Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g201720 Pisum sativum HOM05D001439 ORTHO05D037370 1.1e-98 363.2 177 100.0
Psat7g201640 Pisum sativum HOM05D001439 ORTHO05D037370 5.8e-39 164.9 91 93.4
Psat0s3732g0080 Pisum sativum HOM05D001439 ORTHO05D037370 5.1e-35 151.8 90 87.8
Psat7g167560 Pisum sativum HOM05D001439 ORTHO05D002726 8.7e-27 124.4 75 82.7
Ca_18919_v3 Cicer arietinum L. HOM05D001439 ORTHO05D002726 1.0e-19 100.9 76 67.1
Medtr4g078860 Medicago truncatula HOM05D001439 ORTHO05D002726 3.3e-18 95.9 76 67.1
Lj3g0019816 Lotus japonicus HOM05D001439 ORTHO05D002726 7.4e-18 94.7 76 65.8
TPR.G9356 Trifolium pratense HOM05D001439 ORTHO05D002726 7.4e-18 94.7 75 68.0
Glyma.06G288900 Glycine max HOM05D001439 ORTHO05D002726 9.6e-18 94.4 89 57.3
arahy.Tifrunner.gnm1.ann1.31J8XM Arachis hypogaea HOM05D001439 ORTHO05D002726 3.7e-17 92.4 90 55.6
arahy.Tifrunner.gnm1.ann1.G6BTL7 Arachis hypogaea HOM05D001439 ORTHO05D002726 3.7e-17 92.4 90 55.6
Cfa014661 Carpinus fangiana HOM05D001439 ORTHO05D002726 2.5e-13 79.7 76 56.6
Haze_13244 Corylus avellana HOM05D001439 ORTHO05D002726 2.5e-13 79.7 76 56.6
Dinv29934 Davidia involucrata HOM05D001439 ORTHO05D002726 4.6e-12 75.5 71 57.7
Thecc.02G186300 Theobroma cacao HOM05D001439 ORTHO05D002726 1.8e-11 73.6 71 56.3
QL08p040227 Quercus lobata HOM05D001439 ORTHO05D002726 3.0e-11 72.8 63 55.6
Dinv06859 Davidia involucrata HOM05D001439 ORTHO05D002726 3.9e-11 72.4 76 53.9
Duzib132G0536 Durio zibethinus HOM05D001439 ORTHO05D002726 5.1e-11 72.0 70 58.6
Manes.13G141800 Manihot esculenta HOM05D001439 ORTHO05D002726 1.9e-10 70.1 72 50.0
CSS0016347 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 2.5e-10 69.7 75 49.3
CSS0047003 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 2.5e-10 69.7 75 49.3
CiPaw.03G181600 Carya illinoinensis HOM05D001439 ORTHO05D002726 2.5e-10 69.7 62 54.8
Ciclev10014022m.g Citrus clementina HOM05D001439 ORTHO05D002726 7.4e-10 68.2 71 57.7
Atru.chr6.2869 Acer truncatum HOM05D001439 ORTHO05D002726 9.7e-10 67.8 67 58.2
TAR627G0298 Trochodendron aralioides HOM05D001439 ORTHO05D002726 9.7e-10 67.8 76 48.7
GSVIVG01020605001 Vitis vinifera HOM05D001439 ORTHO05D002726 1.3e-09 67.4 56 60.7
PSO210G6356 Papaver somniferum HOM05D001439 ORTHO05D002726 2.2e-09 66.6 75 50.7
PSO832G3479 Papaver somniferum HOM05D001439 ORTHO05D002726 4.8e-09 65.5 75 49.3
Cc05_g07750 Coffea canephora HOM05D001439 ORTHO05D002726 6.3e-09 65.1 57 56.1
DCAR_021265 Daucus carota HOM05D001439 ORTHO05D002726 8.2e-09 64.7 79 48.1
Nn1g04237 Nelumbo nucifera HOM05D001439 ORTHO05D002726 1.1e-08 64.3 76 52.6
TWI23G0951 Tripterygium wilfordii HOM05D001439 ORTHO05D002726 1.1e-08 64.3 43 74.4
Sc12g0003230 Simmondsia chinensis HOM05D001439 ORTHO05D002726 1.4e-08 63.9 50 62.0
Eucgr.K01058 Eucalyptus grandis HOM05D001439 ORTHO05D002726 1.8e-08 63.5 70 51.4
FvH4_6g26700 Fragaria vesca HOM05D001439 ORTHO05D002726 1.8e-08 63.5 71 49.3
FAN09G0796 Fragaria x ananassa HOM05D001439 ORTHO05D002726 1.8e-08 63.5 71 47.9
FAN02G3093 Fragaria x ananassa HOM05D001439 ORTHO05D002726 2.4e-08 63.2 71 47.9
FAN05G3838 Fragaria x ananassa HOM05D001439 ORTHO05D002726 2.4e-08 63.2 71 47.9
Rhsim06G0136900 Rhododendron simsii HOM05D001439 ORTHO05D002726 2.4e-08 63.2 70 51.4
RhsimUnG0013600 Rhododendron simsii HOM05D001439 ORTHO05D002726 2.4e-08 63.2 70 51.4
Sabra07G0109800 Salix brachista HOM05D001439 ORTHO05D002726 3.1e-08 62.8 66 50.0
Gohir.D06G209600 Gossypium hirsutum HOM05D001439 ORTHO05D002726 4.1e-08 62.4 70 52.9
Gorai.010G256900 Gossypium raimondii HOM05D001439 ORTHO05D002726 4.1e-08 62.4 70 52.9
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 5.3e-08 62.0 47 61.7
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 5.3e-08 62.0 68 51.5
Sabra17G0012700 Salix brachista HOM05D001439 ORTHO05D002726 5.3e-08 62.0 71 46.5
Actinidia07602 Actinidia chinensis HOM05D001439 ORTHO05D002726 6.9e-08 61.6 48 64.6
Gohir.A06G211600 Gossypium hirsutum HOM05D001439 ORTHO05D002726 6.9e-08 61.6 70 52.9
Dinv17354 Davidia involucrata HOM05D001439 ORTHO05D002726 9.0e-08 61.2 56 55.4
Duzib235G0176 Durio zibethinus HOM05D001439 ORTHO05D002726 9.0e-08 61.2 68 54.4
TWI14G1311 Tripterygium wilfordii HOM05D001439 ORTHO05D002726 9.0e-08 61.2 43 69.8
HanXRQChr15g0469531 Helianthus annuus HOM05D001439 ORTHO05D002726 1.2e-07 60.8 99 41.4
Ciclev10015005m.g Citrus clementina HOM05D001439 ORTHO05D002726 1.5e-07 60.5 74 54.1
Gohir.A12G139300 Gossypium hirsutum HOM05D001439 ORTHO05D002726 1.5e-07 60.5 57 56.1
Actinidia26141 Actinidia chinensis HOM05D001439 ORTHO05D002726 2.0e-07 60.1 44 68.2
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 2.0e-07 60.1 46 60.9
Gorai.008G155100 Gossypium raimondii HOM05D001439 ORTHO05D002726 2.0e-07 60.1 57 56.1
Potri.007G135500 Populus trichocarpa HOM05D001439 ORTHO05D002726 2.0e-07 60.1 65 47.7
C07p26860 Brassica napus HOM05D001439 ORTHO05D002726 2.6e-07 59.7 76 43.4
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 2.6e-07 59.7 45 64.4
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 2.6e-07 59.7 73 45.2
Sp2g09000 Schrenkiella parvula HOM05D001439 ORTHO05D002726 2.6e-07 59.7 67 49.3
THA.LOC104826040 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 2.6e-07 59.7 43 62.8
BcaC06g31644 Brassica carinata HOM05D001439 ORTHO05D002726 3.4e-07 59.3 67 52.2
A06p47410 Brassica napus HOM05D001439 ORTHO05D002726 3.4e-07 59.3 44 61.4
Peaxi162Scf00926g00006 Petunia axillaris HOM05D001439 ORTHO05D002726 3.4e-07 59.3 45 60.0
Potri.017G016200 Populus trichocarpa HOM05D001439 ORTHO05D002726 3.4e-07 59.3 71 43.7
TAR626G0101 Trochodendron aralioides HOM05D001439 ORTHO05D002726 3.4e-07 59.3 71 50.7
vmacro15932 Vaccinium macrocarpon HOM05D001439 ORTHO05D002726 3.4e-07 59.3 57 56.1
EL10Ac9g20819 Beta vulgaris HOM05D001439 ORTHO05D002726 4.5e-07 58.9 65 47.7
FAN14G5737 Fragaria x ananassa HOM05D001439 ORTHO05D002726 4.5e-07 58.9 67 47.8
Hma1.2p1_0558F.1_g178470 Hydrangea macrophylla HOM05D001439 ORTHO05D002726 4.5e-07 58.9 44 61.4
Oeu016007.1 Olea europaea HOM05D001439 ORTHO05D002726 4.5e-07 58.9 67 53.7
Migut.M01107 Erythranthe guttata HOM05D001439 ORTHO05D002726 5.9e-07 58.5 47 59.6
FvH4_3g08620 Fragaria vesca HOM05D001439 ORTHO05D002726 5.9e-07 58.5 57 54.4
FAN11G1486 Fragaria x ananassa HOM05D001439 ORTHO05D002726 5.9e-07 58.5 57 54.4
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 5.9e-07 58.5 58 51.7
Potri.011G057700 Populus trichocarpa HOM05D001439 ORTHO05D002726 5.9e-07 58.5 58 53.4
BraA06t27612Z Brassica rapa HOM05D001439 ORTHO05D002726 7.7e-07 58.2 56 53.6
CiPaw.09G063400 Carya illinoinensis HOM05D001439 ORTHO05D002726 7.7e-07 58.2 72 50.0
Gohir.D06G209500 Gossypium hirsutum HOM05D001439 ORTHO05D002726 7.7e-07 58.2 45 62.2
Gorai.010G243500 Gossypium raimondii HOM05D001439 ORTHO05D002726 7.7e-07 58.2 45 62.2
Lj1C697G7 Lonicera japonica HOM05D001439 ORTHO05D002726 7.7e-07 58.2 42 66.7
RcHm_v2.0_Chr2g0127091 Rosa chinensis HOM05D001439 ORTHO05D002726 7.7e-07 58.2 72 50.0
Aqoxy4G00628 Aquilegia oxysepala HOM05D001439 ORTHO05D002726 1.0e-06 57.8 44 61.4
AL8G15840 Arabidopsis lyrata HOM05D001439 ORTHO05D002726 1.0e-06 57.8 44 61.4
CANSAT35G2047 Cannabis sativa HOM05D001439 ORTHO05D002726 1.0e-06 57.8 68 47.1
Lj1C693T4 Lonicera japonica HOM05D001439 ORTHO05D002726 1.0e-06 57.8 42 66.7
Nitab4.5_0000621g0070 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.0e-06 57.8 71 47.9
Oeu056520.3 Olea europaea HOM05D001439 ORTHO05D002726 1.0e-06 57.8 44 65.9
SGA_v2.0_scaffold34G13921 Striga asiatica HOM05D001439 ORTHO05D002726 1.0e-06 57.8 61 54.1
Thecc.06G181000 Theobroma cacao HOM05D001439 ORTHO05D002726 1.0e-06 57.8 70 48.6
BcaC06g34584 Brassica carinata HOM05D001439 ORTHO05D002726 1.3e-06 57.4 76 42.1
BolC7t43215H Brassica oleracea HOM05D001439 ORTHO05D002726 1.3e-06 57.4 76 42.1
CDE10G0226 Ceratophyllum demersum HOM05D001439 ORTHO05D002726 1.3e-06 57.4 43 58.1
ClCG01G023260 Citrullus lanatus HOM05D001439 ORTHO05D002726 1.3e-06 57.4 44 63.6
MELO3C007260.2 Cucumis melo HOM05D001439 ORTHO05D002726 1.3e-06 57.4 44 63.6
CsaV3_6G050410 Cucumis sativus L. HOM05D001439 ORTHO05D002726 1.3e-06 57.4 44 63.6
Thhalv10003131m.g Eutrema salsugineum HOM05D001439 ORTHO05D002726 1.3e-06 57.4 57 52.6
Phvul.002G232200 Phaseolus vulgaris HOM05D001439 ORTHO05D002726 1.3e-06 57.4 69 43.5
QL05p042276 Quercus lobata HOM05D001439 ORTHO05D002726 1.3e-06 57.4 72 48.6
RcHm_v2.0_Chr5g0009221 Rosa chinensis HOM05D001439 ORTHO05D002726 1.3e-06 57.4 54 55.6
Sed0000156 Sechium edule HOM05D001439 ORTHO05D002726 1.3e-06 57.4 45 62.2
Carub.0008s0434 Capsella rubella HOM05D001439 ORTHO05D002726 1.7e-06 57.0 44 61.4
CARHR179080 Cardamine hirsuta HOM05D001439 ORTHO05D002726 1.7e-06 57.0 44 59.1
Cpa.g.sc83.96 Carica papaya HOM05D001439 ORTHO05D002726 1.7e-06 57.0 72 50.0
AUR62036057 Chenopodium quinoa HOM05D001439 ORTHO05D002726 1.7e-06 57.0 62 50.0
AUR62038987 Chenopodium quinoa HOM05D001439 ORTHO05D002726 1.7e-06 57.0 62 51.6
Duzib160G0499 Durio zibethinus HOM05D001439 ORTHO05D002726 1.7e-06 57.0 70 48.6
FAN16G2831 Fragaria x ananassa HOM05D001439 ORTHO05D002726 1.7e-06 57.0 54 53.7
Lj6g0010323 Lotus japonicus HOM05D001439 ORTHO05D002726 1.7e-06 57.0 42 64.3
Manes.17G049300 Manihot esculenta HOM05D001439 ORTHO05D002726 1.7e-06 57.0 57 54.4
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.7e-06 57.0 46 58.7
THA.LOC104801160 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 1.7e-06 57.0 89 40.4
AT5G44180 Arabidopsis thaliana HOM05D001439 ORTHO05D002726 2.2e-06 56.6 43 62.8
arahy.Tifrunner.gnm1.ann1.DG2K05 Arachis hypogaea HOM05D001439 ORTHO05D002726 2.2e-06 56.6 44 63.6
arahy.Tifrunner.gnm1.ann1.P48F6M Arachis hypogaea HOM05D001439 ORTHO05D002726 2.2e-06 56.6 44 63.6
Gohir.A06G211700 Gossypium hirsutum HOM05D001439 ORTHO05D002726 2.2e-06 56.6 70 48.6
Lalb_Chr15g0089681 Lupinus albus HOM05D001439 ORTHO05D002726 2.2e-06 56.6 108 38.0
Nn1g06413 Nelumbo nucifera HOM05D001439 ORTHO05D002726 2.2e-06 56.6 76 47.4
Sabra04G0030600 Salix brachista HOM05D001439 ORTHO05D002726 2.2e-06 56.6 58 51.7
Sabra11G0039900 Salix brachista HOM05D001439 ORTHO05D002726 2.2e-06 56.6 58 55.2
Hund01014 Selenicereus undatus HOM05D001439 ORTHO05D002726 2.2e-06 56.6 70 40.0
ATR0730G134 Amborella trichopoda HOM05D001439 ORTHO05D002726 2.9e-06 56.2 71 47.9
CAN.G529.57 Capsicum annuum HOM05D001439 ORTHO05D002726 2.9e-06 56.2 47 59.6
Haze_06382 Corylus avellana HOM05D001439 ORTHO05D002726 2.9e-06 56.2 73 47.9
Glyma.13G175200 Glycine max HOM05D001439 ORTHO05D002726 2.9e-06 56.2 69 44.9
Nitab4.5_0005191g0050 Nicotiana tabacum HOM05D001439 ORTHO05D002726 2.9e-06 56.2 71 46.5
MSTRG.14322 Avicennia marina HOM05D001439 ORTHO05D002726 3.8e-06 55.8 65 47.7
Cfa000527 Carpinus fangiana HOM05D001439 ORTHO05D002726 3.8e-06 55.8 73 47.9
Potri.004G048675 Populus trichocarpa HOM05D001439 ORTHO05D002726 3.8e-06 55.8 62 51.6
PGR142G1802 Punica granatum HOM05D001439 ORTHO05D002726 3.8e-06 55.8 72 48.6
GSVIVG01021113001 Vitis vinifera HOM05D001439 ORTHO05D002726 3.8e-06 55.8 69 46.4
CANSAT64G0141 Cannabis sativa HOM05D001439 ORTHO05D002726 5.0e-06 55.5 55 52.7
Ca_00363_v3 Cicer arietinum L. HOM05D001439 ORTHO05D002726 5.0e-06 55.5 44 61.4
COL.COLO4_31415 Corchorus olitorius HOM05D001439 ORTHO05D002726 5.0e-06 55.5 70 45.7
DCAR_004044 Daucus carota HOM05D001439 ORTHO05D002726 5.0e-06 55.5 44 59.1
DCAR_028055 Daucus carota HOM05D001439 ORTHO05D002726 5.0e-06 55.5 71 42.3
Glyma.07G201200 Glycine max HOM05D001439 ORTHO05D002726 5.0e-06 55.5 69 44.9
Lalb_Chr16g0384011 Lupinus albus HOM05D001439 ORTHO05D002726 5.0e-06 55.5 71 49.3
Medtr2g014490 Medicago truncatula HOM05D001439 ORTHO05D002726 5.0e-06 55.5 44 61.4
SGA_v2.0_scaffold16G07637 Striga asiatica HOM05D001439 ORTHO05D002726 5.0e-06 55.5 61 50.8
arahy.Tifrunner.gnm1.ann1.1H2VR5 Arachis hypogaea HOM05D001439 ORTHO05D002726 6.5e-06 55.1 74 43.2
FAN25G1066 Fragaria x ananassa HOM05D001439 ORTHO05D002726 6.5e-06 55.1 54 51.9
SEGI_30380 Sequoiadendron giganteum HOM05D001439 ORTHO05D002726 6.5e-06 55.1 43 55.8
Atru.chr10.1798 Acer truncatum HOM05D001439 ORTHO05D002726 8.5e-06 54.7 70 47.1
Cc02_g13850 Coffea canephora HOM05D001439 ORTHO05D002726 8.5e-06 54.7 72 41.7
Solyc02g077660.3 Solanum lycopersicum HOM05D001439 ORTHO05D002726 8.5e-06 54.7 47 57.4
Sopen02g022560 Solanum pennellii HOM05D001439 ORTHO05D002726 8.5e-06 54.7 47 57.4


User provided reference genes

Program Settings