Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.6e-109 398.3 202 100.0
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 2.9e-79 298.9 201 78.6
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 2.8e-74 282.3 204 75.5
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 3.9e-71 271.9 216 69.4
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 3.9e-71 271.9 216 70.4
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 3.1e-68 262.3 217 66.8
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 8.9e-68 260.8 209 68.4
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.2e-67 260.4 211 70.6
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 1.3e-66 256.9 197 68.0
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.7e-66 256.5 206 68.9
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 8.3e-66 254.2 190 71.1
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.1e-65 253.8 194 70.1
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.4e-65 253.4 205 67.8
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 2.4e-65 252.7 206 68.0
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 4.1e-65 251.9 200 67.0
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 9.2e-65 250.8 158 79.1
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 9.2e-65 250.8 185 71.4
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 1.2e-64 250.4 163 74.2
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.2e-64 250.4 205 67.3
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.2e-64 250.4 192 69.3
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.2e-64 250.4 185 71.4
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.6e-64 250.0 219 65.8
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 2.7e-64 249.2 206 67.0
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 3.5e-64 248.8 155 77.4
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 3.5e-64 248.8 194 69.1
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 3.5e-64 248.8 216 64.4
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 4.6e-64 248.4 209 66.0
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 4.6e-64 248.4 205 65.4
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 6.0e-64 248.1 207 64.7
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 6.0e-64 248.1 207 64.7
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 7.8e-64 247.7 205 66.3
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 7.8e-64 247.7 195 68.7
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 7.8e-64 247.7 195 68.7
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.0e-63 247.3 190 69.5
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.3e-63 246.9 204 64.2
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.7e-63 246.5 163 74.8
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.7e-63 246.5 193 67.9
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.7e-63 246.5 204 66.2
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 2.3e-63 246.1 169 76.3
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.3e-63 246.1 208 63.5
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 2.3e-63 246.1 201 67.7
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.3e-63 246.1 205 66.8
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 3.0e-63 245.7 208 64.4
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 3.0e-63 245.7 204 64.2
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 3.0e-63 245.7 195 68.2
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 3.9e-63 245.4 215 65.1
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 5.0e-63 245.0 208 64.4
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 5.0e-63 245.0 199 67.3
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 5.0e-63 245.0 204 66.7
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 6.6e-63 244.6 205 63.9
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.6e-63 244.6 198 69.2
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 8.6e-63 244.2 205 63.9
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 8.6e-63 244.2 205 63.9
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.1e-62 243.8 206 64.1
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 1.1e-62 243.8 153 79.7
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.5e-62 243.4 194 68.0
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.9e-62 243.0 207 66.7
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 3.3e-62 242.3 218 64.2
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 4.3e-62 241.9 206 62.6
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 5.6e-62 241.5 212 64.2
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 7.3e-62 241.1 164 72.0
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 7.3e-62 241.1 215 64.7
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.6e-61 240.0 193 68.4
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 2.8e-61 239.2 186 68.8
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 3.6e-61 238.8 209 66.0
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 3.6e-61 238.8 203 64.5
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 4.7e-61 238.4 154 76.6
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 8.0e-61 237.7 196 64.8
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.4e-60 236.9 202 62.9
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.8e-60 236.5 154 78.6
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 2.3e-60 236.1 212 64.6
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.1e-60 235.7 218 62.4
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.1e-60 235.7 154 77.9
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 4.0e-60 235.3 154 77.9
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.0e-60 235.3 154 77.9
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.0e-60 235.3 154 77.9
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.0e-60 235.3 154 77.9
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 8.9e-60 234.2 195 66.7
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.2e-59 233.8 195 66.2
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.5e-59 233.4 205 63.9
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.5e-59 233.4 202 62.9
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 2.0e-59 233.0 214 58.9
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 5.8e-59 231.5 202 63.4
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 7.5e-59 231.1 206 63.6
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 9.8e-59 230.7 187 66.8
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 1.3e-58 230.3 205 65.4
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 1.3e-58 230.3 206 63.6
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 3.7e-58 228.8 200 64.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.4e-57 226.9 171 68.4
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 2.4e-57 226.1 211 60.7
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.1e-57 225.3 179 67.6
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.1e-57 225.3 179 67.6
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 4.1e-57 225.3 193 63.2
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.2e-57 224.2 179 68.2
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 9.2e-57 224.2 222 59.5
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.2e-56 223.8 162 68.5
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 1.0e-55 220.7 193 62.2
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.3e-55 220.3 206 61.2
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.3e-55 220.3 201 62.2
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.9e-55 218.8 213 59.6
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 6.6e-55 218.0 219 57.5
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.5e-54 216.9 212 60.4
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 2.5e-54 216.1 202 60.9
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 7.3e-54 214.5 121 84.3
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.6e-53 213.4 270 50.4
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.8e-53 212.6 206 62.6
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.4e-52 210.3 207 59.9
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.0e-52 208.8 201 62.7
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.5e-51 206.8 197 60.9
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 4.4e-51 205.3 299 44.5
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.9e-51 204.1 199 58.8
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.2e-50 203.0 208 56.2
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 6.4e-50 201.4 190 60.5
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.4e-49 200.3 126 75.4
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 7.1e-49 198.0 146 69.2
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 9.2e-49 197.6 214 54.7
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 3.5e-48 195.7 205 54.6
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 7.8e-48 194.5 195 57.9
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 3.3e-46 189.1 165 60.0
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.2e-45 187.2 154 60.4
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.6e-45 185.7 211 51.7
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.4e-44 183.0 146 62.3
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.4e-44 183.0 146 62.3
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 5.2e-44 181.8 102 86.3
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.5e-43 180.3 120 72.5
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 2.9e-42 176.0 145 62.1
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 9.6e-38 161.0 166 57.8
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 3.1e-36 156.0 93 76.3
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.0e-35 153.3 149 52.3
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.4e-35 152.1 148 52.0
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 2.2e-34 149.8 115 60.9
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 1.4e-33 147.1 106 62.3
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.6e-32 143.7 219 47.5
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.6e-32 143.7 112 56.2
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 6.0e-32 141.7 81 84.0
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 3.9e-31 139.0 106 59.4
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 2.1e-29 133.3 184 47.3
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.8e-26 122.5 80 72.5
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.4e-26 121.7 67 88.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.4e-26 121.7 67 88.1
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.0e-19 100.1 132 50.8
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.4e-17 94.0 64 73.4
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 9.3e-17 91.3 130 47.7
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 5.7e-14 82.0 50 76.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 3.4e-11 72.8 161 34.2
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 5.1e-07 58.9 38 73.7


User provided reference genes

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