Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g065200 Pisum sativum HOM05D007108 ORTHO05D009128 1.3e-82 309.7 158 100.0
Psat5g082320 Pisum sativum HOM05D007108 ORTHO05D009128 9.8e-30 134.0 78 83.3
Ca_16662_v3 Cicer arietinum L. HOM05D007108 ORTHO05D009128 2.9e-29 132.5 70 87.1
Lj1g0003350 Lotus japonicus HOM05D007108 ORTHO05D009128 2.9e-29 132.5 77 81.8
Glyma.04G239800 Glycine max HOM05D007108 ORTHO05D009128 2.4e-28 129.4 67 88.1
TPR.G18750 Trifolium pratense HOM05D007108 ORTHO05D009128 2.4e-28 129.4 70 84.3
Glyma.06G124100 Glycine max HOM05D007108 ORTHO05D009128 9.2e-28 127.5 70 81.4
Actinidia01141 Actinidia chinensis HOM05D007108 ORTHO05D009128 1.6e-27 126.7 77 79.2
Lalb_Chr11g0066481 Lupinus albus HOM05D007108 ORTHO05D009128 2.0e-27 126.3 70 81.4
TWI34G1539 Tripterygium wilfordii HOM05D007108 ORTHO05D009128 4.6e-27 125.2 70 80.0
VMungo1309G2491 Vigna mungo HOM05D007108 ORTHO05D009128 4.6e-27 125.2 67 83.6
Nn5g28655 Nelumbo nucifera HOM05D007108 ORTHO05D009128 5.9e-27 124.8 70 77.1
Actinidia29517 Actinidia chinensis HOM05D007108 ORTHO05D009128 1.0e-26 124.0 91 68.1
CSS0020358 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 1.0e-26 124.0 70 78.6
CSS0038886 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 1.0e-26 124.0 70 78.6
Medtr3g090490 Medicago truncatula HOM05D007108 ORTHO05D009128 1.0e-26 124.0 70 81.4
Phvul.009G136100 Phaseolus vulgaris HOM05D007108 ORTHO05D009128 1.3e-26 123.6 67 80.6
Thecc.08G146100 Theobroma cacao HOM05D007108 ORTHO05D009128 1.7e-26 123.2 70 75.7
MD05G1017900 Malus domestica HOM05D007108 ORTHO05D009128 2.3e-26 122.9 70 77.1
Atru.chr13.2257 Acer truncatum HOM05D007108 ORTHO05D009128 3.0e-26 122.5 83 68.7
MSTRG.1369 Avicennia marina HOM05D007108 ORTHO05D009128 3.0e-26 122.5 77 74.0
Potri.002G071000 Populus trichocarpa HOM05D007108 ORTHO05D009128 3.9e-26 122.1 73 74.0
arahy.Tifrunner.gnm1.ann1.3M80B2 Arachis hypogaea HOM05D007108 ORTHO05D009128 5.0e-26 121.7 69 79.7
Ciclev10002261m.g Citrus clementina HOM05D007108 ORTHO05D009128 5.0e-26 121.7 70 75.7
Duzib116G0089 Durio zibethinus HOM05D007108 ORTHO05D009128 5.0e-26 121.7 74 74.3
Prupe.8G021900 Prunus persica HOM05D007108 ORTHO05D009128 5.0e-26 121.7 70 77.1
Migut.C01030 Erythranthe guttata HOM05D007108 ORTHO05D009128 6.6e-26 121.3 79 70.9
Gohir.A05G242100 Gossypium hirsutum HOM05D007108 ORTHO05D009128 6.6e-26 121.3 74 73.0
Gohir.D05G243400 Gossypium hirsutum HOM05D007108 ORTHO05D009128 6.6e-26 121.3 74 73.0
CANSAT25G1119 Cannabis sativa HOM05D007108 ORTHO05D009128 1.1e-25 120.6 79 72.2
Cpa.g.sc49.50 Carica papaya HOM05D007108 ORTHO05D009128 1.1e-25 120.6 81 69.1
Eucgr.F02729 Eucalyptus grandis HOM05D007108 ORTHO05D009128 1.5e-25 120.2 70 75.7
CsaV3_7G024840 Cucumis sativus L. HOM05D007108 ORTHO05D009128 1.9e-25 119.8 67 80.6
Os07g0260300 Oryza sativa ssp. japonica HOM05D007108 ORTHO05D009128 1.9e-25 119.8 81 67.9
MELO3C024103.2 Cucumis melo HOM05D007108 ORTHO05D009128 3.3e-25 119.0 67 80.6
Gorai.009G252700 Gossypium raimondii HOM05D007108 ORTHO05D009128 3.3e-25 119.0 74 71.6
Manes.18G088801 Manihot esculenta HOM05D007108 ORTHO05D009128 3.3e-25 119.0 70 74.3
Haze_17721 Corylus avellana HOM05D007108 ORTHO05D009128 4.3e-25 118.6 70 74.3
FAN20G1168 Fragaria x ananassa HOM05D007108 ORTHO05D009128 4.3e-25 118.6 70 74.3
Sc02g0004350 Simmondsia chinensis HOM05D007108 ORTHO05D009128 4.3e-25 118.6 70 74.3
Cc10_g14220 Coffea canephora HOM05D007108 ORTHO05D009128 7.3e-25 117.9 65 80.0
GSVIVG01010051001 Vitis vinifera HOM05D007108 ORTHO05D009128 7.3e-25 117.9 73 71.2
CAN.G1564.2 Capsicum annuum HOM05D007108 ORTHO05D009128 9.5e-25 117.5 77 72.7
ClCG09G009870 Citrullus lanatus HOM05D007108 ORTHO05D009128 9.5e-25 117.5 67 79.1
DCAR_010274 Daucus carota HOM05D007108 ORTHO05D009128 9.5e-25 117.5 70 75.7
Sed0009335 Sechium edule HOM05D007108 ORTHO05D009128 9.5e-25 117.5 67 77.6
Sopen04g026870 Solanum pennellii HOM05D007108 ORTHO05D009128 9.5e-25 117.5 77 72.7
RcHm_v2.0_Chr6g0276751 Rosa chinensis HOM05D007108 ORTHO05D009128 1.6e-24 116.7 70 74.3
Nitab4.5_0000299g0220 Nicotiana tabacum HOM05D007108 ORTHO05D009128 2.1e-24 116.3 70 74.3
Rhsim07G0025600 Rhododendron simsii HOM05D007108 ORTHO05D009128 2.1e-24 116.3 68 75.0
ATR1136G010 Amborella trichopoda HOM05D007108 ORTHO05D009128 2.8e-24 115.9 70 72.9
Aqoxy5G02215 Aquilegia oxysepala HOM05D007108 ORTHO05D009128 2.8e-24 115.9 70 72.9
FvH4_2g14420 Fragaria vesca HOM05D007108 ORTHO05D009128 2.8e-24 115.9 70 72.9
QL02p024940 Quercus lobata HOM05D007108 ORTHO05D009128 2.8e-24 115.9 70 74.3
CiPaw.16G016700 Carya illinoinensis HOM05D007108 ORTHO05D009128 3.6e-24 115.5 80 67.5
vmacro13384 Vaccinium macrocarpon HOM05D007108 ORTHO05D009128 3.6e-24 115.5 70 71.4
COL.COLO4_06005 Corchorus olitorius HOM05D007108 ORTHO05D009128 4.7e-24 115.2 70 72.9
TAR628G0410 Trochodendron aralioides HOM05D007108 ORTHO05D009128 6.2e-24 114.8 70 74.3
Peaxi162Scf00263g00613 Petunia axillaris HOM05D007108 ORTHO05D009128 1.4e-23 113.6 77 70.1
Solyc04g064930.3 Solanum lycopersicum HOM05D007108 ORTHO05D009128 1.4e-23 113.6 77 70.1
EL10Ac1g01484 Beta vulgaris HOM05D007108 ORTHO05D009128 1.8e-23 113.2 80 62.5
PSO782G4411 Papaver somniferum HOM05D007108 ORTHO05D009128 2.3e-23 112.8 70 72.9
Lsat_1_v5_gn_9_77661 Lactuca sativa HOM05D007108 ORTHO05D009128 3.1e-23 112.5 70 71.4
HanXRQChr16g0500661 Helianthus annuus HOM05D007108 ORTHO05D009128 4.0e-23 112.1 88 61.4
THA.LOC104812052 Tarenaya hassleriana HOM05D007108 ORTHO05D009128 4.0e-23 112.1 78 66.7
ECA232G2155 Erigeron canadensis HOM05D007108 ORTHO05D009128 5.2e-23 111.7 70 68.6
BcaB07g32123 Brassica carinata HOM05D007108 ORTHO05D009128 8.9e-23 110.9 70 71.4
BcaC05g26041 Brassica carinata HOM05D007108 ORTHO05D009128 8.9e-23 110.9 70 71.4
A06p17400 Brassica napus HOM05D007108 ORTHO05D009128 8.9e-23 110.9 80 67.5
C05p20230 Brassica napus HOM05D007108 ORTHO05D009128 8.9e-23 110.9 70 71.4
CDE08G0865 Ceratophyllum demersum HOM05D007108 ORTHO05D009128 8.9e-23 110.9 70 70.0
BraA06t24837Z Brassica rapa HOM05D007108 ORTHO05D009128 1.2e-22 110.5 70 70.0
PSO063G1249 Papaver somniferum HOM05D007108 ORTHO05D009128 1.2e-22 110.5 70 71.4
CARHR021740 Cardamine hirsuta HOM05D007108 ORTHO05D009128 1.5e-22 110.2 70 70.0
Zm00001eb097150 Zea mays HOM05D007108 ORTHO05D009128 2.0e-22 109.8 67 71.6
AT1G21350 Arabidopsis thaliana HOM05D007108 ORTHO05D009128 3.4e-22 109.0 70 70.0
Aa31LG7G5350 Aethionema arabicum HOM05D007108 ORTHO05D009128 4.4e-22 108.6 70 68.6
Thhalv10008558m.g Eutrema salsugineum HOM05D007108 ORTHO05D009128 4.4e-22 108.6 70 68.6
Sp1g18900 Schrenkiella parvula HOM05D007108 ORTHO05D009128 4.4e-22 108.6 70 70.0
BolC5t30716H Brassica oleracea HOM05D007108 ORTHO05D009128 5.8e-22 108.2 70 70.0
arahy.Tifrunner.gnm1.ann1.QUZ9E8 Arachis hypogaea HOM05D007108 ORTHO05D009128 7.5e-22 107.8 97 57.7
Carub.0001s2075 Capsella rubella HOM05D007108 ORTHO05D009128 7.5e-22 107.8 70 68.6
AL1G34450 Arabidopsis lyrata HOM05D007108 ORTHO05D009128 4.9e-21 105.1 70 68.6
SEGI_12340 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 4.9e-21 105.1 96 57.3
Hma1.2p1_0107F.1_g051540 Hydrangea macrophylla HOM05D007108 ORTHO05D009128 8.3e-21 104.4 70 67.1
SGA_v2.0_scaffold24G10368 Striga asiatica HOM05D007108 ORTHO05D009128 8.3e-21 104.4 60 76.7
Oeu000778.2 Olea europaea HOM05D007108 ORTHO05D009128 1.1e-20 104.0 113 49.6
SEGI_05187 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 4.1e-20 102.1 66 69.7
AagrBONN_evm.TU.Sc2ySwM_117.292 Anthoceros agrestis HOM05D007108 ORTHO05D009128 4.6e-19 98.6 71 62.0
SEGI_19863 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 3.0e-18 95.9 64 68.8
CBR_g41654 Chara braunii HOM05D007108 ORTHO05D009128 1.9e-17 93.2 74 58.1
unitig_26.g9907 Utricularia gibba HOM05D007108 ORTHO05D009128 7.3e-17 91.3 56 71.4
Pp3c20_22500 Physcomitrium patens HOM05D007108 ORTHO05D009128 6.2e-16 88.2 64 67.2
Pp3c23_490 Physcomitrium patens HOM05D007108 ORTHO05D009128 7.5e-14 81.3 53 67.9
HanXRQChr03g0063741 Helianthus annuus HOM05D007108 ORTHO05D009128 8.3e-13 77.8 42 78.6
SMO347G0599 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 2.4e-12 76.3 51 64.7
Dinv41114 Davidia involucrata HOM05D007108 ORTHO05D009128 7.8e-11 71.2 77 51.9
AUR62013508 Chenopodium quinoa HOM05D007108 ORTHO05D009128 1.0e-10 70.9 116 38.8
FAN15G3050 Fragaria x ananassa HOM05D007108 ORTHO05D009128 1.0e-10 70.9 42 69.0
FAN24G1879 Fragaria x ananassa HOM05D007108 ORTHO05D009128 1.0e-10 70.9 42 69.0
AUR62026764 Chenopodium quinoa HOM05D007108 ORTHO05D009128 1.3e-10 70.5 91 44.0
Sabra02G0055700 Salix brachista HOM05D007108 ORTHO05D009128 3.0e-10 69.3 45 64.4
Dinv25820 Davidia involucrata HOM05D007108 ORTHO05D009128 5.6e-09 65.1 43 65.1
Ca_16660_v3 Cicer arietinum L. HOM05D006773 ORTHO05D008775 9.5e-09 64.3 39 74.4
Cre17.g715500 Chlamydomonas reinhardtii HOM05D007108 ORTHO05D009128 1.6e-08 63.5 64 43.8
Psat1g114960 Pisum sativum HOM05D007108 ORTHO05D003402 1.4e-07 60.5 31 96.8


User provided reference genes

Program Settings