Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 1.9e-101 372.5 182 100.0
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 3.1e-80 302.0 186 79.6
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 4.7e-68 261.5 185 73.0
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 5.7e-66 254.6 151 79.5
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 2.4e-64 249.2 181 68.0
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 2.0e-63 246.1 183 65.6
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 2.7e-63 245.7 174 70.7
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 2.9e-62 242.3 180 67.8
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 2.9e-62 242.3 183 67.8
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 6.6e-62 241.1 175 68.0
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 8.6e-62 240.7 177 67.8
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.6e-60 236.5 168 67.9
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 2.8e-60 235.7 177 66.1
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 2.8e-60 235.7 174 67.8
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 4.7e-60 235.0 169 65.7
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 4.7e-60 235.0 168 69.0
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 8.0e-60 234.2 169 65.7
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 8.0e-60 234.2 169 66.9
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.0e-59 233.8 169 65.7
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.4e-59 233.4 172 68.0
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.8e-59 233.0 169 65.7
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 2.3e-59 232.6 163 69.3
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 2.3e-59 232.6 168 69.0
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 4.0e-59 231.9 174 66.1
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 2.0e-58 229.6 174 66.1
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 2.6e-58 229.2 185 63.2
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 7.5e-58 227.6 182 63.2
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 9.8e-58 227.3 139 75.5
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 9.8e-58 227.3 179 64.2
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.7e-57 226.5 177 62.7
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.7e-57 226.5 179 64.2
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 2.2e-57 226.1 174 66.1
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 2.2e-57 226.1 174 66.7
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 6.4e-57 224.6 179 63.7
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.1e-56 223.8 172 65.7
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.8e-56 223.0 182 61.5
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 4.1e-56 221.9 175 62.9
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 4.1e-56 221.9 169 63.3
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 5.4e-56 221.5 188 60.1
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 5.4e-56 221.5 171 64.3
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 9.2e-56 220.7 182 61.0
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 2.0e-55 219.5 182 60.4
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 5.9e-55 218.0 176 63.1
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 7.8e-55 217.6 183 60.7
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 7.8e-55 217.6 136 72.1
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 1.7e-54 216.5 181 59.1
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.7e-54 216.5 174 63.8
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.0e-54 215.7 129 78.3
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 8.6e-54 214.2 187 59.4
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.1e-53 213.8 135 71.9
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 1.1e-53 213.8 156 66.0
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.5e-53 213.4 191 56.5
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.5e-53 213.4 163 65.0
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.9e-53 213.0 179 59.2
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.9e-53 213.0 185 57.8
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 3.3e-53 212.2 169 61.5
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 4.3e-53 211.8 135 71.9
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 4.3e-53 211.8 185 59.5
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 5.6e-53 211.5 185 57.8
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 5.6e-53 211.5 175 59.4
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 7.3e-53 211.1 187 57.8
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 7.3e-53 211.1 153 66.7
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 7.3e-53 211.1 171 61.4
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.5e-53 210.7 132 72.7
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.6e-52 209.9 175 62.3
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 2.1e-52 209.5 132 72.0
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.1e-52 209.5 132 72.0
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.1e-52 209.5 132 72.0
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.1e-52 209.5 172 60.5
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 2.8e-52 209.1 178 60.1
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.8e-52 209.1 137 67.9
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 3.6e-52 208.8 137 69.3
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 4.7e-52 208.4 137 68.6
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 4.7e-52 208.4 137 69.3
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 6.2e-52 208.0 176 58.5
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 8.0e-52 207.6 128 73.4
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.4e-51 206.8 137 68.6
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.8e-51 206.5 137 68.6
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.8e-51 206.5 169 59.8
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.8e-51 206.5 175 61.1
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 2.3e-51 206.1 128 72.7
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 6.8e-51 204.5 137 67.9
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 6.8e-51 204.5 137 67.9
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 6.8e-51 204.5 180 57.8
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 8.9e-51 204.1 209 52.6
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 1.2e-50 203.8 168 59.5
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 1.5e-50 203.4 138 69.6
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 3.4e-50 202.2 176 56.2
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 4.4e-50 201.8 152 63.8
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 5.8e-50 201.4 129 69.8
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 9.8e-50 200.7 135 69.6
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 1.3e-49 200.3 135 67.4
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.7e-49 199.9 186 57.5
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.7e-49 199.9 185 55.1
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 2.9e-49 199.1 168 58.9
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 3.7e-49 198.7 136 69.9
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.7e-49 198.7 130 70.0
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 3.7e-49 198.7 180 55.6
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 4.9e-49 198.4 153 61.4
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 4.9e-49 198.4 138 66.7
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 6.4e-49 198.0 137 65.7
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 8.3e-49 197.6 170 60.6
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 8.3e-49 197.6 186 56.5
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.1e-48 197.2 134 70.1
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.4e-48 196.1 142 66.9
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 4.1e-48 195.3 180 55.6
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 7.0e-48 194.5 142 64.8
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 1.2e-47 193.7 138 65.9
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.6e-47 193.4 193 53.4
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 2.7e-47 192.6 248 44.8
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 4.6e-47 191.8 115 73.0
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 3.0e-46 189.1 167 57.5
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 8.6e-46 187.6 137 63.5
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 8.6e-46 187.6 158 61.4
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 2.5e-45 186.0 146 61.6
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.6e-44 183.3 272 41.2
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.6e-44 183.3 183 50.8
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.4e-43 180.3 117 67.5
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 8.9e-43 177.6 156 61.5
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 8.9e-43 177.6 128 65.6
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 2.6e-42 176.0 169 55.0
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 5.8e-42 174.9 115 80.0
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.7e-41 173.3 120 68.3
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.1e-39 166.4 163 54.6
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.0e-38 164.1 125 56.8
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 1.7e-38 163.3 118 64.4
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 3.0e-38 162.5 124 60.5
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.1e-35 152.5 87 75.9
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 4.0e-35 152.1 155 59.4
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 1.4e-32 143.7 72 87.5
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.4e-32 142.9 93 73.1
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.6e-28 130.2 140 45.7
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.6e-28 129.0 86 67.4
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.8e-27 126.7 76 69.7
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 5.2e-27 125.2 80 73.8
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 7.1e-24 114.8 113 58.4
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 3.5e-23 112.5 72 63.9
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 1.1e-21 107.5 65 69.2
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.9e-21 106.7 116 40.5
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.1e-19 100.9 102 44.1
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 7.6e-18 94.7 60 66.7
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 5.8e-10 68.6 88 50.0
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 7.6e-10 68.2 35 82.9
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.0e-06 57.8 89 38.2


User provided reference genes

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