Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1495.3 732 100.0
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1419.8 732 94.3
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1416.7 732 94.1
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1414.8 732 94.3
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1403.7 732 93.2
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1384.0 733 91.1
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1374.0 729 91.2
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1372.8 733 90.7
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1372.5 732 90.3
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1360.9 733 89.1
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1356.7 732 89.3
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1338.6 732 88.0
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1337.0 723 88.8
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1321.2 734 86.2
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 734 85.6
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 731 86.0
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1312.0 732 85.9
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1310.8 730 85.6
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1310.4 732 85.5
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1309.7 732 85.2
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1309.7 730 85.5
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1309.7 730 85.5
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1309.7 732 86.9
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1307.4 720 87.8
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1307.0 734 85.1
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1306.2 734 84.9
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1305.0 734 85.3
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1303.5 734 84.9
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1301.2 734 85.1
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1300.8 749 84.4
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1300.8 732 85.5
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1297.0 744 83.3
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1297.0 734 84.6
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1296.6 732 84.8
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1293.9 732 84.6
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1292.7 732 85.2
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1291.6 732 83.3
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1290.8 732 84.0
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1287.3 732 84.3
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1286.6 734 83.9
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1286.2 732 84.3
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1285.0 732 84.6
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1284.6 734 83.9
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1284.6 735 83.9
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1283.5 732 84.8
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1283.5 734 83.9
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1282.3 732 84.6
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1281.5 734 83.8
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1280.8 734 84.1
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1280.8 732 83.1
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1279.2 734 83.2
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1279.2 732 83.5
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1277.7 733 84.0
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1276.9 733 83.8
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1276.5 739 83.2
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1276.2 732 84.3
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1273.8 732 83.3
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1272.3 733 83.5
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1270.8 775 80.3
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1265.4 734 82.8
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1265.0 732 83.1
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1263.8 732 82.7
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1261.1 734 83.1
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1260.7 732 82.4
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1260.7 734 82.3
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1259.2 732 82.2
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1258.4 732 81.6
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1258.4 732 82.0
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1257.7 732 81.7
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1257.7 732 81.4
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1256.1 732 81.6
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1251.9 724 82.7
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1250.7 781 78.4
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1245.7 659 91.2
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1245.0 694 84.1
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1243.0 735 80.7
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1242.6 732 80.3
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1242.6 733 81.0
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1239.6 779 77.3
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1239.6 779 77.3
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1238.4 732 80.7
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1235.7 732 80.1
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1234.2 732 80.9
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1232.2 830 74.7
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1231.9 732 79.9
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1231.5 784 76.8
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1230.3 732 80.2
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1229.9 732 80.1
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1229.2 732 80.2
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1229.2 732 80.3
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1228.0 732 79.9
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1227.6 732 80.2
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1221.8 732 79.5
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1216.1 732 79.1
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1214.9 732 78.7
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1208.7 705 80.6
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1207.2 733 78.7
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1204.5 734 80.2
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1203.7 733 80.1
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1203.3 735 78.5
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1194.9 734 80.0
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1192.2 750 76.7
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1187.2 735 79.3
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1186.8 663 84.0
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1180.2 744 76.9
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1178.3 744 76.7
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1174.8 743 76.3
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1171.8 669 85.1
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1152.9 735 75.1
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1150.6 734 75.9
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1139.0 734 74.3
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1138.3 705 76.2
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1133.2 741 74.1
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1123.6 616 87.3
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1118.2 701 76.2
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1114.0 735 72.8
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1103.2 616 85.2
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1084.7 734 71.3
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1081.2 732 73.4
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 1.0e-307 1059.7 585 86.2
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 1.2e-300 1036.2 752 69.5
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 1.6e-300 1035.8 695 72.2
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 6.5e-286 987.3 734 65.5
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 8.5e-286 986.9 735 64.9
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 2.8e-281 971.8 713 64.9
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.5e-277 958.7 697 68.4
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.0e-262 910.2 654 67.1
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 4.9e-257 891.3 703 61.2
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 1.1e-256 890.2 668 63.5
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 5.6e-253 877.9 568 75.4
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 4.7e-252 874.8 694 61.4
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.4e-250 868.6 508 84.1
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 2.0e-234 816.2 702 57.1
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 2.7e-231 805.8 783 53.1
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 2.7e-223 779.2 502 75.1
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.6e-210 736.1 417 83.5
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 4.5e-210 735.3 705 53.9
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 7.7e-178 628.2 422 72.0
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 8.0e-159 565.1 377 70.8
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 3.5e-154 549.7 303 88.4
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 3.8e-145 519.6 317 79.5
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.2e-143 514.6 357 71.4
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 2.1e-143 513.8 311 81.4
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 4.0e-142 509.6 349 76.5
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.4e-126 458.0 341 67.7
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 7.8e-114 415.6 280 72.5
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 3.5e-106 390.2 312 63.5
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 7.1e-99 365.9 429 52.2
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.3e-89 334.3 183 79.2
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.3e-89 334.3 209 75.6
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.2e-82 312.0 353 52.7
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 6.5e-68 263.1 221 61.5
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.4e-65 255.4 168 66.1
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.5e-64 251.9 203 60.1
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 5.3e-62 243.4 203 63.1
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.8e-47 194.5 219 44.7
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 2.7e-42 177.9 207 51.2
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 4.7e-42 177.2 208 51.9
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 1.8e-41 175.3 127 63.0
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 7.5e-40 169.9 101 75.2
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 3.5e-29 134.4 80 73.8
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 6.6e-28 130.2 161 49.1
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 2.1e-26 125.2 138 48.6
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.1e-22 112.8 79 64.6
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 1.1e-22 112.8 126 50.0
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 2.4e-22 111.7 60 86.7
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.7e-20 105.5 127 51.2
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.1e-19 102.8 187 37.4
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 3.3e-19 101.3 187 37.4
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 6.8e-17 93.6 111 46.8
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 1.5e-16 92.4 110 48.2
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 2.4e-14 85.1 46 80.4
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 4.1e-14 84.3 328 30.5
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 8.6e-12 76.6 49 79.6
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 3.6e-10 71.2 46 69.6
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-08 65.9 93 45.2
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-08 65.5 75 52.0
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 3.4e-08 64.7 40 72.5
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 2.2e-07 62.0 45 75.6
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 8.3e-07 60.1 34 82.4
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 7.1e-06 57.0 48 62.5


User provided reference genes

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