Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g030520 Pisum sativum HOM05D001378 ORTHO05D011347 2.3e-45 185.3 97 100.0
Psat3g083360 Pisum sativum HOM05D001378 ORTHO05D001249 4.2e-23 111.3 84 78.6
Psat7g215760 Pisum sativum HOM05D001378 ORTHO05D001249 4.2e-23 111.3 84 78.6
Glyma.01G015600 Glycine max HOM05D001378 ORTHO05D001249 1.0e-08 63.5 36 91.7
Psat0s401g0080 Pisum sativum HOM05D000415 ORTHO05D011347 1.0e-08 63.5 41 80.5
VMungo1215G0833 Vigna mungo HOM05D001378 ORTHO05D001249 2.9e-08 62.0 36 88.9
Ca_08149_v3 Cicer arietinum L. HOM05D001378 ORTHO05D001249 8.5e-08 60.5 33 93.9
Phvul.002G138200 Phaseolus vulgaris HOM05D001378 ORTHO05D001249 8.5e-08 60.5 36 86.1
arahy.Tifrunner.gnm1.ann1.50YMIU Arachis hypogaea HOM05D001378 ORTHO05D001249 1.1e-07 60.1 36 86.1
arahy.Tifrunner.gnm1.ann1.BB0AZK Arachis hypogaea HOM05D001378 ORTHO05D001249 1.1e-07 60.1 36 86.1
arahy.Tifrunner.gnm1.ann1.HRV8GT Arachis hypogaea HOM05D001378 ORTHO05D001249 1.1e-07 60.1 36 86.1
Ca_22660_v3 Cicer arietinum L. HOM05D001378 ORTHO05D001249 1.1e-07 60.1 37 86.5
Lj4g0002993 Lotus japonicus HOM05D001378 ORTHO05D001249 1.1e-07 60.1 37 86.5
Medtr8g066340 Medicago truncatula HOM05D001378 ORTHO05D001249 1.1e-07 60.1 37 86.5
Glyma.09G206800 Glycine max HOM05D001378 ORTHO05D001249 1.4e-07 59.7 36 86.1
Lalb_Chr16g0381171 Lupinus albus HOM05D001378 ORTHO05D001249 1.4e-07 59.7 37 86.5
Psat3g142200 Pisum sativum HOM05D000415 ORTHO05D011347 1.4e-07 59.7 43 79.1
Psat4g036160 Pisum sativum HOM05D000415 ORTHO05D015561 1.4e-07 59.7 40 80.0
Psat4g188680 Pisum sativum HOM05D000415 ORTHO05D002017 1.4e-07 59.7 43 79.1
Psat7g171400 Pisum sativum HOM05D000415 ORTHO05D010695 1.4e-07 59.7 43 79.1
TPR.G8084 Trifolium pratense HOM05D001378 ORTHO05D001249 1.4e-07 59.7 37 83.8
CANSAT21G2403 Cannabis sativa HOM05D001378 ORTHO05D001249 1.9e-07 59.3 37 86.5
TPR.G19299 Trifolium pratense HOM05D000415 ORTHO05D002017 1.9e-07 59.3 40 80.0
Phvul.003G283400 Phaseolus vulgaris HOM05D001378 ORTHO05D001249 2.5e-07 58.9 36 86.1
Psat4g122440 Pisum sativum HOM05D001378 ORTHO05D001249 2.5e-07 58.9 38 81.6
TPR.G3337 Trifolium pratense HOM05D001378 ORTHO05D001249 2.5e-07 58.9 37 83.8
VMungo0251G3286 Vigna mungo HOM05D001378 ORTHO05D001249 2.5e-07 58.9 36 86.1
arahy.Tifrunner.gnm1.ann1.6HWF75 Arachis hypogaea HOM05D001378 ORTHO05D001249 3.2e-07 58.5 36 86.1
arahy.Tifrunner.gnm1.ann1.VK0N59 Arachis hypogaea HOM05D001378 ORTHO05D001249 3.2e-07 58.5 36 83.3
ECA240G2955 Erigeron canadensis HOM05D001378 ORTHO05D001249 3.2e-07 58.5 36 86.1
Glyma.16G075400 Glycine max HOM05D001378 ORTHO05D001249 3.2e-07 58.5 36 86.1
Lj2g0003265 Lotus japonicus HOM05D001378 ORTHO05D001249 3.2e-07 58.5 36 83.3
arahy.Tifrunner.gnm1.ann1.7X6P0W Arachis hypogaea HOM05D001378 ORTHO05D001249 4.2e-07 58.2 47 70.2
Glyma.16G091900 Glycine max HOM05D001378 ORTHO05D001249 5.5e-07 57.8 36 86.1
Medtr5g029650 Medicago truncatula HOM05D001378 ORTHO05D001249 5.5e-07 57.8 33 90.9
arahy.Tifrunner.gnm1.ann1.B4DJMI Arachis hypogaea HOM05D001363 ORTHO05D002212 7.2e-07 57.4 44 72.7
Ca_23322_v3 Cicer arietinum L. HOM05D000415 ORTHO05D002017 7.2e-07 57.4 40 77.5
SalBow6G5822 Salvia bowleyana HOM05D001378 ORTHO05D001249 7.2e-07 57.4 36 83.3
Psat2g058120 Pisum sativum HOM05D000415 ORTHO05D011347 9.3e-07 57.0 83 53.0
Actinidia25988 Actinidia chinensis HOM05D001378 ORTHO05D001249 1.2e-06 56.6 38 78.9
MD06G1038300 Malus domestica HOM05D001378 ORTHO05D001249 1.2e-06 56.6 37 81.1
Psat2g107280 Pisum sativum HOM05D000415 ORTHO05D011347 1.2e-06 56.6 40 70.0
Psat6g219280 Pisum sativum HOM05D000415 ORTHO05D011347 1.2e-06 56.6 43 76.7
Prupe.5G030000 Prunus persica HOM05D001378 ORTHO05D001249 1.6e-06 56.2 36 83.3
QL12p001140 Quercus lobata HOM05D001378 ORTHO05D001249 1.6e-06 56.2 36 83.3
HanXRQChr17g0538071 Helianthus annuus HOM05D001378 ORTHO05D001249 2.1e-06 55.8 36 80.6
Lj3g0001253 Lotus japonicus HOM05D000415 ORTHO05D002017 2.1e-06 55.8 40 75.0
MD16G1270600 Malus domestica HOM05D001378 ORTHO05D001249 2.1e-06 55.8 36 83.3
Medtr8g017080 Medicago truncatula HOM05D000415 ORTHO05D002017 2.1e-06 55.8 40 75.0
Nitab4.5_0002778g0030 Nicotiana tabacum HOM05D001378 ORTHO05D001249 2.1e-06 55.8 38 73.7
TWI81G0969 Tripterygium wilfordii HOM05D001378 ORTHO05D001249 2.1e-06 55.8 36 83.3
Lsat_1_v5_gn_6_95781 Lactuca sativa HOM05D001378 ORTHO05D001249 2.7e-06 55.5 39 74.4
Aqoxy3G02215 Aquilegia oxysepala HOM05D001378 ORTHO05D001249 3.6e-06 55.1 48 70.8
arahy.Tifrunner.gnm1.ann1.FDL07N Arachis hypogaea HOM05D001003 ORTHO05D003884 3.6e-06 55.1 44 70.5
CSS0014381 Camellia sinensis var. sinensis HOM05D000415 ORTHO05D011347 3.6e-06 55.1 45 62.2
SGA_v2.0_scaffold198G41082 Striga asiatica HOM05D001378 ORTHO05D001249 3.6e-06 55.1 36 80.6
arahy.Tifrunner.gnm1.ann1.1J3RWB Arachis hypogaea HOM05D001378 ORTHO05D001249 4.6e-06 54.7 44 68.2
CAN.G137.3 Capsicum annuum HOM05D001378 ORTHO05D001249 4.6e-06 54.7 36 77.8
CAN.G474.15 Capsicum annuum HOM05D001378 ORTHO05D001249 4.6e-06 54.7 36 75.0
Lsat_1_v5_gn_3_19561 Lactuca sativa HOM05D001378 ORTHO05D001249 4.6e-06 54.7 36 77.8
Nitab4.5_0000109g0090 Nicotiana tabacum HOM05D001378 ORTHO05D001249 4.6e-06 54.7 36 77.8
Nitab4.5_0009549g0040 Nicotiana tabacum HOM05D001378 ORTHO05D001249 4.6e-06 54.7 36 77.8
Oeu028872.2 Olea europaea HOM05D001378 ORTHO05D001249 4.6e-06 54.7 36 80.6
Sed0021549 Sechium edule HOM05D001378 ORTHO05D001249 4.6e-06 54.7 37 78.4
Solyc06g062360.3 Solanum lycopersicum HOM05D001378 ORTHO05D001249 4.6e-06 54.7 36 77.8
Sopen06g021580 Solanum pennellii HOM05D001378 ORTHO05D001249 4.6e-06 54.7 36 77.8
PGSC0003DMG400017837 Solanum tuberosum HOM05D001378 ORTHO05D001249 4.6e-06 54.7 36 77.8
PGSC0003DMG401016772 Solanum tuberosum HOM05D001378 ORTHO05D001249 4.6e-06 54.7 36 77.8
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 4.6e-06 54.7 38 71.1
AL3G26020 Arabidopsis lyrata HOM05D000415 ORTHO05D002017 6.1e-06 54.3 40 70.0
CAN.G1588.3 Capsicum annuum HOM05D000415 ORTHO05D002017 6.1e-06 54.3 36 77.8
CDE02G1653 Ceratophyllum demersum HOM05D002889 ORTHO05D002017 6.1e-06 54.3 36 77.8
CDE08G0296 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 6.1e-06 54.3 36 77.8
Dinv37911 Davidia involucrata HOM05D000415 ORTHO05D002017 6.1e-06 54.3 40 72.5
Migut.A01082 Erythranthe guttata HOM05D001378 ORTHO05D001249 6.1e-06 54.3 36 80.6
Eucgr.F03134 Eucalyptus grandis HOM05D000415 ORTHO05D002017 6.1e-06 54.3 43 69.8
Rhsim11G0019500 Rhododendron simsii HOM05D001378 ORTHO05D001249 6.1e-06 54.3 40 72.5
Sed0001604 Sechium edule HOM05D001378 ORTHO05D001249 6.1e-06 54.3 37 75.7
PGSC0003DMG400026526 Solanum tuberosum HOM05D001378 ORTHO05D001249 6.1e-06 54.3 45 66.7
Aqoxy3G01902 Aquilegia oxysepala HOM05D000415 ORTHO05D011347 7.9e-06 53.9 39 69.2
arahy.Tifrunner.gnm1.ann1.TIK1PY Arachis hypogaea HOM05D000415 ORTHO05D002017 7.9e-06 53.9 40 72.5
MSTRG.1996 Avicennia marina HOM05D001378 ORTHO05D001249 7.9e-06 53.9 36 77.8
CSS0013686 Camellia sinensis var. sinensis HOM05D001378 ORTHO05D001249 7.9e-06 53.9 37 78.4
Carub.0003s1341 Capsella rubella HOM05D000415 ORTHO05D002017 7.9e-06 53.9 40 70.0
DCAR_008241 Daucus carota HOM05D001378 ORTHO05D001249 7.9e-06 53.9 36 75.0
Migut.E00779 Erythranthe guttata HOM05D001378 ORTHO05D001249 7.9e-06 53.9 37 75.7
HanXRQChr13g0419921 Helianthus annuus HOM05D001378 ORTHO05D001249 7.9e-06 53.9 48 68.8
Pp3c20_18540 Physcomitrium patens HOM05D000415 ORTHO05D002017 7.9e-06 53.9 38 73.7
Solyc09g091180.3 Solanum lycopersicum HOM05D000415 ORTHO05D002017 7.9e-06 53.9 36 75.0
Sopen09g034150 Solanum pennellii HOM05D000415 ORTHO05D002017 7.9e-06 53.9 36 75.0
PGSC0003DMG400011575 Solanum tuberosum HOM05D000415 ORTHO05D002017 7.9e-06 53.9 36 75.0


User provided reference genes

Program Settings