Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 5.9e-39 163.7 81 100.0
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 5.9e-39 163.7 81 100.0
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 9.8e-34 146.4 81 85.2
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 2.2e-33 145.2 81 84.0
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.1e-32 142.9 81 84.0
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.6e-31 139.0 81 82.7
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 3.5e-31 137.9 81 80.2
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 3.5e-31 137.9 81 80.2
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 5.9e-31 137.1 81 81.5
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 80.2
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 2.9e-30 134.8 81 77.8
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 6.6e-30 133.7 81 76.5
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 1.9e-29 132.1 79 81.0
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 2.9e-25 118.2 81 66.7
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 2.9e-25 118.2 81 65.4
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 65.4
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 63.0
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 65.4
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 3.7e-25 117.9 80 66.2
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 66.7
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 66.7
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 64.2
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 63.0
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 65.4
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 2.4e-24 115.2 80 65.0
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 5.4e-24 114.0 81 65.4
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 5.4e-24 114.0 81 61.7
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 9.2e-24 113.2 81 64.2
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 61.7
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 64.2
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 64.2
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 64.2
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 64.2
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 64.2
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 65.4
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 65.4
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 2.7e-23 111.7 81 60.5
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 4.6e-23 110.9 81 61.7
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 4.6e-23 110.9 81 61.7
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 4.6e-23 110.9 81 64.2
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 5.9e-23 110.5 81 61.7
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 7.8e-23 110.2 81 61.7
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 7.8e-23 110.2 81 64.2
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 1.0e-22 109.8 81 63.0
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 1.0e-22 109.8 81 63.0
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 1.0e-22 109.8 80 61.2
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 1.0e-22 109.8 81 59.3
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 1.0e-22 109.8 81 59.3
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 1.3e-22 109.4 81 60.5
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 1.7e-22 109.0 81 61.7
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 2.3e-22 108.6 81 60.5
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 2.3e-22 108.6 81 58.0
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 3.9e-22 107.8 81 59.3
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 58.0
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 63.0
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 63.0
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 6.6e-22 107.1 81 58.0
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 8.6e-22 106.7 81 59.3
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 8.6e-22 106.7 81 63.0
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 8.6e-22 106.7 81 63.0
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 8.6e-22 106.7 81 63.0
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 8.6e-22 106.7 81 63.0
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 8.6e-22 106.7 81 63.0
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 8.6e-22 106.7 81 58.0
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 8.6e-22 106.7 81 59.3
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 3.3e-21 104.8 81 59.3
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 3.3e-21 104.8 81 59.3
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 9.5e-21 103.2 81 56.8
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 9.5e-21 103.2 82 59.8
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 9.5e-21 103.2 82 61.0
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 1.2e-20 102.8 81 58.0
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 1.2e-20 102.8 81 58.0
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 1.2e-20 102.8 82 58.5
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 2.1e-20 102.1 81 58.0
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 2.1e-20 102.1 81 54.3
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 2.8e-20 101.7 81 54.3
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 3.6e-20 101.3 81 56.8
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 4.7e-20 100.9 81 54.3
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 1.1e-19 99.8 81 53.1
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 1.8e-19 99.0 81 56.8
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 5.2e-19 97.4 81 56.8
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 8.9e-19 96.7 79 55.7
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 1.5e-18 95.9 81 55.6
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 2.0e-18 95.5 81 55.6
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 2.0e-18 95.5 81 55.6
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 2.0e-18 95.5 81 55.6
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 2.0e-18 95.5 81 55.6
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 2.0e-18 95.5 81 55.6
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 6.4e-17 90.5 81 54.3
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 2.7e-15 85.1 78 47.4
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 1.7e-14 82.4 81 46.9
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 3.9e-14 81.3 59 69.5
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 3.9e-14 81.3 76 47.4
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 6.6e-14 80.5 72 47.2
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 1.1e-13 79.7 59 59.3
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 1.5e-13 79.3 79 44.3
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 4.3e-13 77.8 59 66.1
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 4.3e-13 77.8 79 44.3
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 9.5e-13 76.6 64 59.4
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 4.7e-12 74.3 57 52.6
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 6.2e-12 73.9 57 52.6
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 5.8e-10 67.4 57 52.6
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 5.8e-10 67.4 80 41.2
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 9.9e-10 66.6 80 42.5
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 1.3e-09 66.2 66 40.9
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 2.9e-09 65.1 77 42.9
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 6.4e-09 63.9 45 62.2
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 6.4e-09 63.9 45 62.2
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 2.3e-06 55.5 37 64.9


User provided reference genes

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