Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g060160 Pisum sativum HOM05D008992 ORTHO05D002272 9.2e-179 630.2 332 100.0
Medtr8g089530 Medicago truncatula HOM05D008992 ORTHO05D002272 1.6e-69 267.3 419 44.6
Ca_03843_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 2.3e-49 200.3 280 46.1
Medtr8g089440 Medicago truncatula HOM05D008992 ORTHO05D002272 3.1e-49 199.9 228 50.9
Medtr8g089480 Medicago truncatula HOM05D008992 ORTHO05D002272 3.1e-49 199.9 228 50.9
Psat0s921g0280 Pisum sativum HOM05D008992 ORTHO05D002272 2.6e-48 196.8 366 37.4
TPR.G6199 Trifolium pratense HOM05D008992 ORTHO05D002272 4.9e-47 192.6 220 51.4
Medtr2g006000 Medicago truncatula HOM05D008992 ORTHO05D002272 3.2e-46 189.9 228 49.6
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 7.0e-46 188.7 216 51.9
TPR.G6214 Trifolium pratense HOM05D008992 ORTHO05D002272 2.7e-45 186.8 225 49.8
Medtr8g089500 Medicago truncatula HOM05D008992 ORTHO05D002272 7.8e-45 185.3 418 37.6
Ca_17802_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 1.5e-43 181.0 376 36.4
Psat0s3155g0080 Pisum sativum HOM05D008992 ORTHO05D002272 4.3e-43 179.5 220 47.3
TPR.G6204 Trifolium pratense HOM05D008992 ORTHO05D002272 1.6e-42 177.6 218 47.2
Medtr8g089540 Medicago truncatula HOM05D008992 ORTHO05D002272 6.4e-39 165.6 155 58.1
Lj4g0010390 Lotus japonicus HOM05D008992 ORTHO05D002272 1.6e-37 161.0 219 41.1
TPR.G35385 Trifolium pratense HOM05D008992 ORTHO05D002272 3.3e-35 153.3 196 47.4
VMungo0251G0856 Vigna mungo HOM05D008992 ORTHO05D002272 3.1e-33 146.7 223 40.8
Lj4g0020153 Lotus japonicus HOM05D008992 ORTHO05D002272 1.5e-32 144.4 209 41.1
Lj1g0000579 Lotus japonicus HOM05D008992 ORTHO05D002272 4.4e-32 142.9 354 33.6
Ca_16626_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 5.1e-28 129.4 237 43.5
Lalb_Chr07g0185621 Lupinus albus HOM05D008992 ORTHO05D002272 8.7e-28 128.6 333 33.0
Lj4g0011648 Lotus japonicus HOM05D008992 ORTHO05D002272 7.3e-27 125.6 201 38.8
Hma1.2p1_1114F.1_g258730 Hydrangea macrophylla HOM05D002972 ORTHO05D002272 3.6e-26 123.2 216 39.4
Lalb_Chr12g0204211 Lupinus albus HOM05D008992 ORTHO05D002272 8.1e-26 122.1 184 40.2
Medtr4g417290 Medicago truncatula HOM05D008992 ORTHO05D002272 9.0e-25 118.6 239 38.5
Lalb_Chr07g0190491 Lupinus albus HOM05D008992 ORTHO05D002272 2.0e-24 117.5 181 40.3
Rhsim08G0123100 Rhododendron simsii HOM05D002972 ORTHO05D002272 2.0e-24 117.5 274 33.6
arahy.Tifrunner.gnm1.ann1.C8FNMN Arachis hypogaea HOM05D008992 ORTHO05D002272 1.4e-22 111.3 186 37.1
arahy.Tifrunner.gnm1.ann1.1MNX0Y Arachis hypogaea HOM05D008992 ORTHO05D002272 5.4e-22 109.4 186 37.1
Medtr2g022010 Medicago truncatula HOM05D008992 ORTHO05D002272 2.7e-21 107.1 207 39.6
CSS0037442 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 4.3e-19 99.8 216 35.2
Cpa.g.sc6.181 Carica papaya HOM05D002972 ORTHO05D002272 6.2e-18 95.9 220 34.1
COL.COLO4_21920 Corchorus olitorius HOM05D000126 ORTHO05D002272 1.2e-16 91.7 182 34.1
COL.COLO4_22003 Corchorus olitorius HOM05D002972 ORTHO05D002272 3.4e-16 90.1 316 26.6
Nitab4.5_0003885g0010 Nicotiana tabacum HOM05D002972 ORTHO05D002272 1.3e-15 88.2 161 36.0
COL.COLO4_31049 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.7e-15 87.8 274 28.1
Duzib147G0607 Durio zibethinus HOM05D002972 ORTHO05D002272 1.7e-15 87.8 341 28.4
Nitab4.5_0003159g0070 Nicotiana tabacum HOM05D002972 ORTHO05D002272 2.2e-15 87.4 158 37.3
Thecc.01G020000 Theobroma cacao HOM05D000126 ORTHO05D000085 2.2e-15 87.4 183 31.7
Peaxi162Scf00126g10126 Petunia axillaris HOM05D002972 ORTHO05D002272 2.9e-15 87.0 214 31.3
Medtr4g417280 Medicago truncatula HOM05D000053 ORTHO05D002272 4.9e-15 86.3 345 29.6
Gohir.A11G175900 Gossypium hirsutum HOM05D000126 ORTHO05D000085 8.4e-15 85.5 180 31.7
Gorai.007G195600 Gossypium raimondii HOM05D000126 ORTHO05D000085 1.4e-14 84.7 180 31.7
TWI09G0202 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 1.4e-14 84.7 210 28.6
Duzib052G0730 Durio zibethinus HOM05D002972 ORTHO05D002272 1.9e-14 84.3 246 32.1
Duzib147G1519 Durio zibethinus HOM05D000126 ORTHO05D000085 4.2e-14 83.2 182 31.9
Peaxi162Scf00015g00238 Petunia axillaris HOM05D002972 ORTHO05D002272 4.2e-14 83.2 214 30.8
Ciclev10028228m.g Citrus clementina HOM05D002972 ORTHO05D002272 1.2e-13 81.6 209 31.6
CSS0006608 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 4.6e-13 79.7 290 28.6
AUR62007622 Chenopodium quinoa HOM05D001706 ORTHO05D001789 6.0e-13 79.3 216 30.1
Duzib264G0210 Durio zibethinus HOM05D000126 ORTHO05D000085 1.0e-12 78.6 182 30.8
Dinv29033 Davidia involucrata HOM05D002972 ORTHO05D002272 2.3e-12 77.4 188 33.0
PGSC0003DMG400002637 Solanum tuberosum HOM05D002972 ORTHO05D002272 5.1e-12 76.3 215 30.2
Cc07_g10090 Coffea canephora HOM05D002972 ORTHO05D002272 6.7e-12 75.9 217 32.3
Medtr8g089435 Medicago truncatula HOM05D008992 ORTHO05D002272 8.7e-12 75.5 203 34.5
Ciclev10025208m.g Citrus clementina HOM05D000126 ORTHO05D000085 1.1e-11 75.1 120 35.0
Solyc03g120360.1 Solanum lycopersicum HOM05D002972 ORTHO05D002272 1.1e-11 75.1 217 28.1
Dinv41127 Davidia involucrata HOM05D002972 ORTHO05D002272 1.5e-11 74.7 141 35.5
Thecc.02G058300 Theobroma cacao HOM05D002972 ORTHO05D002272 1.5e-11 74.7 245 28.6
CANSAT25G2833 Cannabis sativa HOM05D002972 ORTHO05D002272 1.9e-11 74.3 231 29.0
Manes.01G145200 Manihot esculenta HOM05D000126 ORTHO05D000085 1.9e-11 74.3 119 33.6
ClCG02G004020 Citrullus lanatus HOM05D002972 ORTHO05D002272 3.3e-11 73.6 204 30.4
Dinv05661 Davidia involucrata HOM05D002972 ORTHO05D002272 3.3e-11 73.6 152 34.9
Dinv14511 Davidia involucrata HOM05D002972 ORTHO05D002272 4.3e-11 73.2 122 38.5
Manes.11G096900 Manihot esculenta HOM05D002972 ORTHO05D002272 5.6e-11 72.8 215 27.9
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 1.3e-10 71.6 219 29.7
Sopen03g039260 Solanum pennellii HOM05D002972 ORTHO05D002272 1.3e-10 71.6 307 24.8
TWI09G0157 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 1.6e-10 71.2 302 24.5
COL.COLO4_22001 Corchorus olitorius HOM05D002972 ORTHO05D002272 2.1e-10 70.9 166 31.9
EL10As8g23886 Beta vulgaris HOM05D002972 ORTHO05D002272 2.8e-10 70.5 224 29.5
ECA247G2489 Erigeron canadensis HOM05D000555 ORTHO05D000646 2.8e-10 70.5 101 35.6
Migut.L00029 Erythranthe guttata HOM05D002972 ORTHO05D002272 2.8e-10 70.5 178 27.0
SalBow1G2737 Salvia bowleyana HOM05D012638 ORTHO05D002272 2.8e-10 70.5 177 28.2
TWI79G0168 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 2.8e-10 70.5 145 31.7
Dinv37647 Davidia involucrata HOM05D002972 ORTHO05D002272 3.7e-10 70.1 323 26.0
Hund14010 Selenicereus undatus HOM05D002972 ORTHO05D002272 1.4e-09 68.2 193 31.1
SalBow6G4808 Salvia bowleyana HOM05D002972 ORTHO05D002272 1.8e-09 67.8 141 31.9
vmacro17724 Vaccinium macrocarpon HOM05D002972 ORTHO05D002272 4.0e-09 66.6 154 31.8
BolC3t15632H Brassica oleracea HOM05D002972 ORTHO05D002272 5.3e-09 66.2 197 26.4
COL.COLO4_07334 Corchorus olitorius HOM05D002972 ORTHO05D002272 5.3e-09 66.2 204 30.4
Eucgr.I01432 Eucalyptus grandis HOM05D002972 ORTHO05D002272 5.3e-09 66.2 201 28.4
BcaC01g04860 Brassica carinata HOM05D002972 ORTHO05D002272 1.2e-08 65.1 197 25.9
Lj4A209T44 Lonicera japonica HOM05D002972 ORTHO05D002272 1.2e-08 65.1 324 28.1
Aa31LG6G16600 Aethionema arabicum HOM05D002972 ORTHO05D002272 1.5e-08 64.7 170 25.3
Oeu009176.1 Olea europaea HOM05D012638 ORTHO05D002272 1.5e-08 64.7 171 27.5
THA.LOC104807376 Tarenaya hassleriana HOM05D002972 ORTHO05D002272 1.5e-08 64.7 103 36.9
Cpa.g.sc10.98 Carica papaya HOM05D002972 ORTHO05D002272 2.0e-08 64.3 201 29.4
PGR142G3650 Punica granatum HOM05D002972 ORTHO05D002272 2.0e-08 64.3 130 33.1
Hund14008 Selenicereus undatus HOM05D002972 ORTHO05D002272 2.0e-08 64.3 204 28.9
Aa31LG3G16020 Aethionema arabicum HOM05D002972 ORTHO05D002272 2.6e-08 63.9 181 26.0
Gohir.A03G205300 Gossypium hirsutum HOM05D002972 ORTHO05D002272 3.4e-08 63.5 140 32.9
C03p33060 Brassica napus HOM05D002972 ORTHO05D002272 5.8e-08 62.8 197 25.9
ECA247G2469 Erigeron canadensis HOM05D000555 ORTHO05D000646 5.8e-08 62.8 106 34.0
ECA247G3063 Erigeron canadensis HOM05D000555 ORTHO05D000646 5.8e-08 62.8 136 27.2
Gohir.D02G226600 Gossypium hirsutum HOM05D002972 ORTHO05D002272 5.8e-08 62.8 191 26.2
Gorai.005G254500 Gossypium raimondii HOM05D002972 ORTHO05D002272 5.8e-08 62.8 191 26.2
TWI18G1012 Tripterygium wilfordii HOM05D000555 ORTHO05D000646 5.8e-08 62.8 134 30.6
CAN.G774.16 Capsicum annuum HOM05D012638 ORTHO05D002272 7.6e-08 62.4 110 32.7
unitig_0.g1105 Utricularia gibba HOM05D002972 ORTHO05D002272 9.9e-08 62.0 155 29.7
BcaC07g41180 Brassica carinata HOM05D002972 ORTHO05D002272 1.3e-07 61.6 212 26.9
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.3e-07 61.6 173 31.2
HanXRQChr02g0033841 Helianthus annuus HOM05D000555 ORTHO05D000646 1.3e-07 61.6 91 31.9
HanXRQChr02g0033881 Helianthus annuus HOM05D002069 ORTHO05D002997 1.3e-07 61.6 131 29.8
Sp3g30180 Schrenkiella parvula HOM05D002972 ORTHO05D002272 1.3e-07 61.6 184 27.2
C08p41890 Brassica napus HOM05D002972 ORTHO05D002272 1.7e-07 61.2 212 26.9
BolC8t51752H Brassica oleracea HOM05D002972 ORTHO05D002272 1.7e-07 61.2 212 26.9
ECA247G0643 Erigeron canadensis HOM05D002069 ORTHO05D002997 1.7e-07 61.2 132 31.1
Thhalv10022729m.g Eutrema salsugineum HOM05D002972 ORTHO05D002272 2.2e-07 60.8 185 28.6
Nitab4.5_0001454g0160 Nicotiana tabacum HOM05D000555 ORTHO05D000646 2.2e-07 60.8 175 29.7
BcaC01g00236 Brassica carinata HOM05D002972 ORTHO05D002272 2.9e-07 60.5 167 29.3
CAN.G774.17 Capsicum annuum HOM05D012638 ORTHO05D002272 3.8e-07 60.1 102 35.3
BcaB01g02960 Brassica carinata HOM05D002972 ORTHO05D002272 6.4e-07 59.3 242 25.2
BcaB08g34952 Brassica carinata HOM05D002972 ORTHO05D002272 8.4e-07 58.9 222 24.8
Migut.I00843 Erythranthe guttata HOM05D002972 ORTHO05D002272 8.4e-07 58.9 199 27.6
Gohir.A12G036900 Gossypium hirsutum HOM05D002972 ORTHO05D002272 8.4e-07 58.9 234 24.8
BraA08t34372Z Brassica rapa HOM05D002972 ORTHO05D002272 1.1e-06 58.5 182 27.5
Nitab4.5_0000580g0290 Nicotiana tabacum HOM05D012638 ORTHO05D002272 1.1e-06 58.5 134 32.8
Thhalv10024827m.g Eutrema salsugineum HOM05D002972 ORTHO05D002272 1.4e-06 58.2 212 23.6
Aa31LG7G15670 Aethionema arabicum HOM05D002972 ORTHO05D002272 1.9e-06 57.8 242 27.3
Manes.11G065600 Manihot esculenta HOM05D000555 ORTHO05D000646 1.9e-06 57.8 150 28.7
Sopen03g035910 Solanum pennellii HOM05D000555 ORTHO05D000646 1.9e-06 57.8 149 30.9
CARHR294290 Cardamine hirsuta HOM05D002972 ORTHO05D002272 2.5e-06 57.4 170 24.1
Glyma.08G129502 Glycine max HOM05D008992 ORTHO05D002272 2.5e-06 57.4 96 32.3
Gohir.D12G035500 Gossypium hirsutum HOM05D002972 ORTHO05D002272 2.5e-06 57.4 181 26.5
Lj4A209T45 Lonicera japonica HOM05D002972 ORTHO05D002272 2.5e-06 57.4 340 27.1
PGR142G3299 Punica granatum HOM05D002972 ORTHO05D002272 2.5e-06 57.4 156 28.2
AT2G20950 Arabidopsis thaliana HOM05D002972 ORTHO05D002272 3.2e-06 57.0 171 25.1
CAN.G774.15 Capsicum annuum HOM05D012638 ORTHO05D002272 3.2e-06 57.0 106 33.0
CiPaw.05G083100 Carya illinoinensis HOM05D002972 ORTHO05D002272 3.2e-06 57.0 140 27.9
Dinv10222 Davidia involucrata HOM05D002972 ORTHO05D002272 3.2e-06 57.0 110 34.5
Dinv21340 Davidia involucrata HOM05D002972 ORTHO05D002272 3.2e-06 57.0 142 28.2
Oeu028335.1 Olea europaea HOM05D000555 ORTHO05D002272 3.2e-06 57.0 235 25.1
BcaC07g41183 Brassica carinata HOM05D002972 ORTHO05D002272 4.2e-06 56.6 136 27.2
C08p41900 Brassica napus HOM05D002972 ORTHO05D002272 4.2e-06 56.6 136 27.2
BolC8t51753H Brassica oleracea HOM05D002972 ORTHO05D002272 4.2e-06 56.6 136 27.2
Thhalv10000063m.g Eutrema salsugineum HOM05D002972 ORTHO05D002272 4.2e-06 56.6 237 24.1
Lsat_1_v5_gn_1_32161 Lactuca sativa HOM05D000555 ORTHO05D000646 4.2e-06 56.6 133 30.1
TAR633G1264 Trochodendron aralioides HOM05D002972 ORTHO05D002272 4.2e-06 56.6 193 27.5
A03p46120 Brassica napus HOM05D002972 ORTHO05D002272 5.5e-06 56.2 160 30.0
A09p58600 Brassica napus HOM05D002972 ORTHO05D002272 5.5e-06 56.2 170 24.7
BraA09t41247Z Brassica rapa HOM05D002972 ORTHO05D002272 5.5e-06 56.2 170 24.7
CARHR107190 Cardamine hirsuta HOM05D002972 ORTHO05D002272 5.5e-06 56.2 131 29.8
CAN.G407.58 Capsicum annuum HOM05D000555 ORTHO05D000646 9.3e-06 55.5 133 30.8
ECA236G0425 Erigeron canadensis HOM05D000555 ORTHO05D000646 9.3e-06 55.5 116 23.3
HanXRQChr02g0043901 Helianthus annuus HOM05D000555 ORTHO05D000646 9.3e-06 55.5 107 31.8


User provided reference genes

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