Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 1.9e-50 202.2 101 100.0
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 6.9e-37 157.1 102 80.4
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 1.0e-35 153.3 102 78.4
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 8.4e-35 150.2 101 77.2
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 1.5e-28 129.4 101 66.3
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 1.8e-24 115.9 102 62.7
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 5.1e-24 114.4 101 61.4
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 6.7e-24 114.0 101 63.4
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 9.7e-23 110.2 101 58.4
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 2.2e-22 109.0 102 62.7
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 2.8e-22 108.6 101 57.4
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 3.7e-22 108.2 101 58.4
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 8.2e-22 107.1 102 59.8
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 1.1e-21 106.7 100 55.0
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 1.8e-21 105.9 96 56.2
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 6.9e-21 104.0 97 52.6
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 9.1e-21 103.6 102 56.9
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 2.6e-20 102.1 102 54.9
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 1.7e-19 99.4 102 54.9
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.2e-19 99.0 102 55.9
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 3.8e-19 98.2 103 53.4
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.0e-19 97.8 102 54.9
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.1e-18 96.7 103 51.5
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.1e-18 96.7 94 53.2
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 1.1e-18 96.7 102 54.9
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.4e-18 96.3 102 53.9
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.2e-18 95.1 102 54.9
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 4.2e-18 94.7 101 50.5
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 7.2e-18 94.0 80 60.0
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 9.4e-18 93.6 101 49.5
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.2e-17 93.2 102 56.9
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 2.7e-17 92.0 95 53.7
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 3.6e-17 91.7 101 51.5
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 3.6e-17 91.7 101 49.5
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 3.6e-17 91.7 101 50.5
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.6e-17 91.7 101 50.5
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 4.7e-17 91.3 102 50.0
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 4.7e-17 91.3 102 52.9
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 4.7e-17 91.3 104 52.9
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 6.1e-17 90.9 106 52.8
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 7.9e-17 90.5 98 50.0
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 1.0e-16 90.1 103 51.5
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 1.0e-16 90.1 103 51.5
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.8e-16 89.4 101 47.5
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 2.3e-16 89.0 100 46.0
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.3e-16 89.0 108 49.1
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 5.1e-16 87.8 102 50.0
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 6.7e-16 87.4 102 47.1
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 8.8e-16 87.0 98 46.9
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 8.8e-16 87.0 104 46.2
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 8.8e-16 87.0 103 49.5
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 8.8e-16 87.0 99 46.5
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 1.1e-15 86.7 102 52.0
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 2.0e-15 85.9 101 51.5
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.6e-15 85.5 101 48.5
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 3.3e-15 85.1 102 49.0
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 3.3e-15 85.1 92 50.0
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 7.4e-15 84.0 103 48.5
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 9.7e-15 83.6 94 46.8
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 9.7e-15 83.6 102 50.0
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 2.2e-14 82.4 79 59.5
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 2.8e-14 82.0 93 45.2
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 4.8e-14 81.3 91 51.6
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 6.3e-14 80.9 104 46.2
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.2e-14 80.5 104 51.0
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.1e-13 80.1 108 46.3
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 1.4e-13 79.7 90 53.3
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.4e-13 79.0 55 67.3
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 2.4e-13 79.0 102 48.0
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.1e-13 78.6 101 45.5
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.1e-13 78.2 104 50.0
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 4.1e-13 78.2 104 50.0
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.6e-12 76.3 94 43.6
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 2.0e-12 75.9 109 42.2
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 2.6e-12 75.5 62 64.5
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 5.9e-12 74.3 60 56.7
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 1.3e-11 73.2 102 46.1
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 2.2e-11 72.4 106 44.3
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 2.2e-11 72.4 60 60.0
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 2.9e-11 72.0 67 53.7
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.8e-11 71.6 90 45.6
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 6.5e-11 70.9 105 43.8
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.5e-11 70.5 104 47.1
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 8.5e-11 70.5 71 50.7
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.1e-10 70.1 72 54.2
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.1e-10 70.1 102 43.1
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 2.5e-10 68.9 98 38.8
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 7.2e-10 67.4 103 41.7
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 4.7e-09 64.7 97 40.2
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 6.1e-09 64.3 59 54.2
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 8.0e-09 63.9 52 59.6
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 8.0e-09 63.9 99 39.4
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 8.0e-09 63.9 52 59.6
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.0e-08 63.5 101 37.6
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 2.3e-08 62.4 60 50.0
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.3e-08 62.4 88 44.3
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 3.0e-08 62.0 52 57.7
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 3.0e-08 62.0 60 50.0
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 4.0e-08 61.6 60 55.0
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 4.0e-08 61.6 96 38.5
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 5.2e-08 61.2 63 49.2
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 5.2e-08 61.2 102 42.2
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 6.7e-08 60.8 98 34.7
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 6.7e-08 60.8 98 34.7
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 6.7e-08 60.8 98 34.7
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 8.8e-08 60.5 60 48.3
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 8.8e-08 60.5 60 48.3
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 8.8e-08 60.5 94 39.4
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-07 60.1 52 55.8
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 1.1e-07 60.1 52 55.8
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 1.1e-07 60.1 52 55.8
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 1.1e-07 60.1 98 35.7
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.5e-07 59.7 101 38.6
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 1.5e-07 59.7 94 41.5
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 3.3e-07 58.5 60 50.0
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 3.3e-07 58.5 75 48.0
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 3.3e-07 58.5 96 37.5
QL08p025461 Quercus lobata HOM05D008890 ORTHO05D004248 3.3e-07 58.5 94 38.3
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 4.4e-07 58.2 53 54.7
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 4.4e-07 58.2 53 54.7
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 4.4e-07 58.2 53 54.7
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 5.7e-07 57.8 67 47.8
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 1.3e-06 56.6 76 43.4
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 1.3e-06 56.6 76 43.4
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 1.3e-06 56.6 76 43.4
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 1.3e-06 56.6 76 43.4
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 1.3e-06 56.6 76 43.4
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.7e-06 56.2 101 39.6
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 2.2e-06 55.8 62 45.2
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 2.8e-06 55.5 53 54.7
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 3.7e-06 55.1 62 50.0
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 4.8e-06 54.7 104 41.3
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 6.3e-06 54.3 94 41.5
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 6.3e-06 54.3 55 49.1
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 8.2e-06 53.9 66 45.5
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 8.2e-06 53.9 66 45.5


User provided reference genes

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