Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 8.3e-80 300.4 145 100.0
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 1.8e-71 272.7 145 88.3
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 5.9e-70 267.7 144 86.1
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 2.7e-62 242.3 137 82.5
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 2.2e-56 222.6 128 81.2
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 4.1e-55 218.4 129 78.3
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 3.0e-53 212.2 145 70.3
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 1.2e-51 206.8 124 75.8
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 2.8e-51 205.7 124 76.6
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 2.8e-51 205.7 124 76.6
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 5.1e-45 184.9 122 68.9
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 3.6e-43 178.7 123 67.5
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 8.1e-43 177.6 125 66.4
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 1.1e-42 177.2 124 66.9
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 1.4e-42 176.8 123 66.7
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 5.2e-42 174.9 123 66.7
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 1.2e-41 173.7 122 63.9
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 4.4e-41 171.8 123 64.2
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 9.9e-41 170.6 122 62.3
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 1.3e-40 170.2 122 62.3
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 1.7e-40 169.9 123 64.2
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 2.2e-40 169.5 123 63.4
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 2.2e-40 169.5 125 63.2
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 2.2e-40 169.5 123 63.4
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 3.8e-40 168.7 153 54.9
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 4.9e-40 168.3 122 65.6
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 4.9e-40 168.3 123 62.6
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 4.9e-40 168.3 123 62.6
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 4.9e-40 168.3 124 63.7
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 1.1e-39 167.2 126 61.9
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 1.1e-39 167.2 122 59.8
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 1.9e-39 166.4 123 61.8
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 1.9e-39 166.4 125 60.8
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 1.9e-39 166.4 125 60.0
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 2.4e-39 166.0 125 57.6
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 2.4e-39 166.0 124 59.7
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 3.2e-39 165.6 123 60.2
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 3.2e-39 165.6 123 61.8
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 3.2e-39 165.6 123 61.8
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 3.2e-39 165.6 123 60.2
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 3.2e-39 165.6 122 62.3
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 3.2e-39 165.6 122 62.3
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 3.2e-39 165.6 125 62.4
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 4.1e-39 165.2 122 61.5
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 4.1e-39 165.2 115 66.1
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 4.1e-39 165.2 124 61.3
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 5.4e-39 164.9 123 61.8
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 9.2e-39 164.1 126 58.7
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 1.6e-38 163.3 122 58.2
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 2.7e-38 162.5 122 62.3
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 2.7e-38 162.5 123 61.0
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 7.8e-38 161.0 125 56.8
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 1.0e-37 160.6 125 58.4
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 1.3e-37 160.2 122 57.4
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 2.3e-37 159.5 122 60.7
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 2.3e-37 159.5 123 61.8
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 3.0e-37 159.1 141 55.3
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 3.0e-37 159.1 123 61.8
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 3.0e-37 159.1 123 61.8
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 3.9e-37 158.7 123 57.7
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 8.6e-37 157.5 123 59.3
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 8.6e-37 157.5 123 61.8
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 8.6e-37 157.5 123 61.0
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 1.9e-36 156.4 124 59.7
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 4.3e-36 155.2 123 58.5
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 7.3e-36 154.5 122 62.3
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 7.3e-36 154.5 122 59.8
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 9.6e-36 154.1 122 58.2
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.6e-35 153.3 125 53.6
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 2.1e-35 152.9 123 57.7
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 3.6e-35 152.1 125 52.8
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.6e-35 152.1 125 52.8
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.6e-35 152.1 125 52.8
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.6e-35 152.1 125 52.8
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 2.4e-34 149.4 112 62.5
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 2.4e-34 149.4 122 55.7
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 5.2e-34 148.3 123 53.7
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 1.2e-33 147.1 123 56.1
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 3.4e-33 145.6 122 51.6
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 3.4e-33 145.6 122 51.6
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 4.4e-33 145.2 127 55.1
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 4.4e-33 145.2 122 51.6
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 5.8e-33 144.8 122 54.9
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 1.4e-31 140.2 143 49.7
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 2.4e-31 139.4 125 53.6
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 3.5e-30 135.6 125 52.0
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 2.5e-28 129.4 125 47.2
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 2.5e-28 129.4 104 60.6
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 5.8e-25 118.2 76 73.7
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 2.9e-24 115.9 88 64.8
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 1.6e-22 110.2 104 52.9
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 1.3e-21 107.1 122 37.7
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 1.8e-21 106.7 80 60.0
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 3.9e-21 105.5 145 37.9
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 1.3e-19 100.5 107 43.0
Psat2g000040 Pisum sativum HOM05D000001 ORTHO05D025617 3.6e-19 99.0 49 100.0
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 5.3e-18 95.1 122 36.9
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 5.8e-17 91.7 120 43.3
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 5.8e-17 91.7 126 38.1
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 2.4e-15 86.3 122 39.3
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 3.9e-13 79.0 122 34.4
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 1.1e-12 77.4 62 58.1
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 1.4e-10 70.5 80 42.5
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 2.4e-10 69.7 45 64.4
arahy.Tifrunner.gnm1.ann1.IN0C4L Arachis hypogaea HOM05D006665 ORTHO05D012122 1.1e-07 60.8 61 55.7


User provided reference genes

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