Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 1.2e-237 826.2 460 100.0
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.4e-217 759.6 459 93.0
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 9.0e-217 756.9 458 92.6
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 5.8e-216 754.2 455 91.9
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 3.2e-206 721.8 460 88.3
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 3.2e-206 721.8 462 87.2
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 5.5e-206 721.1 460 87.8
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 2.1e-205 719.2 460 87.6
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 6.0e-205 717.6 460 87.4
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 2.1e-202 709.1 454 87.2
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 2.8e-194 682.2 460 78.5
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 2.8e-194 682.2 460 78.5
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 4.1e-193 678.3 459 81.9
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 2.6e-192 675.6 459 83.4
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 9.7e-187 657.1 459 82.4
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 1.3e-186 656.8 459 81.5
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 6.3e-186 654.4 459 80.2
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 6.9e-185 651.0 459 79.7
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.2e-184 650.2 460 78.0
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 1.2e-184 650.2 460 78.3
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 2.0e-184 649.4 459 81.0
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 4.5e-184 648.3 459 79.3
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.2e-183 646.0 460 77.2
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 3.8e-183 645.2 460 77.8
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.4e-182 643.3 459 79.3
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.2e-181 640.2 459 76.7
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 4.7e-181 638.3 460 79.6
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 1.8e-180 636.3 459 79.5
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.7e-178 629.8 460 78.0
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 8.2e-178 627.5 460 77.6
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.1e-177 627.1 460 77.4
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.1e-177 627.1 462 77.1
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 2.4e-177 625.9 461 72.5
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 3.1e-177 625.5 438 81.7
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 7.0e-177 624.4 461 77.9
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 5.9e-176 621.3 461 76.6
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 7.7e-176 620.9 459 76.7
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 1.0e-175 620.5 503 67.8
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 8.5e-175 617.5 459 77.1
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.1e-174 617.1 461 77.0
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 1.1e-174 617.1 459 76.3
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 7.2e-174 614.4 459 75.4
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 9.4e-174 614.0 461 75.7
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 9.4e-174 614.0 459 76.3
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.6e-173 613.2 461 76.6
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 2.1e-173 612.8 460 76.5
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 2.7e-173 612.5 464 76.1
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 8.0e-173 610.9 462 76.0
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 8.0e-173 610.9 459 75.6
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.0e-172 610.5 460 76.5
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 1.8e-172 609.8 459 75.8
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 5.2e-172 608.2 460 75.2
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 1.1e-171 607.1 459 73.6
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.5e-171 606.7 459 74.1
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 2.0e-171 606.3 459 75.4
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 7.5e-171 604.4 460 75.9
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 1.3e-170 603.6 460 75.7
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.7e-170 603.2 459 73.2
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 2.2e-170 602.8 461 74.2
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 2.2e-170 602.8 460 74.8
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.8e-170 601.7 459 72.8
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 4.8e-170 601.7 460 75.4
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 8.2e-170 600.9 461 75.1
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 4.1e-169 598.6 465 75.5
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 7.0e-169 597.8 465 75.1
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.2e-168 597.0 460 73.3
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.0e-168 596.3 458 72.5
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 2.7e-168 595.9 460 73.5
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 4.5e-168 595.1 461 75.1
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 4.5e-168 595.1 461 75.3
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 2.5e-166 589.3 460 72.0
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 1.6e-165 586.6 460 73.7
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 2.1e-165 586.3 459 73.4
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 3.4e-163 578.9 490 69.8
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 4.4e-163 578.6 459 72.8
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.7e-159 566.6 474 69.0
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 2.2e-159 566.2 481 68.0
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 4.2e-158 562.0 460 72.2
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 5.5e-158 561.6 463 65.2
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.5e-158 561.6 459 71.7
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 9.5e-158 560.8 459 71.7
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.6e-157 560.1 459 70.6
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.7e-157 558.5 548 62.4
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 8.0e-157 557.8 457 72.0
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 1.4e-156 557.0 462 70.3
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 8.8e-156 554.3 461 68.8
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 2.0e-155 553.1 457 71.6
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 2.6e-155 552.7 457 71.6
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 3.4e-155 552.4 457 71.1
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 9.8e-155 550.8 467 69.6
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 9.8e-155 550.8 459 70.6
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 1.4e-153 547.0 460 64.8
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 9.2e-153 544.3 387 71.6
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 3.5e-152 542.3 459 69.7
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 1.0e-151 540.8 389 71.7
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.7e-151 540.0 459 69.7
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 1.6e-149 533.5 387 70.5
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 4.7e-149 531.9 460 67.6
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.0e-148 530.8 459 68.2
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 4.0e-148 528.9 461 60.7
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 1.5e-147 526.9 389 71.0
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.8e-145 520.0 461 67.7
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 4.6e-144 515.4 460 66.1
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 4.6e-144 515.4 379 78.1
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 1.3e-143 513.8 388 68.6
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 2.3e-143 513.1 461 65.5
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 5.4e-137 491.9 497 62.2
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 6.6e-135 485.0 460 59.3
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.1e-134 484.2 467 63.2
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 7.3e-134 481.5 382 73.8
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.8e-132 476.9 459 64.9
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 1.8e-132 476.9 460 61.3
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 9.9e-115 417.9 461 55.5
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.6e-112 409.1 462 53.2
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 3.0e-111 406.4 364 60.2
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 3.3e-102 376.3 300 65.3
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 4.9e-98 362.5 460 48.7
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 1.8e-92 344.0 316 62.0
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 6.1e-80 302.4 290 67.6
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.2e-66 257.3 393 40.7
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 2.5e-65 253.8 464 41.4
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.2e-57 226.5 242 53.7
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 3.7e-53 213.4 189 64.6
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 8.2e-53 212.2 134 80.6
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 3.2e-49 200.3 511 37.2
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.1e-44 185.3 123 74.8
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 1.2e-43 181.8 399 30.8
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 3.5e-43 180.3 122 74.6
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 4.5e-43 179.9 163 61.3
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 5.9e-43 179.5 94 95.7
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 2.5e-41 174.1 507 34.5
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 9.8e-38 162.2 220 47.7
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 7.8e-35 152.5 121 67.8
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.1e-32 144.4 154 52.6
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 5.8e-22 109.8 115 59.1
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 2.9e-21 107.5 113 57.5
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 4.6e-19 100.1 98 83.7
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 2.3e-18 97.8 120 53.3
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 1.9e-17 94.7 68 72.1
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 5.2e-15 86.7 55 80.0
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 6.8e-15 86.3 60 73.3
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 1.7e-13 81.6 122 42.6
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 1.7e-13 81.6 65 64.6
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 2.9e-13 80.9 47 87.2
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 7.1e-12 76.3 62 66.1
Psat1g145560 Pisum sativum HOM05D005230 ORTHO05D006506 9.2e-12 75.9 104 48.1
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 6.2e-08 63.2 50 74.0
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.4e-07 62.0 97 42.3
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 4.0e-07 60.5 411 19.5
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 1.5e-06 58.5 257 23.7


User provided reference genes

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