Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 6.9e-125 450.7 229 100.0
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 1.1e-114 416.8 229 93.0
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.2e-100 370.2 231 83.1
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 2.0e-100 369.4 233 82.4
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 4.2e-98 361.7 247 78.1
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.8e-96 356.3 234 78.6
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 9.7e-95 350.5 219 82.2
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 1.3e-94 350.1 241 75.5
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 2.8e-94 349.0 235 78.7
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 1.7e-91 339.7 235 75.7
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 2.2e-91 339.3 234 79.1
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 5.7e-87 324.7 235 74.0
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 1.2e-84 317.0 235 69.4
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 7.2e-82 307.8 223 73.5
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 4.4e-79 298.5 184 79.3
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.7e-78 296.6 166 88.0
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 3.7e-78 295.4 226 69.9
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 2.4e-77 292.7 229 68.6
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 5.3e-77 291.6 180 81.1
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 7.0e-77 291.2 190 77.9
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.0e-76 289.7 224 69.6
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 4.5e-76 288.5 232 65.9
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 5.9e-76 288.1 171 81.9
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 5.9e-76 288.1 167 87.4
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.3e-75 287.0 171 82.5
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.7e-75 286.6 189 79.4
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.7e-75 286.6 218 67.4
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 2.2e-75 286.2 231 64.5
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 2.9e-75 285.8 224 68.3
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.9e-75 285.8 224 68.3
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 5.0e-75 285.0 163 84.7
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.0e-75 285.0 165 86.1
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.0e-75 285.0 165 86.1
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 5.0e-75 285.0 165 86.1
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 5.0e-75 285.0 237 64.6
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 5.0e-75 285.0 231 64.9
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 1.1e-74 283.9 165 85.5
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.1e-74 283.9 189 76.2
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.4e-74 283.5 169 83.4
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.9e-74 283.1 231 64.1
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 2.5e-74 282.7 194 75.8
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.5e-74 282.7 164 85.4
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.2e-74 282.3 190 77.4
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.2e-74 282.3 189 77.2
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.2e-74 282.3 189 77.2
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 3.2e-74 282.3 164 84.8
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 3.2e-74 282.3 166 83.7
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 4.2e-74 282.0 171 80.7
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 4.2e-74 282.0 165 82.4
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 5.5e-74 281.6 232 64.2
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 5.5e-74 281.6 189 75.7
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 9.4e-74 280.8 168 82.7
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 2.7e-73 279.3 171 79.5
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 2.7e-73 279.3 186 75.8
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 3.6e-73 278.9 161 85.7
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.6e-73 278.9 194 72.2
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.7e-73 278.5 168 82.1
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 6.1e-73 278.1 192 75.0
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.0e-72 277.3 197 72.1
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 2.3e-72 276.2 231 63.2
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 2.3e-72 276.2 188 72.9
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 3.0e-72 275.8 161 81.4
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 3.0e-72 275.8 160 82.5
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 3.0e-72 275.8 165 83.6
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 6.7e-72 274.6 161 80.1
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 6.7e-72 274.6 161 80.1
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 6.7e-72 274.6 161 80.1
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.5e-71 273.5 194 71.1
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.5e-71 273.5 202 68.8
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.5e-71 273.5 161 80.7
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 2.0e-71 273.1 171 78.4
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 2.0e-71 273.1 171 78.4
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 2.0e-71 273.1 206 68.9
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 2.6e-71 272.7 162 80.9
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 3.3e-71 272.3 161 80.1
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 3.3e-71 272.3 160 80.0
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 4.4e-71 271.9 171 77.8
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 7.4e-71 271.2 234 62.8
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 9.7e-71 270.8 157 84.1
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 3.7e-70 268.9 176 76.1
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.1e-69 267.3 185 71.9
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.8e-69 266.5 187 74.3
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 4.1e-69 265.4 158 82.9
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.0e-68 263.1 167 78.4
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 4.5e-68 261.9 240 60.0
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 4.5e-68 261.9 204 68.1
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 7.7e-68 261.2 173 72.3
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 1.0e-67 260.8 169 75.7
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.7e-67 260.0 158 81.0
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.2e-67 259.6 167 77.2
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 2.2e-67 259.6 180 75.6
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 5.0e-67 258.5 192 69.8
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 5.0e-67 258.5 189 68.3
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 8.5e-67 257.7 188 71.8
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 1.1e-66 257.3 233 60.1
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.5e-66 256.9 229 62.0
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 2.5e-66 256.1 164 78.0
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 3.2e-66 255.8 197 66.0
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 4.2e-66 255.4 190 67.9
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 7.2e-66 254.6 164 75.0
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 7.2e-66 254.6 164 75.0
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 9.4e-66 254.2 139 87.1
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 9.4e-66 254.2 166 72.9
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 9.4e-66 254.2 221 59.7
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.2e-65 253.8 230 60.4
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 2.1e-65 253.1 210 61.9
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 2.7e-65 252.7 151 77.5
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 2.7e-65 252.7 164 75.0
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 4.7e-65 251.9 171 71.9
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 6.1e-65 251.5 169 72.2
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.4e-64 250.4 256 56.2
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 4.0e-64 248.8 168 78.0
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 4.0e-64 248.8 146 82.9
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 5.2e-64 248.4 159 76.7
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 5.2e-64 248.4 158 82.3
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 8.8e-64 247.7 218 62.4
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 7.5e-63 244.6 166 70.5
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 8.3e-62 241.1 164 73.2
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 2.4e-61 239.6 162 73.5
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 3.1e-61 239.2 178 69.7
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 5.3e-61 238.4 133 87.2
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.0e-60 236.5 211 61.1
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 4.5e-60 235.3 169 71.0
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.3e-59 233.8 216 57.4
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 8.5e-59 231.1 139 77.0
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.9e-58 229.9 204 60.3
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 5.5e-58 228.4 139 80.6
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 2.7e-57 226.1 127 85.8
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 6.1e-57 224.9 127 83.5
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 6.1e-57 224.9 157 66.9
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 1.4e-56 223.8 132 80.3
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 3.0e-56 222.6 167 67.1
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 2.8e-54 216.1 186 64.5
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.0e-49 198.0 134 70.9
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 1.0e-48 197.6 141 66.0
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 1.8e-48 196.8 168 63.7
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 1.2e-47 194.1 159 63.5
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 1.5e-47 193.7 188 58.5
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 5.4e-45 185.3 165 58.8
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 9.2e-45 184.5 116 78.4
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 2.0e-44 183.3 198 49.0
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 3.9e-43 179.1 106 83.0
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 1.5e-42 177.2 97 84.5
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 3.1e-40 169.5 97 81.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.0e-36 156.8 148 52.7
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.5e-36 156.0 118 66.1
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 7.3e-34 148.3 77 93.5
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 4.7e-33 145.6 132 54.5
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 6.8e-32 141.7 170 51.8
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 2.0e-31 140.2 128 59.4
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 2.6e-31 139.8 74 90.5
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.9e-30 135.6 161 52.2
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 6.4e-30 135.2 77 84.4
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.1e-29 132.5 126 59.5
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 1.3e-27 127.5 86 73.3
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 4.7e-25 119.0 80 73.8
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 4.0e-24 115.9 100 59.0
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.7e-22 110.5 98 57.1
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 9.2e-21 104.8 156 40.4
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.6e-20 104.0 72 75.0
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 1.2e-17 94.4 47 91.5
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 1.8e-16 90.5 70 60.0
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-14 83.6 99 53.5
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 2.9e-14 83.2 52 76.9
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 6.4e-14 82.0 42 90.5
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 8.4e-14 81.6 42 88.1
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 1.4e-13 80.9 125 44.0
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 9.6e-10 68.2 37 81.1
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 4.0e-08 62.8 32 93.8
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 6.9e-08 62.0 61 57.4
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 6.9e-08 62.0 96 37.5
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 1.7e-06 57.4 40 75.0
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 1.7e-06 57.4 40 75.0
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 2.9e-06 56.6 127 35.4
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 6.4e-06 55.5 32 78.1


User provided reference genes

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