Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g063800 Pisum sativum HOM05D049989 ORTHO05D000022 4.3e-92 341.3 167 100.0
Psat4g029800 Pisum sativum HOM05D000003 ORTHO05D000004 6.5e-24 114.8 137 46.0
Psat4g161760 Pisum sativum HOM05D049989 ORTHO05D000022 2.2e-19 99.8 107 43.9
Psat7g059240 Pisum sativum HOM05D000003 ORTHO05D000022 1.2e-17 94.0 165 36.4
LjContig00357g0004525 Lotus japonicus HOM05D000003 ORTHO05D000022 1.6e-14 83.6 166 29.5
arahy.Tifrunner.gnm1.ann1.I6PHI5 Arachis hypogaea HOM05D000003 ORTHO05D000022 1.4e-13 80.5 133 30.1
QL09p016348 Quercus lobata HOM05D000155 ORTHO05D000022 1.2e-12 77.4 169 29.0
Psat1g022800 Pisum sativum HOM05D000003 ORTHO05D011085 2.0e-12 76.6 156 28.2
Psat5g042040 Pisum sativum HOM05D000003 ORTHO05D000022 4.4e-12 75.5 65 50.8
Lj6g0023576 Lotus japonicus HOM05D000003 ORTHO05D000022 2.8e-11 72.8 144 29.2
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-11 71.6 168 28.0
Phvul.006G170300 Phaseolus vulgaris HOM05D000062 ORTHO05D000043 6.3e-11 71.6 164 26.8
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 6.3e-11 71.6 159 24.5
RcHm_v2.0_Chr5g0040021 Rosa chinensis HOM05D000003 ORTHO05D000022 6.3e-11 71.6 159 24.5
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-10 70.9 132 31.1
QL02p058259 Quercus lobata HOM05D000155 ORTHO05D000022 1.1e-10 70.9 135 32.6
QL93p0100_0664 Quercus lobata HOM05D000155 ORTHO05D000022 1.1e-10 70.9 135 32.6
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-10 70.1 132 28.0
RcHm_v2.0_Chr3g0484381 Rosa chinensis HOM05D000003 ORTHO05D000022 1.8e-10 70.1 156 25.6
RcHm_v2.0_Chr3g0484471 Rosa chinensis HOM05D000003 ORTHO05D000022 1.8e-10 70.1 156 25.6
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 4.1e-10 68.9 157 25.5
Thecc.06G023800 Theobroma cacao HOM05D000003 ORTHO05D000006 4.1e-10 68.9 105 37.1
Lj4g0025065 Lotus japonicus HOM05D000155 ORTHO05D000022 9.1e-10 67.8 133 26.3
Atru.chr8.1057 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-09 67.4 133 27.8
Psat2g152240 Pisum sativum HOM05D000003 ORTHO05D000022 1.2e-09 67.4 89 33.7
Thecc.06G025800 Theobroma cacao HOM05D000003 ORTHO05D000022 1.2e-09 67.4 105 37.1
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-09 67.0 132 25.8
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-09 67.0 173 26.0
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-09 67.0 172 30.8
Psat5g143280 Pisum sativum HOM05D000003 ORTHO05D011085 1.6e-09 67.0 96 33.3
Glyma.13G224100 Glycine max HOM05D000062 ORTHO05D000043 2.0e-09 66.6 164 26.8
RcHm_v2.0_Chr6g0266871 Rosa chinensis HOM05D000003 ORTHO05D000022 2.0e-09 66.6 157 26.1
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-09 66.2 132 28.0
Lj4g0002379 Lotus japonicus HOM05D000003 ORTHO05D000022 2.7e-09 66.2 133 27.1
PSO210G5133 Papaver somniferum HOM05D000003 ORTHO05D000022 2.7e-09 66.2 120 32.5
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 2.7e-09 66.2 167 26.3
COL.COLO4_29577 Corchorus olitorius HOM05D000003 ORTHO05D000004 3.5e-09 65.9 149 29.5
Atru.chr1.1701 Acer truncatum HOM05D000003 ORTHO05D000022 4.5e-09 65.5 132 28.8
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-09 65.5 150 27.3
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 5.9e-09 65.1 149 26.2
RcHm_v2.0_Chr2g0132921 Rosa chinensis HOM05D000003 ORTHO05D000022 5.9e-09 65.1 133 27.1
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 5.9e-09 65.1 109 31.2
VMungo0540G1625 Vigna mungo HOM05D000062 ORTHO05D000043 5.9e-09 65.1 134 26.9
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 7.7e-09 64.7 156 28.2
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-08 64.3 146 28.8
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-08 64.3 132 28.0
Atru.chr10.394 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-08 64.3 126 30.2
Psat6g017960 Pisum sativum HOM05D000003 ORTHO05D000022 1.0e-08 64.3 155 25.2
Psat0ss25082g0120 Pisum sativum HOM05D017489 ORTHO05D000022 1.3e-08 63.9 104 32.7
Psat2g065480 Pisum sativum HOM05D000650 ORTHO05D010020 1.3e-08 63.9 133 29.3
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-08 63.5 139 26.6
Atru.chr3.2200 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-08 63.5 156 25.6
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-08 63.5 152 28.9
QL03p058466 Quercus lobata HOM05D000003 ORTHO05D000022 1.7e-08 63.5 138 29.0
SHI49810 Sapria himalayana HOM05D004990 ORTHO05D000022 1.7e-08 63.5 155 29.0
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-08 63.2 92 35.9
COL.COLO4_13287 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.2e-08 63.2 149 29.5
RcHm_v2.0_Chr7g0220091 Rosa chinensis HOM05D000003 ORTHO05D000022 2.2e-08 63.2 133 26.3
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 2.9e-08 62.8 133 30.1
Atru.chr2.3435 Acer truncatum HOM05D000003 ORTHO05D000022 2.9e-08 62.8 133 28.6
BolC1t02896H Brassica oleracea HOM05D004976 ORTHO05D004851 2.9e-08 62.8 134 32.8
Psat1g167240 Pisum sativum HOM05D000003 ORTHO05D000022 2.9e-08 62.8 154 27.3
Psat4g006520 Pisum sativum HOM05D000003 ORTHO05D000006 2.9e-08 62.8 99 32.3
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 2.9e-08 62.8 139 25.9
Atru.chr9.1443 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-08 62.4 133 30.8
Atru.chr9.658 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-08 62.4 149 29.5
CSS0009143 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 3.8e-08 62.4 166 27.1
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 5.0e-08 62.0 164 29.3
Atru.chr2.53 Acer truncatum HOM05D000003 ORTHO05D000022 5.0e-08 62.0 90 32.2
QL01p007248 Quercus lobata HOM05D000003 ORTHO05D000022 5.0e-08 62.0 134 26.1
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 6.5e-08 61.6 132 28.8
SHI43481 Sapria himalayana HOM05D004990 ORTHO05D000022 6.5e-08 61.6 155 28.4
MBI05_g02408_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.5e-08 61.2 145 26.2
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 8.5e-08 61.2 157 29.3
SHI41297 Sapria himalayana HOM05D004990 ORTHO05D000022 8.5e-08 61.2 155 28.4
Atru.chr2.2394 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-07 60.8 163 25.2
Aqoxy2G01822 Aquilegia oxysepala HOM05D000650 ORTHO05D000022 1.1e-07 60.8 131 28.2
Aqoxy3G01725 Aquilegia oxysepala HOM05D000003 ORTHO05D000283 1.1e-07 60.8 131 28.2
Aqoxy4G00320 Aquilegia oxysepala HOM05D000650 ORTHO05D000022 1.1e-07 60.8 131 28.2
FvH4_3g27901 Fragaria vesca HOM05D000003 ORTHO05D000022 1.1e-07 60.8 147 24.5
MBI02_g08989_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.1e-07 60.8 160 30.0
Atru.chr7.170 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-07 60.5 179 27.4
Aqoxy2G00457 Aquilegia oxysepala HOM05D000650 ORTHO05D000022 1.5e-07 60.5 129 27.1
Atru.chr10.897 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-07 60.1 115 30.4
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 1.9e-07 60.1 135 27.4
RcHm_v2.0_Chr2g0125461 Rosa chinensis HOM05D000003 ORTHO05D000022 1.9e-07 60.1 147 25.9
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 1.9e-07 60.1 130 24.6
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-07 59.7 173 24.9
Aqoxy3G01961 Aquilegia oxysepala HOM05D009705 ORTHO05D000022 2.5e-07 59.7 133 30.8
Atru.chr12.2484 Acer truncatum HOM05D000003 ORTHO05D000022 3.2e-07 59.3 132 28.8
SHI19424 Sapria himalayana HOM05D004990 ORTHO05D000022 3.2e-07 59.3 136 28.7
MBI09_g37944_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.2e-07 58.9 143 27.3
PSO724G0731 Papaver somniferum HOM05D000155 ORTHO05D000022 4.2e-07 58.9 141 28.4
MBI10_g18257_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.5e-07 58.5 145 29.7
QL07p015378 Quercus lobata HOM05D000155 ORTHO05D000022 5.5e-07 58.5 109 27.5
Sopen08g024310 Solanum pennellii HOM05D000003 ORTHO05D000006 5.5e-07 58.5 147 23.8
Aqoxy4G01321 Aquilegia oxysepala HOM05D000650 ORTHO05D000022 7.2e-07 58.2 131 28.2
COL.COLO4_30280 Corchorus olitorius HOM05D000155 ORTHO05D000022 7.2e-07 58.2 111 27.0
FvH4_2g12061 Fragaria vesca HOM05D000003 ORTHO05D000022 7.2e-07 58.2 135 25.2
SHI50070 Sapria himalayana HOM05D004990 ORTHO05D000022 7.2e-07 58.2 155 27.1
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 9.4e-07 57.8 132 26.5
Aqoxy5G02742 Aquilegia oxysepala HOM05D000650 ORTHO05D000022 9.4e-07 57.8 131 27.5
CSS0047653 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 9.4e-07 57.8 129 24.0
FvH4_6g18164 Fragaria vesca HOM05D000003 ORTHO05D000022 9.4e-07 57.8 159 22.6
Psat2g039320 Pisum sativum HOM05D000024 ORTHO05D000006 9.4e-07 57.8 77 36.4
SHI44174 Sapria himalayana HOM05D004990 ORTHO05D000022 9.4e-07 57.8 149 30.2
Atru.chr11.1190 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-06 57.4 142 28.2
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-06 57.4 88 30.7
FvH4_1g24182 Fragaria vesca HOM05D000003 ORTHO05D000004 1.2e-06 57.4 134 23.1
MBI16_g42110_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.2e-06 57.4 166 27.7
QL01p018268 Quercus lobata HOM05D000155 ORTHO05D000022 1.2e-06 57.4 143 26.6
Aqoxy7G02362 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.6e-06 57.0 163 22.1
RcHm_v2.0_Chr2g0152401 Rosa chinensis HOM05D000003 ORTHO05D000022 1.6e-06 57.0 120 25.8
RcHm_v2.0_Chr3g0494391 Rosa chinensis HOM05D000003 ORTHO05D000022 1.6e-06 57.0 134 25.4
Lj4A86T98 Lonicera japonica HOM05D000650 ORTHO05D010020 2.1e-06 56.6 157 24.8
MBI06_g05819_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.1e-06 56.6 171 26.9
MBI07_g16917_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.1e-06 56.6 148 26.4
Nn4g24897 Nelumbo nucifera HOM05D021400 ORTHO05D000007 2.1e-06 56.6 161 26.7
PSO832G1931 Papaver somniferum HOM05D000003 ORTHO05D000004 2.1e-06 56.6 86 30.2
Psat5g292000 Pisum sativum HOM05D009122 ORTHO05D012377 2.1e-06 56.6 126 25.4
QL10p004112 Quercus lobata HOM05D000155 ORTHO05D000022 2.1e-06 56.6 89 37.1
RcHm_v2.0_Chr4g0426191 Rosa chinensis HOM05D000003 ORTHO05D000022 2.1e-06 56.6 134 25.4
RcHm_v2.0_Chr4g0404581 Rosa chinensis HOM05D000003 ORTHO05D000022 2.7e-06 56.2 131 28.2
Lalb_Chr17g0341421 Lupinus albus HOM05D014548 ORTHO05D016940 3.6e-06 55.8 158 25.3
MBI01_g02748_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.6e-06 55.8 133 29.3
MBI16_g11026_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.6e-06 55.8 141 27.7
RcHm_v2.0_Chr4g0422501 Rosa chinensis HOM05D000003 ORTHO05D000022 3.6e-06 55.8 128 28.9
Sabra07G0074300 Salix brachista HOM05D000609 ORTHO05D000462 3.6e-06 55.8 134 29.9
Hund07702 Selenicereus undatus HOM05D001688 ORTHO05D001571 3.6e-06 55.8 157 28.7
TPR.G17004 Trifolium pratense HOM05D000003 ORTHO05D000022 3.6e-06 55.8 116 29.3
Atru.chr13.1498 Acer truncatum HOM05D000003 ORTHO05D000022 4.7e-06 55.5 137 25.5
arahy.Tifrunner.gnm1.ann1.S50QTL Arachis hypogaea HOM05D000011 ORTHO05D002639 4.7e-06 55.5 131 24.4
MBI01_g01262_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.7e-06 55.5 138 24.6
Psat3g030560 Pisum sativum HOM05D000003 ORTHO05D000004 4.7e-06 55.5 63 46.0
Prupe.1G162400 Prunus persica HOM05D000003 ORTHO05D000022 4.7e-06 55.5 143 24.5
RcHm_v2.0_Chr2g0128961 Rosa chinensis HOM05D000003 ORTHO05D000022 4.7e-06 55.5 134 24.6
Thecc.04G000200 Theobroma cacao HOM05D000155 ORTHO05D000022 4.7e-06 55.5 123 28.5
Atru.chr3.867 Acer truncatum HOM05D000003 ORTHO05D000022 6.1e-06 55.1 136 27.2
COL.COLO4_06865 Corchorus olitorius HOM05D007909 ORTHO05D000743 6.1e-06 55.1 109 30.3
Nitab4.5_0004849g0010 Nicotiana tabacum HOM05D000155 ORTHO05D000022 6.1e-06 55.1 133 26.3
TPR.G1810 Trifolium pratense HOM05D000290 ORTHO05D007415 6.1e-06 55.1 163 27.6
Aqoxy1G03921 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 8.0e-06 54.7 149 27.5
Aqoxy7G01573 Aquilegia oxysepala HOM05D000650 ORTHO05D010020 8.0e-06 54.7 132 28.8
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 8.0e-06 54.7 122 27.0
MBI16_g05639_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.0e-06 54.7 165 26.1
Prupe.1G291700 Prunus persica HOM05D000061 ORTHO05D000050 8.0e-06 54.7 83 34.9
RcHm_v2.0_Chr4g0393821 Rosa chinensis HOM05D000003 ORTHO05D000022 8.0e-06 54.7 132 28.8
RcHm_v2.0_Chr4g0437331 Rosa chinensis HOM05D000003 ORTHO05D000022 8.0e-06 54.7 131 25.2


User provided reference genes

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