.3e-68 262.3 307 52.1
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 5.6e-68 261.9 308 48.7
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 5.6e-68 261.9 316 49.7
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 5.6e-68 261.9 219 63.5
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 9.6e-68 261.2 316 49.4
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 3.7e-67 259.2 252 57.9
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 1.1e-66 257.7 295 51.5
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 1.4e-66 257.3 300 49.7
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 1.8e-66 256.9 328 48.5
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.8e-66 256.9 316 49.7
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 3.1e-66 256.1 315 48.9
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 4.0e-66 255.8 324 47.8
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 5.3e-66 255.4 303 51.8
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 9.0e-66 254.6 295 51.9
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 2.0e-65 253.4 309 48.5
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 2.6e-65 253.1 220 62.7
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 3.8e-64 249.2 351 46.7
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 4.9e-64 248.8 310 48.1
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 8.4e-64 248.1 305 51.1
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 1.1e-63 247.7 306 47.1
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 1.1e-63 247.7 344 46.5
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 1.1e-63 247.7 295 51.2
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 5.5e-63 245.4 296 49.0
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 9.3e-63 244.6 291 50.2
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 1.2e-62 244.2 327 46.8
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 3.5e-62 242.7 305 49.8
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 3.5e-62 242.7 313 47.3
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 6.0e-62 241.9 213 62.4
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 7.9e-62 241.5 296 48.3
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 1.0e-61 241.1 299 46.8
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 1.8e-61 240.4 302 47.7
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 1.8e-61 240.4 301 47.8
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 3.0e-61 239.6 300 51.0
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 8.7e-61 238.0 293 48.8
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 1.9e-60 236.9 297 46.5
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 2.5e-60 236.5 293 48.1
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 2.5e-60 236.5 318 44.3
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 9.6e-60 234.6 285 50.5
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 9.6e-60 234.6 293 48.1
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 1.3e-59 234.2 302 49.3
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 2.1e-59 233.4 290 52.1
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 2.8e-59 233.0 316 46.5
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 2.8e-59 233.0 298 50.0
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 2.8e-59 233.0 312 46.8
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 6.3e-59 231.9 302 46.7
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 1.4e-58 230.7 310 47.1
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.4e-58 230.7 315 46.7
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 1.8e-58 230.3 305 48.9
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 1.8e-58 230.3 313 45.4
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 1.8e-58 230.3 302 48.7
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 3.1e-58 229.6 305 46.9
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 4.1e-58 229.2 305 45.2
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 5.3e-58 228.8 306 47.4
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 6.9e-58 228.4 293 48.5
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 6.9e-58 228.4 321 45.5
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 6.9e-58 228.4 321 45.8
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 9.0e-58 228.0 317 46.1
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.2e-57 227.6 321 44.2
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 1.2e-57 227.6 314 48.7
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.2e-57 227.6 232 56.0
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 1.5e-57 227.3 299 47.5
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 2.2e-56 223.4 321 44.9
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 2.2e-56 223.4 321 44.9
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 2.2e-56 223.4 321 44.9
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 2.2e-56 223.4 313 44.7
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 2.9e-56 223.0 367 41.4
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 1.1e-55 221.1 306 46.7
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 1.1e-55 221.1 306 46.7
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.1e-55 221.1 310 44.5
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 2.7e-54 216.5 305 45.6
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 2.7e-54 216.5 314 44.3
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 6.1e-54 215.3 306 45.4
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 7.9e-54 214.9 302 46.7
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 7.9e-54 214.9 289 45.7
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 1.8e-53 213.8 316 44.3
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 2.3e-53 213.4 317 42.9
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 3.0e-53 213.0 315 43.8
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 5.1e-53 212.2 302 47.0
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 8.7e-53 211.5 276 47.8
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 1.5e-52 210.7 313 42.8
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.3e-52 209.5 306 45.4
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 4.3e-52 209.1 310 44.5
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 4.3e-52 209.1 310 44.5
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 1.3e-51 207.6 308 43.8
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 2.8e-51 206.5 221 52.5
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.1e-50 204.5 307 43.6
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 2.0e-49 200.3 273 46.2
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 2.2e-48 196.8 302 45.0
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 4.6e-46 189.1 311 42.4
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.0e-45 188.0 301 41.5
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 3.7e-43 179.5 372 35.5
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 9.1e-42 174.9 325 39.4
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 3.4e-41 172.9 294 38.8
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 3.2e-39 166.4 252 41.3
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 1.6e-38 164.1 198 53.0
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 3.6e-38 162.9 145 62.8
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 2.3e-37 160.2 272 39.7
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 4.4e-36 156.0 305 36.4
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 3.2e-31 139.8 341 32.3
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 5.5e-31 139.0 190 45.8
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 1.0e-29 134.8 304 35.9
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 1.0e-29 134.8 304 35.9
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 4.0e-29 132.9 153 52.3
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 8.2e-27 125.2 277 36.5
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.2e-25 121.3 372 30.6
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 6.5e-24 115.5 93 64.5
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.2e-23 112.8 370 28.9
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.0e-21 108.2 348 29.3
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.3e-21 107.1 364 31.3
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 5.2e-21 105.9 333 28.8
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.5e-20 104.4 367 29.2
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 4.4e-20 102.8 336 30.1
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 8.3e-19 98.6 164 39.6
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 3.5e-17 93.2 122 46.7
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 2.5e-15 87.0 218 33.5
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 1.0e-13 81.6 124 41.9
FAN15G3283 Fragaria x ananassa HOM05D001401 ORTHO05D006368 2.3e-13 80.5 80 57.5
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 6.8e-13 79.0 55 70.9
QL11p040051 Quercus lobata HOM05D001401 ORTHO05D006368 6.8e-13 79.0 77 59.7
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 1.5e-12 77.8 84 57.1
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 9.8e-12 75.1 85 45.9
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.2e-11 73.9 332 27.1
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 4.5e-09 66.2 201 26.9
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.7e-08 64.3 199 27.1
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 8.6e-08 62.0 260 25.0
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 1.1e-07 61.6 186 31.7
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 1.9e-07 60.8 87 41.4
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 3.3e-07 60.1 120 39.2
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 7.3e-07 58.9 173 31.8
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 1.6e-06 57.8 88 42.0
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 2.8e-06 57.0 118 35.6
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 4.7e-06 56.2 211 28.9
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 6.1e-06 55.8 103 41.7
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 6.1e-06 55.8 161 32.9


User provided reference genes

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