Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 3.0e-125 451.8 224 100.0
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 7.5e-100 367.5 222 85.6
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 8.0e-94 347.4 219 81.3
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 5.2e-93 344.7 219 79.9
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 3.4e-92 342.0 219 79.9
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 3.7e-91 338.6 221 80.5
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 3.7e-91 338.6 221 80.5
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 7.7e-89 330.9 218 78.4
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.0e-88 330.5 219 77.6
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.6e-86 323.2 218 76.1
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 8.9e-85 317.4 218 75.2
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.2e-84 317.0 224 74.1
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 4.0e-77 292.0 220 66.8
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 2.0e-76 289.7 220 68.2
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 7.5e-76 287.7 220 66.8
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 9.8e-76 287.3 220 65.5
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.9e-75 285.8 220 66.4
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 4.9e-75 285.0 167 86.2
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 8.3e-75 284.3 220 66.4
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 1.9e-74 283.1 220 65.5
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 5.4e-74 281.6 219 66.7
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.6e-73 280.0 221 65.6
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.6e-73 280.0 220 64.5
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 6.0e-73 278.1 219 66.2
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 1.3e-72 276.9 220 65.9
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.0e-72 275.8 220 64.1
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.0e-72 275.0 220 64.1
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 6.6e-72 274.6 220 64.5
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 8.6e-72 274.2 223 63.7
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.9e-71 273.1 220 64.5
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 5.6e-71 271.6 220 66.4
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 9.5e-71 270.8 224 61.6
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.2e-70 270.4 220 63.2
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 1.6e-70 270.0 221 63.8
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 3.6e-70 268.9 220 63.6
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 3.6e-70 268.9 220 64.5
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 4.7e-70 268.5 220 63.2
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 6.2e-70 268.1 220 65.5
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.8e-69 266.5 220 60.9
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 1.8e-69 266.5 222 61.7
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.8e-69 266.5 222 61.7
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.8e-69 266.5 219 63.9
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.3e-69 266.2 220 60.9
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.3e-69 266.2 226 61.9
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 5.2e-69 265.0 222 61.7
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 5.2e-69 265.0 224 60.7
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 6.8e-69 264.6 224 62.1
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 2.6e-68 262.7 220 62.3
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.4e-68 261.9 222 59.9
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 5.8e-68 261.5 220 62.7
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 5.8e-68 261.5 220 62.7
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 5.8e-68 261.5 219 64.8
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 5.8e-68 261.5 219 63.5
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.8e-68 261.5 219 60.7
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 5.8e-68 261.5 232 59.9
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 5.8e-68 261.5 220 60.9
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 5.8e-68 261.5 233 58.8
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 9.8e-68 260.8 232 59.5
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.7e-67 260.0 220 60.9
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 2.9e-67 259.2 219 63.5
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 8.3e-67 257.7 219 60.7
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 8.3e-67 257.7 221 60.2
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.1e-66 257.3 221 62.4
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.4e-66 256.9 220 59.5
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 1.9e-66 256.5 216 63.9
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 4.1e-66 255.4 222 60.8
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 2.1e-65 253.1 254 54.3
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 2.7e-65 252.7 224 59.8
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 4.6e-65 251.9 228 58.8
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 6.0e-65 251.5 223 61.9
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 7.8e-65 251.1 225 62.2
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 7.8e-65 251.1 225 62.2
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 7.8e-65 251.1 162 77.2
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.0e-64 250.8 218 60.1
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 1.0e-64 250.8 226 59.7
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 2.3e-64 249.6 223 61.4
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.3e-64 249.6 172 73.3
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 3.0e-64 249.2 221 61.1
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 3.0e-64 249.2 219 60.3
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 3.9e-64 248.8 161 77.0
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 5.1e-64 248.4 218 60.1
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 5.1e-64 248.4 226 58.4
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 8.6e-64 247.7 165 74.5
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 2.5e-63 246.1 168 73.2
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 7.3e-63 244.6 224 55.4
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 9.5e-63 244.2 162 75.9
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.2e-62 243.8 221 61.5
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.2e-62 241.5 226 57.5
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.4e-61 240.4 161 73.9
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 1.4e-61 240.4 220 58.2
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.4e-61 240.4 222 58.1
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 1.8e-61 240.0 161 75.2
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.8e-61 240.0 220 58.6
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 2.3e-61 239.6 220 55.0
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 2.3e-61 239.6 164 71.3
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.0e-61 238.8 224 57.6
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 8.9e-61 237.7 222 58.1
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.2e-60 237.3 165 72.1
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.2e-60 237.3 220 56.8
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 1.2e-60 237.3 220 56.8
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.6e-60 236.1 162 72.2
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 3.4e-60 235.7 219 56.6
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 3.4e-60 235.7 161 70.8
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.3e-59 233.8 162 71.6
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 1.7e-59 233.4 161 73.3
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 1.7e-59 233.4 219 58.0
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.7e-59 233.4 250 54.0
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 2.2e-59 233.0 161 69.6
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 2.9e-59 232.6 163 69.3
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 3.7e-59 232.3 219 58.4
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 3.7e-59 232.3 220 55.0
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 8.4e-59 231.1 221 56.6
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 8.4e-59 231.1 161 70.8
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 1.1e-58 230.7 220 58.6
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.1e-57 226.5 162 70.4
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.1e-57 226.5 161 72.0
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.5e-57 225.7 220 56.4
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 6.0e-57 224.9 220 52.7
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.0e-56 224.2 213 54.0
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.3e-56 223.8 243 53.5
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 5.1e-56 221.9 220 50.5
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.1e-55 220.7 165 66.1
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 5.6e-55 218.4 220 53.2
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 9.6e-55 217.6 162 66.0
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 3.6e-54 215.7 243 50.6
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 6.2e-54 214.9 167 67.7
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.4e-53 213.8 246 50.8
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.8e-53 213.4 246 50.8
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.8e-53 213.4 174 64.4
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.8e-53 213.4 141 74.5
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.8e-53 213.4 162 66.7
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 1.8e-53 213.4 162 66.7
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 2.4e-53 213.0 162 66.7
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.0e-53 212.2 219 53.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.0e-52 209.9 249 51.0
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.4e-52 209.1 161 64.6
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 3.2e-50 202.6 309 41.7
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.4e-50 201.8 125 77.6
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.2e-49 200.7 146 68.5
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.1e-49 199.9 244 49.2
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 6.0e-49 198.4 144 65.3
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 7.8e-49 198.0 137 72.3
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 1.5e-47 193.7 221 48.0
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 4.4e-44 182.2 171 60.2
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.0e-40 171.0 113 69.9
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 8.7e-40 167.9 197 52.3
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 8.7e-40 167.9 197 52.3
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.4e-37 160.6 112 66.1
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 1.3e-35 154.1 106 66.0
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 2.7e-33 146.4 143 51.0
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 8.7e-32 141.4 186 44.1
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 7.1e-26 121.7 113 55.8
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.4e-21 107.5 104 54.8
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 2.4e-21 106.7 108 56.5
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.0e-19 101.3 165 41.8
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 6.7e-16 88.6 51 84.3
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 2.2e-14 83.6 164 32.3
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 1.0e-11 74.7 59 64.4
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 2.7e-09 66.6 48 56.2


User provided reference genes

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