Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 2.6e-183 645.2 318 100.0
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 2.5e-133 479.2 289 79.9
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 2.1e-132 476.1 290 81.7
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 2.0e-114 416.4 285 74.7
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 5.2e-107 391.7 295 65.8
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 6.4e-105 384.8 291 64.3
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 8.4e-105 384.4 295 63.7
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 1.1e-104 384.0 295 63.7
Medtr4g035250 Medicago truncatula HOM05D007837 ORTHO05D009965 1.2e-103 380.6 253 77.9
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 2.3e-102 376.3 294 62.9
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 6.6e-102 374.8 249 75.9
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 1.1e-101 374.0 302 60.6
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 1.5e-101 373.6 293 61.8
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 5.6e-101 371.7 304 60.5
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.6e-100 370.2 291 61.2
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 3.6e-100 369.0 294 59.5
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 3.6e-100 369.0 304 60.9
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 3.6e-100 369.0 293 60.8
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 4.8e-100 368.6 291 60.8
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 8.1e-100 367.9 288 60.8
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 1.4e-99 367.1 299 61.5
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 1.8e-99 366.7 293 60.4
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 6.9e-99 364.8 294 60.9
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 9.0e-99 364.4 293 60.8
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 1.5e-98 363.6 291 60.5
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.6e-98 362.8 303 59.4
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 7.6e-98 361.3 288 61.5
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 2.4e-96 356.3 280 61.1
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 1.2e-95 354.0 292 59.9
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 6.0e-95 351.7 292 58.6
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 1.0e-94 350.9 293 59.4
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.3e-94 350.5 292 59.2
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 6.7e-94 348.2 289 60.9
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 1.5e-93 347.1 216 76.4
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 4.3e-93 345.5 294 56.8
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 9.6e-93 344.4 300 55.3
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 2.8e-92 342.8 249 65.5
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 8.1e-92 341.3 302 56.6
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 1.1e-91 340.9 292 60.6
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 1.4e-91 340.5 294 56.8
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 1.8e-91 340.1 249 65.1
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 1.5e-90 337.0 287 59.2
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 2.0e-90 336.7 293 59.4
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 5.8e-90 335.1 292 58.9
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.9e-89 332.8 290 56.2
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.9e-89 332.8 290 56.2
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 5.5e-88 328.6 248 61.7
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 5.1e-86 322.0 248 60.9
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.5e-85 319.7 268 60.1
QL05p065337 Quercus lobata HOM05D007837 ORTHO05D009965 5.6e-85 318.5 296 56.1
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 7.4e-85 318.2 252 65.5
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 5.8e-82 308.5 247 59.5
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 1.3e-81 307.4 247 59.1
MBI18_g28215_MAGBIO Magnolia biondii HOM05D007837 ORTHO05D009965 5.5e-80 302.0 294 52.4
Nitab4.5_0011721g0030 Nicotiana tabacum HOM05D007837 ORTHO05D009965 9.3e-80 301.2 286 51.7
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 1.6e-79 300.4 296 49.3
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 2.1e-79 300.1 247 58.3
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 2.8e-76 289.7 247 57.1
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 1.5e-69 267.3 236 59.3
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 9.7e-69 264.6 213 62.0
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 1.5e-61 240.7 298 43.0
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 3.7e-52 209.5 303 39.6
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 1.7e-49 200.7 286 36.4
TPR.G1949 Trifolium pratense HOM05D007837 ORTHO05D009965 6.3e-44 182.2 94 89.4
TPR.G10794 Trifolium pratense HOM05D007837 ORTHO05D009965 9.4e-40 168.3 90 90.0
Haze_05985 Corylus avellana HOM05D007837 ORTHO05D009965 1.8e-38 164.1 131 61.8
Hma1.2p1_0410F.1_g147010 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 2.6e-29 133.7 104 61.5
Sabra11G0145700 Salix brachista HOM05D007837 ORTHO05D009965 4.3e-24 116.3 124 46.0
TAR633G0058 Trochodendron aralioides HOM05D007837 ORTHO05D009965 6.1e-23 112.5 97 54.6
TAR086G0001 Trochodendron aralioides HOM05D007837 ORTHO05D009965 4.3e-16 89.7 60 68.3
Glyma.03G069100 Glycine max HOM05D007837 ORTHO05D009965 1.6e-15 87.8 109 49.5
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.0e-14 83.2 231 29.9
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 8.9e-14 82.0 266 25.9
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 2.0e-13 80.9 274 25.2
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 3.4e-13 80.1 280 26.1
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 4.4e-13 79.7 251 27.5
SMO263G0007 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 5.8e-13 79.3 206 26.7
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 7.5e-13 79.0 63 58.7
MCO10G143 Micromonas commoda HOM05D007837 ORTHO05D009965 9.8e-13 78.6 296 23.6
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.3e-12 78.2 274 24.8
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 1.3e-12 78.2 63 58.7
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.9e-12 77.0 247 27.1
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.9e-12 77.0 247 27.1
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 2.9e-12 77.0 222 25.2
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.9e-12 76.3 274 24.5
PRCOL_00005542 Prasinoderma coloniale HOM05D007837 ORTHO05D009965 4.9e-12 76.3 300 25.7
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 6.4e-12 75.9 252 27.8
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 6.4e-12 75.9 274 24.5
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 6.4e-12 75.9 274 24.5
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 6.4e-12 75.9 274 24.5
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 6.4e-12 75.9 243 27.2
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 6.4e-12 75.9 199 28.1
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 8.3e-12 75.5 195 28.2
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 1.4e-11 74.7 240 25.8
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.4e-11 74.7 245 26.9
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 1.9e-11 74.3 268 25.7
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 2.4e-11 73.9 263 25.1
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 2.4e-11 73.9 267 22.1
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 2.4e-11 73.9 262 24.4
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 4.1e-11 73.2 259 24.7
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.1e-11 73.2 223 25.6
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 5.4e-11 72.8 265 23.8
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 9.2e-11 72.0 255 27.1
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 1.6e-10 71.2 255 25.9
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 1.6e-10 71.2 273 26.4
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 2.7e-10 70.5 226 24.3
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 3.5e-10 70.1 241 25.3
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 3.5e-10 70.1 215 23.3
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 4.6e-10 69.7 253 25.7
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 4.6e-10 69.7 199 27.6
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 4.6e-10 69.7 228 27.2
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 6.0e-10 69.3 246 25.6
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 6.0e-10 69.3 254 25.2
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 6.0e-10 69.3 242 24.4
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 7.8e-10 68.9 235 24.3
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 1.0e-09 68.6 259 23.9
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 1.0e-09 68.6 195 26.7
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 1.3e-09 68.2 264 25.4
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 1.7e-09 67.8 256 25.4
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 2.3e-09 67.4 188 28.7
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 3.0e-09 67.0 267 25.8
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 3.0e-09 67.0 256 25.4
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 3.9e-09 66.6 263 24.3
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 3.9e-09 66.6 241 24.1
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 3.9e-09 66.6 220 26.8
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 5.1e-09 66.2 237 27.0
Medtr4g035220 Medicago truncatula HOM05D007837 ORTHO05D009965 6.6e-09 65.9 37 83.8
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 8.6e-09 65.5 268 24.6
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 1.1e-08 65.1 271 25.1
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.9e-08 64.3 232 25.4
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 1.9e-08 64.3 248 27.0
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 7.3e-08 62.4 157 26.8
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 7.3e-08 62.4 189 26.5
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 2.1e-07 60.8 247 27.1
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 2.8e-07 60.5 248 24.6
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 2.8e-07 60.5 263 25.1
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 2.8e-07 60.5 263 25.1
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 6.2e-07 59.3 169 27.8
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 6.2e-07 59.3 235 22.6
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 8.1e-07 58.9 230 25.2
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.1e-06 58.5 204 27.0


User provided reference genes

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