Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 2959.9 1476 100.0
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 2554.6 1477 86.5
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 2518.0 1478 85.7
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 2516.5 1468 86.0
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 2281.1 1478 78.0
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 2276.1 1479 78.4
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 2266.9 1478 77.7
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 2205.6 1479 76.7
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 2199.1 1479 76.5
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 2098.9 1489 72.5
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 2046.6 1498 70.4
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 2042.7 1501 70.2
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 2037.3 1486 70.6
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1744.9 1521 60.4
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1719.9 1520 59.5
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1710.7 1520 59.5
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1710.3 1521 60.1
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1696.8 1551 58.2
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1685.2 1526 58.8
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1651.3 1475 59.3
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1649.8 1515 58.5
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1649.4 1473 59.2
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1646.7 1513 58.0
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1642.9 1551 57.1
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1627.5 1540 56.7
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1624.4 1528 56.9
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1622.1 1525 57.7
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1604.3 1533 57.4
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1604.0 1615 54.6
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1603.2 1520 56.9
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1599.7 1535 57.3
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1591.2 1487 57.9
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1584.7 1558 56.0
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1583.2 1524 56.6
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1578.1 1523 56.8
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1569.3 1523 56.7
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1567.0 1561 55.7
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1561.6 1528 55.4
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1551.2 1609 53.3
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1527.7 1531 54.4
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1483.8 1512 54.2
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1480.7 1506 53.7
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1467.6 1502 53.9
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1467.6 1530 53.3
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1464.1 1533 52.9
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1463.0 1526 53.3
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1461.4 1513 53.4
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1438.3 1534 51.5
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1436.4 1514 53.0
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1435.2 1519 52.5
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1433.3 1423 55.4
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1429.8 1533 51.7
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1426.0 1515 52.3
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1419.8 1532 51.8
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1418.3 1562 51.3
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1416.0 1520 51.8
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1415.6 1509 52.0
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1415.6 1509 52.0
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1414.8 1343 57.9
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1413.7 1550 50.5
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1411.4 1533 52.2
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1409.4 1526 51.4
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1409.0 1533 51.1
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1407.1 1525 50.9
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1405.6 1514 52.0
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1405.2 1513 51.2
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1402.1 1535 51.2
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1400.6 1568 49.9
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1397.9 1525 51.6
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1395.2 1577 50.0
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1392.1 1545 49.8
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1391.3 1567 50.4
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1382.9 1544 50.1
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1377.5 1504 50.4
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1367.8 1486 51.7
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1364.0 1502 50.3
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1362.1 1522 50.3
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1359.4 1535 50.6
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1352.8 1515 48.8
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1344.3 1506 50.1
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1343.9 1532 50.1
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1332.4 1408 51.8
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1326.6 1527 49.9
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1326.6 1538 49.0
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1306.6 1293 55.3
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1302.0 1515 48.1
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1276.5 1350 52.1
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1250.0 1354 51.8
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1233.0 1575 46.3
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1195.6 1525 45.2
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1177.2 1451 47.7
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1157.9 1537 45.9
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1120.9 1120 54.3
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1085.9 1534 43.0
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 9.7e-305 1050.8 1094 53.0
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 4.1e-263 912.5 1008 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 1.6e-246 857.4 1624 35.7
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 1.2e-201 708.4 912 45.4
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 2.9e-176 624.0 484 68.4
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 3.8e-176 623.6 484 67.8
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 4.0e-157 560.5 1489 29.4
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.7e-147 528.5 1036 36.7
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 6.6e-136 490.0 683 42.5
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 4.9e-107 394.0 412 53.4
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.1e-57 229.2 600 31.3
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 8.8e-48 197.2 181 53.6
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 2.5e-42 179.1 167 62.3
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 5.2e-40 171.4 107 73.8
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 3.0e-32 145.6 93 68.8
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 5.7e-23 114.8 81 71.6
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.7e-20 105.9 88 60.2
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.7e-20 105.9 88 60.2
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 5.6e-18 98.2 89 47.2
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.2e-17 97.1 67 80.6
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 5.2e-16 91.7 101 47.5
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 9.8e-15 87.4 105 47.6


User provided reference genes

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