Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 2215.3 1117 100.0
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1939.1 1118 88.0
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1934.8 1117 88.2
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1722.2 1121 78.7
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1719.5 1123 78.5
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1698.7 1121 77.7
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1692.6 1122 77.7
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1577.4 1118 72.9
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 0.0e+00 1574.7 892 89.7
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 0.0e+00 1503.8 1018 74.5
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1369.4 1141 62.9
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1346.6 1124 61.8
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1345.9 1127 61.8
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1345.9 1151 61.4
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1344.7 1127 61.6
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1342.4 1127 61.6
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1338.9 1136 61.8
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1335.9 1124 61.7
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1332.8 1124 61.6
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1331.6 1124 61.6
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1326.6 1122 61.5
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1324.3 1131 61.0
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1323.1 1131 61.5
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1317.0 1132 61.2
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1312.0 1130 61.0
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1305.4 1131 62.1
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1304.3 1140 60.2
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1302.3 1151 59.4
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1293.9 1134 60.4
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1291.9 1134 60.2
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1288.5 1146 60.6
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1287.7 1132 60.2
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1286.9 1131 59.9
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1260.0 1134 59.3
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1256.1 1135 58.5
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1246.1 1130 57.7
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1245.7 1135 58.1
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1245.3 1135 58.2
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1236.9 1140 57.3
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1233.8 1138 57.4
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1233.0 1137 58.3
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1228.8 1131 57.9
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1228.8 1135 58.0
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1227.2 1137 57.5
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1226.5 1135 57.9
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1225.7 1138 57.5
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1221.5 1132 58.5
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1221.1 1136 57.4
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1219.9 1172 56.7
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1211.4 1130 57.0
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1198.3 1143 55.5
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1196.0 1134 56.9
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1182.2 1138 55.4
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1178.7 1138 55.3
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1176.8 1140 54.6
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1169.5 1138 54.9
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1166.4 1086 56.4
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1165.6 1139 54.2
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 0.0e+00 1151.0 1145 54.7
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1149.8 1085 56.8
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 0.0e+00 1147.5 1129 55.4
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1147.1 1138 53.7
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1139.0 1132 54.3
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1134.4 1146 53.8
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1126.3 1137 54.9
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 0.0e+00 1119.8 1147 54.0
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1118.2 1144 53.1
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 0.0e+00 1115.5 1146 53.2
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1112.4 1140 52.7
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 0.0e+00 1109.7 1141 52.8
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 1105.5 1136 52.4
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1102.8 1142 53.3
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1101.7 1134 52.3
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 1099.7 1134 52.3
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 0.0e+00 1097.4 1133 52.3
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 0.0e+00 1096.3 1131 52.7
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1092.0 1133 52.1
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 0.0e+00 1091.3 1134 53.4
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1090.5 1134 52.6
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1090.1 1136 52.1
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 0.0e+00 1087.8 1130 52.2
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1085.5 1142 52.4
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1084.3 1135 52.0
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 0.0e+00 1083.9 1135 52.0
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 2.7e-307 1058.9 1147 50.9
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 7.8e-307 1057.4 1029 54.3
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 3.9e-306 1055.0 1173 49.7
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 3.6e-304 1048.5 1108 52.0
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 9.0e-295 1017.3 1128 50.5
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-272 943.3 1150 47.0
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 7.1e-268 927.9 554 84.1
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 3.1e-263 912.5 1123 47.6
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 1.9e-244 850.1 754 56.8
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 1.6e-243 847.0 640 66.1
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 3.1e-239 832.8 650 65.1
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 1.8e-234 817.0 1136 43.4
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 8.3e-232 808.1 1140 43.3
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 2.2e-216 756.9 645 60.6
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 2.8e-216 756.5 1207 38.4
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 5.6e-212 742.3 641 59.3
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 2.0e-206 723.8 1149 38.8
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 7.5e-201 705.3 642 57.8
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 6.4e-200 702.2 1227 36.8
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 6.2e-195 685.6 558 62.2
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 4.4e-193 679.5 607 59.0
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 4.2e-167 593.2 714 46.8
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 2.5e-164 583.9 642 48.9
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 2.7e-150 537.3 463 61.6
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 2.5e-148 530.8 485 57.5
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 2.0e-140 504.6 478 56.5
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 8.2e-139 499.2 513 53.4
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 1.3e-80 305.8 1592 24.1
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 8.9e-77 293.1 523 35.9
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 2.4e-74 285.0 739 32.7
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 8.9e-69 266.5 288 51.0
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-65 256.1 559 32.9
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 6.0e-65 253.8 549 31.7
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 4.9e-59 234.2 379 40.9
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-57 229.6 488 33.2
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 2.9e-51 208.4 560 29.6
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-44 185.3 672 26.6
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-44 185.3 672 26.6
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 2.7e-41 175.3 507 29.2
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 1.5e-39 169.5 229 45.0
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 4.8e-38 164.5 208 45.7
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 3.1e-37 161.8 372 33.3
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 1.0e-35 156.8 248 40.3
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 3.8e-35 154.8 168 48.8
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 1.5e-31 142.9 83 83.1
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 5.7e-31 141.0 210 41.0
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 8.2e-30 137.1 195 44.6
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 4.1e-29 134.8 148 50.0
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 1.7e-22 112.8 125 45.6
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 1.0e-19 103.6 119 49.6
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-18 99.4 153 36.6
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 5.2e-16 91.3 243 30.5
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 5.2e-16 91.3 243 30.5
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 1.3e-14 86.7 50 76.0
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 3.1e-13 82.0 137 36.5
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-12 79.7 51 72.5
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 1.0e-11 77.0 59 57.6
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 7.2e-10 70.9 113 39.8
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 3.6e-09 68.6 149 34.2
SHI47080 Sapria himalayana HOM05D004911 ORTHO05D005930 5.7e-07 61.2 83 38.6
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 1.3e-06 60.1 65 55.4
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 1.3e-06 60.1 83 34.9


User provided reference genes

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