Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 5.9e-241 837.0 395 100.0
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 3.5e-201 704.9 395 83.8
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 4.3e-199 698.0 393 82.4
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 1.2e-193 679.9 395 81.0
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 1.6e-182 642.9 393 75.1
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 6.8e-181 637.5 394 75.9
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 4.9e-179 631.3 407 71.7
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 3.8e-171 605.1 395 71.1
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 4.1e-170 601.7 395 71.1
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 3.9e-160 568.5 394 65.0
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 1.1e-159 567.0 393 65.6
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 1.1e-159 567.0 393 66.2
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 1.1e-159 567.0 394 65.7
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 4.3e-159 565.1 394 65.0
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 1.1e-157 560.5 394 66.2
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 1.1e-157 560.5 395 64.8
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 3.1e-157 558.9 351 73.8
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 6.9e-157 557.8 394 64.0
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 4.9e-155 551.6 394 64.2
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 1.1e-154 550.4 394 63.5
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 1.4e-154 550.1 393 63.1
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 1.8e-152 543.1 393 62.1
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 2.1e-150 536.2 398 62.1
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 2.8e-150 535.8 393 60.3
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 4.8e-150 535.0 397 62.5
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 6.2e-150 534.6 393 60.8
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.4e-149 533.5 397 62.0
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 1.8e-149 533.1 394 60.9
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 2.4e-149 532.7 392 59.7
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 3.1e-149 532.3 398 61.8
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.0e-149 531.9 397 61.7
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 1.7e-147 526.6 388 61.3
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 2.9e-147 525.8 395 60.3
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 1.2e-145 520.4 393 60.3
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.1e-145 519.6 390 61.8
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 4.6e-145 518.5 343 69.4
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 6.0e-145 518.1 392 58.4
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.5e-143 513.5 392 58.4
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 3.3e-143 512.3 392 58.4
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 1.3e-142 510.4 327 72.5
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 1.3e-142 510.4 350 65.4
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 1.3e-142 510.4 392 59.2
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 6.2e-142 508.1 393 59.5
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 6.2e-142 508.1 392 58.2
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 1.4e-141 506.9 393 58.5
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 1.8e-141 506.5 404 58.7
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 3.1e-141 505.8 396 59.3
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 3.1e-141 505.8 392 58.7
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 4.0e-141 505.4 393 58.8
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 4.0e-141 505.4 395 57.2
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 6.9e-141 504.6 395 56.7
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 6.9e-141 504.6 393 57.3
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 1.5e-140 503.4 433 56.4
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 4.5e-140 501.9 395 56.2
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 7.6e-140 501.1 392 56.6
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 1.0e-139 500.7 395 57.0
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 1.0e-139 500.7 426 55.4
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 4.2e-138 495.4 390 56.9
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 7.1e-138 494.6 394 56.3
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 7.1e-138 494.6 394 56.3
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 6.7e-136 488.0 400 55.5
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 1.1e-135 487.3 417 53.7
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 1.1e-135 487.3 398 57.3
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 5.7e-135 485.0 417 52.8
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 7.4e-135 484.6 344 61.3
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 7.2e-130 468.0 369 59.6
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 7.2e-130 468.0 343 62.7
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 2.4e-125 453.0 352 59.1
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 5.0e-123 445.3 388 53.9
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 6.5e-123 444.9 377 55.4
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 7.2e-122 441.4 353 55.5
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 4.7e-121 438.7 397 51.4
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.4e-120 437.2 391 53.2
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 1.8e-120 436.8 341 60.1
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 2.0e-119 433.3 430 48.1
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 6.1e-113 411.8 394 50.3
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 1.5e-111 407.1 311 60.8
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 8.2e-110 401.4 510 42.2
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 5.0e-107 392.1 298 60.7
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 4.4e-103 379.0 312 56.7
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 3.7e-102 375.9 490 43.1
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 9.1e-101 371.3 332 52.1
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 6.8e-96 355.1 290 56.2
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 2.4e-93 346.7 277 57.8
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 1.9e-90 337.0 312 51.6
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 4.2e-90 335.9 391 44.0
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 9.5e-90 334.7 299 55.5
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 7.5e-87 325.1 258 56.2
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 1.3e-86 324.3 196 73.5
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 6.6e-83 312.0 400 43.2
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 1.4e-77 294.3 258 56.6
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 7.0e-77 292.0 263 52.1
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 9.2e-77 291.6 211 61.6
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 3.1e-72 276.6 355 43.1
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 1.7e-70 270.8 167 70.7
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 3.0e-67 260.0 190 63.2
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 6.6e-67 258.8 264 49.6
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 6.4e-62 242.3 158 70.3
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 5.4e-61 239.2 158 69.6
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.2e-60 238.0 346 37.6
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 7.8e-60 235.3 159 66.0
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 1.9e-58 230.7 306 42.8
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 2.4e-56 223.8 162 66.7
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 8.9e-56 221.9 437 30.7
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 3.0e-51 206.8 235 44.7
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 2.1e-44 184.1 156 51.9
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 1.1e-42 178.3 231 39.0
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 3.4e-39 166.8 299 32.8
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 7.6e-39 165.6 250 39.2
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 1.7e-38 164.5 250 39.2
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 1.4e-37 161.4 178 43.8
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 5.6e-34 149.4 407 25.8
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 1.5e-31 141.4 92 67.4
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 5.8e-31 139.4 78 78.2
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 2.5e-26 124.0 98 64.3
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 1.3e-25 121.7 86 64.0
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 2.6e-23 114.0 68 73.5
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 4.5e-23 113.2 104 51.9
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 2.7e-20 104.0 97 49.5
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 9.7e-18 95.5 117 43.6
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 1.8e-16 91.3 207 28.5
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 3.1e-16 90.5 88 52.3
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.2e-15 88.6 141 34.0
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 6.1e-12 76.3 85 45.9
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 8.8e-11 72.4 40 75.0
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 9.1e-08 62.4 51 54.9
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 2.6e-07 60.8 63 39.7


User provided reference genes

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