Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g046880 Pisum sativum HOM05D000883 ORTHO05D008470 7.7e-70 266.9 126 100.0
Psat7g033160 Pisum sativum HOM05D000883 ORTHO05D008470 6.2e-19 97.8 54 79.6
TPR.G12783 Trifolium pratense HOM05D000883 ORTHO05D008470 3.1e-18 95.5 79 55.7
Ca_17532_v3 Cicer arietinum L. HOM05D000883 ORTHO05D008470 1.2e-17 93.6 54 72.2
PGR042G3209 Punica granatum HOM05D000883 ORTHO05D008470 1.2e-17 93.6 68 58.8
Glyma.05G208000 Glycine max HOM05D000883 ORTHO05D008470 1.5e-17 93.2 54 68.5
Prupe.5G100200 Prunus persica HOM05D000883 ORTHO05D008470 2.6e-17 92.4 68 55.9
ECA233G4152 Erigeron canadensis HOM05D000883 ORTHO05D008470 4.4e-17 91.7 68 54.4
Medtr8g098240 Medicago truncatula HOM05D000883 ORTHO05D008470 4.4e-17 91.7 79 53.2
Rhsim02G0231300 Rhododendron simsii HOM05D000883 ORTHO05D008470 4.4e-17 91.7 68 55.9
Ciclev10019111m.g Citrus clementina HOM05D000883 ORTHO05D008470 7.6e-17 90.9 68 54.4
Lalb_Chr16g0389991 Lupinus albus HOM05D000883 ORTHO05D008470 7.6e-17 90.9 54 68.5
vmacro11334 Vaccinium macrocarpon HOM05D000883 ORTHO05D008470 7.6e-17 90.9 68 57.4
Actinidia02005 Actinidia chinensis HOM05D000883 ORTHO05D008470 9.9e-17 90.5 68 54.4
Thecc.03G278800 Theobroma cacao HOM05D000883 ORTHO05D008470 1.7e-16 89.7 68 54.4
GSVIVG01019754001 Vitis vinifera HOM05D000883 ORTHO05D008470 1.7e-16 89.7 68 55.9
Haze_08833 Corylus avellana HOM05D000883 ORTHO05D008470 2.9e-16 89.0 54 66.7
FAN04G0265 Fragaria x ananassa HOM05D000883 ORTHO05D008470 2.9e-16 89.0 68 51.5
Glyma.08G014700 Glycine max HOM05D000883 ORTHO05D008470 2.9e-16 89.0 54 66.7
Manes.01G060700 Manihot esculenta HOM05D000883 ORTHO05D008470 2.9e-16 89.0 68 57.4
THA.LOC104806407 Tarenaya hassleriana HOM05D000883 ORTHO05D008470 2.9e-16 89.0 67 56.7
Atru.chr9.2189 Acer truncatum HOM05D000883 ORTHO05D008470 3.8e-16 88.6 68 54.4
FAN08G2773 Fragaria x ananassa HOM05D000883 ORTHO05D008470 3.8e-16 88.6 68 51.5
FAN13G0852 Fragaria x ananassa HOM05D000883 ORTHO05D008470 3.8e-16 88.6 68 51.5
MD06G1083100 Malus domestica HOM05D000883 ORTHO05D008470 3.8e-16 88.6 68 52.9
MSTRG.25608 Avicennia marina HOM05D000883 ORTHO05D008470 4.9e-16 88.2 54 66.7
COL.COLO4_34463 Corchorus olitorius HOM05D000883 ORTHO05D008470 4.9e-16 88.2 68 52.9
Dinv38943 Davidia involucrata HOM05D000141 ORTHO05D001860 4.9e-16 88.2 68 54.4
Aqoxy7G00323 Aquilegia oxysepala HOM05D000883 ORTHO05D008470 6.4e-16 87.8 67 55.2
FvH4_5g02410 Fragaria vesca HOM05D000883 ORTHO05D008470 6.4e-16 87.8 68 50.0
FAN18G1393 Fragaria x ananassa HOM05D000883 ORTHO05D008470 6.4e-16 87.8 68 50.0
Actinidia14562 Actinidia chinensis HOM05D000883 ORTHO05D008470 8.4e-16 87.4 54 64.8
CiPaw.11G135300 Carya illinoinensis HOM05D000883 ORTHO05D008470 8.4e-16 87.4 54 66.7
TAR374G0271 Trochodendron aralioides HOM05D000883 ORTHO05D008470 8.4e-16 87.4 63 57.1
MBI18_g21560_MAGBIO Magnolia biondii HOM05D000883 ORTHO05D008470 1.1e-15 87.0 53 67.9
AL6G45880 Arabidopsis lyrata HOM05D000883 ORTHO05D008470 1.4e-15 86.7 66 56.1
Sabra03G0090800 Salix brachista HOM05D000883 ORTHO05D008470 1.4e-15 86.7 84 50.0
Cc08_g14750 Coffea canephora HOM05D000883 ORTHO05D008470 1.9e-15 86.3 56 62.5
Phvul.002G289600 Phaseolus vulgaris HOM05D000883 ORTHO05D008470 1.9e-15 86.3 54 63.0
Migut.A00763 Erythranthe guttata HOM05D000883 ORTHO05D008470 2.4e-15 85.9 54 63.0
Os02g0665200 Oryza sativa ssp. japonica HOM05D000883 ORTHO05D008470 2.4e-15 85.9 53 67.9
ATR0680G152 Amborella trichopoda HOM05D000883 ORTHO05D008470 3.2e-15 85.5 53 67.9
Peaxi162Scf00119g00945 Petunia axillaris HOM05D000883 ORTHO05D008470 3.2e-15 85.5 54 66.7
AT4G11440 Arabidopsis thaliana HOM05D000883 ORTHO05D008470 4.2e-15 85.1 70 55.7
BcaB05g23827 Brassica carinata HOM05D000883 ORTHO05D008470 4.2e-15 85.1 70 51.4
CARHR255110 Cardamine hirsuta HOM05D000883 ORTHO05D008470 4.2e-15 85.1 54 63.0
Solyc08g081070.3 Solanum lycopersicum HOM05D000883 ORTHO05D008470 4.2e-15 85.1 54 68.5
Sopen08g029390 Solanum pennellii HOM05D000883 ORTHO05D008470 4.2e-15 85.1 54 68.5
PGSC0003DMG400012208 Solanum tuberosum HOM05D000883 ORTHO05D008470 4.2e-15 85.1 54 68.5
VMungo0251G1923 Vigna mungo HOM05D000883 ORTHO05D008470 4.2e-15 85.1 54 63.0
Carub.0006s3037 Capsella rubella HOM05D000883 ORTHO05D008470 5.4e-15 84.7 54 63.0
Eucgr.E00597 Eucalyptus grandis HOM05D000883 ORTHO05D008470 5.4e-15 84.7 52 65.4
Peaxi162Scf00147g00176 Petunia axillaris HOM05D000883 ORTHO05D008470 5.4e-15 84.7 54 66.7
RcHm_v2.0_Chr7g0197691 Rosa chinensis HOM05D000883 ORTHO05D008470 5.4e-15 84.7 54 59.3
TAR375G0473 Trochodendron aralioides HOM05D000141 ORTHO05D001860 5.4e-15 84.7 67 53.7
SGA_v2.0_scaffold173G39186 Striga asiatica HOM05D000883 ORTHO05D008470 7.1e-15 84.3 54 64.8
Lj4g0009030 Lotus japonicus HOM05D000883 ORTHO05D008470 9.3e-15 84.0 54 64.8
BcaC03g16351 Brassica carinata HOM05D000883 ORTHO05D008470 1.2e-14 83.6 54 61.1
A02p26250 Brassica napus HOM05D000883 ORTHO05D008470 1.2e-14 83.6 54 61.1
C02p41750 Brassica napus HOM05D000883 ORTHO05D008470 1.2e-14 83.6 54 61.1
BolC2t10191H Brassica oleracea HOM05D000883 ORTHO05D008470 1.2e-14 83.6 54 61.1
BraA02t07626Z Brassica rapa HOM05D000883 ORTHO05D008470 1.2e-14 83.6 54 61.1
Sp6g06000 Schrenkiella parvula HOM05D000883 ORTHO05D008470 1.2e-14 83.6 54 61.1
HPP92_015170 Vanilla planifolia HOM05D000883 ORTHO05D008470 1.2e-14 83.6 61 59.0
Duzib084G0727 Durio zibethinus HOM05D000883 ORTHO05D008470 1.6e-14 83.2 53 62.3
Gohir.D09G186500 Gossypium hirsutum HOM05D000883 ORTHO05D008470 1.6e-14 83.2 54 64.8
Gorai.006G209300 Gossypium raimondii HOM05D000883 ORTHO05D008470 1.6e-14 83.2 54 64.8
Potri.003G127600 Populus trichocarpa HOM05D000883 ORTHO05D008470 1.6e-14 83.2 68 54.4
Sc01g0009570 Simmondsia chinensis HOM05D000883 ORTHO05D008470 1.6e-14 83.2 83 48.2
Thhalv10028506m.g Eutrema salsugineum HOM05D000883 ORTHO05D008470 2.7e-14 82.4 54 61.1
CsaV3_5G002800 Cucumis sativus L. HOM05D000883 ORTHO05D008470 3.5e-14 82.0 52 59.6
Sed0006846 Sechium edule HOM05D000883 ORTHO05D008470 3.5e-14 82.0 52 59.6
QL12p033060 Quercus lobata HOM05D000883 ORTHO05D008470 4.6e-14 81.6 54 63.0
HanXRQChr07g0189851 Helianthus annuus HOM05D000883 ORTHO05D008470 6.0e-14 81.3 68 50.0
CANSAT21G1555 Cannabis sativa HOM05D000883 ORTHO05D008470 1.0e-13 80.5 68 51.5
CANSAT21G1792 Cannabis sativa HOM05D000883 ORTHO05D008470 1.0e-13 80.5 68 51.5
Lsat_1_v5_gn_6_6541 Lactuca sativa HOM05D000883 ORTHO05D008470 1.3e-13 80.1 57 54.4
PSO782G1513 Papaver somniferum HOM05D000883 ORTHO05D008470 1.7e-13 79.7 55 60.0
CAN.G774.41 Capsicum annuum HOM05D000883 ORTHO05D008470 2.3e-13 79.3 55 60.0
AUR62010681 Chenopodium quinoa HOM05D000883 ORTHO05D008470 3.0e-13 79.0 68 50.0
PSO478G3026 Papaver somniferum HOM05D000883 ORTHO05D008470 3.9e-13 78.6 55 58.2
AUR62017201 Chenopodium quinoa HOM05D000883 ORTHO05D008470 5.1e-13 78.2 68 50.0
Aa31LG9G10790 Aethionema arabicum HOM05D000883 ORTHO05D008470 1.1e-12 77.0 52 59.6
DCAR_006740 Daucus carota HOM05D000883 ORTHO05D008470 1.9e-12 76.3 54 57.4
EL10Ac5g13062 Beta vulgaris HOM05D000883 ORTHO05D008470 3.3e-12 75.5 53 60.4
Oeu009156.1 Olea europaea HOM05D000883 ORTHO05D008470 3.3e-12 75.5 83 44.6
Ah.12g056900 Amaranthus hybridus HOM05D000883 ORTHO05D008470 7.4e-12 74.3 54 55.6
arahy.Tifrunner.gnm1.ann1.3KPW58 Arachis hypogaea HOM05D000883 ORTHO05D008470 9.6e-12 73.9 44 63.6
CBR_g32117 Chara braunii HOM05D000883 ORTHO05D008470 9.6e-12 73.9 61 54.1
CSS0003376 Camellia sinensis var. sinensis HOM05D000883 ORTHO05D008470 4.8e-11 71.6 44 63.6
CSS0021014 Camellia sinensis var. sinensis HOM05D000883 ORTHO05D008470 4.8e-11 71.6 44 63.6
Psat0s2767g0080 Pisum sativum HOM05D000728 ORTHO05D001992 4.8e-11 71.6 44 68.2
SMO147G0434 Selaginella moellendorffii HOM05D000883 ORTHO05D008470 1.8e-10 69.7 52 57.7
ClCG01G002700 Citrullus lanatus HOM05D000883 ORTHO05D008470 3.1e-10 68.9 51 51.0
TWI15G0376 Tripterygium wilfordii HOM05D000883 ORTHO05D008470 9.0e-10 67.4 44 61.4
SEGI_05823 Sequoiadendron giganteum HOM05D000883 ORTHO05D008470 2.6e-09 65.9 68 45.6
Pp3c21_5550 Physcomitrium patens HOM05D000883 ORTHO05D008470 5.8e-09 64.7 53 50.9
Nitab4.5_0010968g0050 Nicotiana tabacum HOM05D000883 ORTHO05D008470 7.6e-09 64.3 53 52.8
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 9.9e-09 63.9 57 49.1
Pp3c21_6200 Physcomitrium patens HOM05D000883 ORTHO05D008470 1.3e-08 63.5 53 52.8
unitig_32.g11600 Utricularia gibba HOM05D000883 ORTHO05D008470 1.4e-07 60.1 52 51.9
PRCOL_00001401 Prasinoderma coloniale HOM05D001639 ORTHO05D008470 2.4e-07 59.3 61 44.3
Pp3c18_13120 Physcomitrium patens HOM05D000883 ORTHO05D008470 4.2e-07 58.5 52 51.9
Zm00001eb186850 Zea mays HOM05D000883 ORTHO05D008470 4.2e-07 58.5 42 54.8


User provided reference genes

Program Settings