Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g016880 Pisum sativum HOM05D003490 ORTHO05D009397 1.4e-190 669.5 339 100.0
Ca_20969_v3 Cicer arietinum L. HOM05D003490 ORTHO05D004835 1.3e-76 290.8 323 56.7
Lj9A542G29 Lonicera japonica HOM05D003490 ORTHO05D004835 1.8e-76 290.4 302 58.9
Medtr4g005410 Medicago truncatula HOM05D003490 ORTHO05D004835 1.8e-76 290.4 323 56.3
Psat7g265520 Pisum sativum HOM05D003490 ORTHO05D004835 3.0e-76 289.7 323 56.7
Psat7g142360 Pisum sativum HOM05D003490 ORTHO05D006323 1.1e-75 287.7 330 55.5
Lj3g0014966 Lotus japonicus HOM05D003490 ORTHO05D004835 7.4e-75 285.0 323 55.7
Aqoxy4G02358 Aquilegia oxysepala HOM05D003490 ORTHO05D004835 4.8e-74 282.3 323 54.5
Aqoxy7G02759 Aquilegia oxysepala HOM05D003490 ORTHO05D004835 4.8e-74 282.3 323 54.5
CANSAT01G2292 Cannabis sativa HOM05D003490 ORTHO05D004835 6.2e-74 282.0 323 54.8
MBI16_g34879_MAGBIO Magnolia biondii HOM05D003490 ORTHO05D004835 6.2e-74 282.0 299 57.2
Solyc12g055800.3 Solanum lycopersicum HOM05D003490 ORTHO05D004835 6.2e-74 282.0 323 55.1
Sopen12g024260 Solanum pennellii HOM05D003490 ORTHO05D004835 6.2e-74 282.0 323 55.1
Rhsim08G0250100 Rhododendron simsii HOM05D003490 ORTHO05D004835 1.8e-73 280.4 323 54.2
GSVIVG01029546001 Vitis vinifera HOM05D003490 ORTHO05D004835 1.8e-73 280.4 323 54.8
Prupe.3G022700 Prunus persica HOM05D003490 ORTHO05D004835 3.1e-73 279.6 323 54.8
PGSC0003DMG400028839 Solanum tuberosum HOM05D003490 ORTHO05D004835 3.1e-73 279.6 323 54.8
Hma1.2p1_3612F.1_g337050 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 5.3e-73 278.9 323 54.5
MD17G1162700 Malus domestica HOM05D003490 ORTHO05D004835 5.3e-73 278.9 323 54.8
DCAR_007671 Daucus carota HOM05D003490 ORTHO05D004835 9.0e-73 278.1 323 54.5
MD09G1165200 Malus domestica HOM05D003490 ORTHO05D004835 9.0e-73 278.1 323 54.8
Actinidia38808 Actinidia chinensis HOM05D003490 ORTHO05D004835 1.2e-72 277.7 323 53.9
HanXRQChr12g0359711 Helianthus annuus HOM05D003490 ORTHO05D004835 1.2e-72 277.7 323 54.2
Sabra08G0002500 Salix brachista HOM05D003490 ORTHO05D004835 1.2e-72 277.7 323 53.9
RcHm_v2.0_Chr2g0149541 Rosa chinensis HOM05D003490 ORTHO05D004835 1.5e-72 277.3 323 53.9
arahy.Tifrunner.gnm1.ann1.A6WMM1 Arachis hypogaea HOM05D003490 ORTHO05D004835 2.0e-72 276.9 323 53.9
arahy.Tifrunner.gnm1.ann1.EJI1J0 Arachis hypogaea HOM05D003490 ORTHO05D004835 2.0e-72 276.9 323 53.9
Sed0012993 Sechium edule HOM05D003490 ORTHO05D004835 2.0e-72 276.9 323 54.5
Actinidia21886 Actinidia chinensis HOM05D003490 ORTHO05D004835 2.6e-72 276.6 323 53.6
ECA234G0432 Erigeron canadensis HOM05D003490 ORTHO05D004835 2.6e-72 276.6 323 54.2
ECA234G3399 Erigeron canadensis HOM05D003490 ORTHO05D004835 2.6e-72 276.6 323 54.2
Nitab4.5_0007548g0050 Nicotiana tabacum HOM05D003490 ORTHO05D004835 3.4e-72 276.2 315 54.6
Potri.010G253500 Populus trichocarpa HOM05D003490 ORTHO05D004835 3.4e-72 276.2 323 53.9
Ciclev10030969m.g Citrus clementina HOM05D003490 ORTHO05D004835 4.5e-72 275.8 323 53.6
HanXRQChr10g0311201 Helianthus annuus HOM05D003490 ORTHO05D004835 4.5e-72 275.8 323 53.9
Atru.chr1.2661 Acer truncatum HOM05D003490 ORTHO05D004835 5.8e-72 275.4 323 53.6
Lalb_Chr01g0011701 Lupinus albus HOM05D003490 ORTHO05D004835 5.8e-72 275.4 323 53.6
Manes.06G177500 Manihot esculenta HOM05D003490 ORTHO05D004835 5.8e-72 275.4 323 54.2
Eucgr.F04030 Eucalyptus grandis HOM05D003490 ORTHO05D004835 7.6e-72 275.0 323 53.6
Glyma.08G224400 Glycine max HOM05D003490 ORTHO05D004835 7.6e-72 275.0 323 53.6
MELO3C024284.2 Cucumis melo HOM05D003490 ORTHO05D004835 1.0e-71 274.6 323 53.6
FvH4_6g37000 Fragaria vesca HOM05D003490 ORTHO05D004835 1.0e-71 274.6 323 53.6
FAN02G2379 Fragaria x ananassa HOM05D003490 ORTHO05D004835 1.0e-71 274.6 323 53.6
FAN05G5356 Fragaria x ananassa HOM05D003490 ORTHO05D004835 1.0e-71 274.6 323 53.6
FAN09G3564 Fragaria x ananassa HOM05D003490 ORTHO05D004835 1.0e-71 274.6 323 53.6
FAN14G5213 Fragaria x ananassa HOM05D003490 ORTHO05D004835 1.0e-71 274.6 323 53.6
TWI75G0499 Tripterygium wilfordii HOM05D003490 ORTHO05D004835 1.0e-71 274.6 323 53.3
TAR383G0695 Trochodendron aralioides HOM05D003490 ORTHO05D004835 1.0e-71 274.6 323 53.9
Potri.008G005000 Populus trichocarpa HOM05D003490 ORTHO05D004835 1.3e-71 274.2 323 53.6
THA.LOC104812329 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 1.3e-71 274.2 323 53.9
Duzib192G0250 Durio zibethinus HOM05D003490 ORTHO05D004835 1.7e-71 273.9 323 53.3
Gohir.A10G002200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 1.7e-71 273.9 323 53.3
Gohir.D10G002200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 1.7e-71 273.9 323 53.3
Gorai.011G002600 Gossypium raimondii HOM05D003490 ORTHO05D004835 1.7e-71 273.9 323 53.3
Nitab4.5_0002354g0050 Nicotiana tabacum HOM05D003490 ORTHO05D004835 1.7e-71 273.9 323 54.2
Nitab4.5_0003757g0110 Nicotiana tabacum HOM05D003490 ORTHO05D004835 1.7e-71 273.9 323 54.2
VMungo0331G0590 Vigna mungo HOM05D003490 ORTHO05D004835 1.7e-71 273.9 323 53.3
AL2G39320 Arabidopsis lyrata HOM05D003490 ORTHO05D004835 2.2e-71 273.5 323 53.3
Carub.0002s2573 Capsella rubella HOM05D003490 ORTHO05D004835 2.2e-71 273.5 323 53.3
THA.LOC104808104 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 2.2e-71 273.5 323 53.6
TAR626G0762 Trochodendron aralioides HOM05D003490 ORTHO05D004835 2.2e-71 273.5 323 53.9
Nn8g40889 Nelumbo nucifera HOM05D003490 ORTHO05D004835 2.9e-71 273.1 323 52.9
Solyc06g063330.3 Solanum lycopersicum HOM05D003490 ORTHO05D004835 2.9e-71 273.1 323 53.3
Sopen06g022800 Solanum pennellii HOM05D003490 ORTHO05D004835 2.9e-71 273.1 323 53.3
TWI18G1026 Tripterygium wilfordii HOM05D003490 ORTHO05D004835 2.9e-71 273.1 323 53.3
AT1G78900 Arabidopsis thaliana HOM05D003490 ORTHO05D004835 3.8e-71 272.7 323 53.3
CAN.G308.15 Capsicum annuum HOM05D003490 ORTHO05D004835 3.8e-71 272.7 323 53.6
Eucgr.J03179 Eucalyptus grandis HOM05D003490 ORTHO05D004835 3.8e-71 272.7 323 53.6
Sp5g33920 Schrenkiella parvula HOM05D003490 ORTHO05D004835 3.8e-71 272.7 323 53.6
BcaC03g15855 Brassica carinata HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 53.6
BcaC08g45403 Brassica carinata HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 53.6
A02p22410 Brassica napus HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 53.6
A07p27430 Brassica napus HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 53.6
C02p36070 Brassica napus HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 53.6
C06p30350 Brassica napus HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 53.6
BolC2t09622H Brassica oleracea HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 53.6
BolC6t38198H Brassica oleracea HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 53.6
BraA02t07245Z Brassica rapa HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 53.6
BraA07t30384Z Brassica rapa HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 53.6
Duzib235G1262 Durio zibethinus HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 52.9
Glyma.07G002300 Glycine max HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 53.3
Gohir.A05G114800 Gossypium hirsutum HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 52.9
Gohir.D05G115200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 52.9
Gorai.009G119300 Gossypium raimondii HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 52.9
Lsat_1_v5_gn_5_137221 Lactuca sativa HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 53.3
Thecc.06G057300 Theobroma cacao HOM05D003490 ORTHO05D004835 4.9e-71 272.3 323 53.3
ATR0626G015 Amborella trichopoda HOM05D003490 ORTHO05D004835 6.5e-71 271.9 323 53.3
Cfa002154 Carpinus fangiana HOM05D003490 ORTHO05D004835 6.5e-71 271.9 323 53.3
ClCG09G001630 Citrullus lanatus HOM05D003490 ORTHO05D004835 6.5e-71 271.9 323 53.3
CsaV3_7G033710 Cucumis sativus L. HOM05D003490 ORTHO05D004835 6.5e-71 271.9 323 52.9
PGR102G0759 Punica granatum HOM05D003490 ORTHO05D004835 6.5e-71 271.9 323 53.6
THA.LOC104813629 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 6.5e-71 271.9 323 53.6
GSVIVG01035538001 Vitis vinifera HOM05D003490 ORTHO05D004835 6.5e-71 271.9 323 53.6
MSTRG.9558 Avicennia marina HOM05D003490 ORTHO05D004835 8.4e-71 271.6 323 53.6
BcaB02g07185 Brassica carinata HOM05D003490 ORTHO05D004835 8.4e-71 271.6 323 53.6
BcaB03g16050 Brassica carinata HOM05D003490 ORTHO05D004835 8.4e-71 271.6 323 53.6
BcaB05g25163 Brassica carinata HOM05D003490 ORTHO05D004835 8.4e-71 271.6 323 53.6
BcaC08g47444 Brassica carinata HOM05D003490 ORTHO05D004835 8.4e-71 271.6 323 53.6
A07p44070 Brassica napus HOM05D003490 ORTHO05D004835 8.4e-71 271.6 323 53.6
C06p52800 Brassica napus HOM05D003490 ORTHO05D004835 8.4e-71 271.6 323 53.6
BolC6t40297H Brassica oleracea HOM05D003490 ORTHO05D004835 8.4e-71 271.6 323 53.6
BraA07t31915Z Brassica rapa HOM05D003490 ORTHO05D004835 8.4e-71 271.6 323 53.6
Cpa.g.sc155.13 Carica papaya HOM05D003490 ORTHO05D004835 8.4e-71 271.6 323 53.6
Oeu049636.1 Olea europaea HOM05D003490 ORTHO05D004835 8.4e-71 271.6 323 53.3
CSS0028180 Camellia sinensis var. sinensis HOM05D003490 ORTHO05D004835 1.1e-70 271.2 323 52.9
Manes.14G008200 Manihot esculenta HOM05D003490 ORTHO05D004835 1.1e-70 271.2 323 53.3
vmacro18745 Vaccinium macrocarpon HOM05D003490 ORTHO05D004835 1.1e-70 271.2 335 51.6
Duzib160G0715 Durio zibethinus HOM05D003490 ORTHO05D004835 1.4e-70 270.8 323 52.9
PSO144G0044 Papaver somniferum HOM05D003490 ORTHO05D004835 1.4e-70 270.8 323 52.9
PSO170G3382 Papaver somniferum HOM05D003490 ORTHO05D004835 1.4e-70 270.8 323 52.9
PGSC0003DMG400026502 Solanum tuberosum HOM05D003490 ORTHO05D004835 1.4e-70 270.8 323 52.9
Phvul.010G163900 Phaseolus vulgaris HOM05D003490 ORTHO05D004835 1.9e-70 270.4 323 52.9
SalBow6G0193 Salvia bowleyana HOM05D003490 ORTHO05D004835 1.9e-70 270.4 323 53.6
CARHR072490 Cardamine hirsuta HOM05D003490 ORTHO05D004835 2.5e-70 270.0 323 52.6
Cc04_g00160 Coffea canephora HOM05D003490 ORTHO05D004835 2.5e-70 270.0 323 52.6
Migut.D00889 Erythranthe guttata HOM05D003490 ORTHO05D004835 2.5e-70 270.0 323 53.3
QL05p084430 Quercus lobata HOM05D003490 ORTHO05D004835 2.5e-70 270.0 323 52.3
QL05p084776 Quercus lobata HOM05D003490 ORTHO05D004835 2.5e-70 270.0 323 52.3
Aa31LG4G2100 Aethionema arabicum HOM05D003490 ORTHO05D004835 4.2e-70 269.2 323 52.3
MSTRG.4524 Avicennia marina HOM05D003490 ORTHO05D004835 4.2e-70 269.2 323 52.9
CiPaw.01G091000 Carya illinoinensis HOM05D003490 ORTHO05D004835 4.2e-70 269.2 323 52.6
Migut.I01199 Erythranthe guttata HOM05D003490 ORTHO05D004835 4.2e-70 269.2 323 53.3
Dinv37778 Davidia involucrata HOM05D003490 ORTHO05D004835 7.1e-70 268.5 323 52.9
Lsat_1_v5_gn_4_89100 Lactuca sativa HOM05D003490 ORTHO05D004835 1.2e-69 267.7 323 52.9
Hma1.2p1_0517F.1_g170820 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 1.6e-69 267.3 342 51.5
SGA_v2.0_scaffold71G23987 Striga asiatica HOM05D003490 ORTHO05D004835 1.6e-69 267.3 323 52.6
AUR62036002 Chenopodium quinoa HOM05D003490 ORTHO05D004835 2.1e-69 266.9 323 52.6
Hund22442 Selenicereus undatus HOM05D003490 ORTHO05D004835 2.7e-69 266.5 323 51.7
Hma1.2p1_1111F.1_g258430 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 3.5e-69 266.2 323 52.3
EL10Ac2g03529 Beta vulgaris HOM05D003490 ORTHO05D004835 4.6e-69 265.8 323 52.6
AUR62041619 Chenopodium quinoa HOM05D003490 ORTHO05D004835 4.6e-69 265.8 323 52.3
Thhalv10018288m.g Eutrema salsugineum HOM05D003490 ORTHO05D004835 4.6e-69 265.8 323 52.3
Os06g0662000 Oryza sativa ssp. japonica HOM05D003490 ORTHO05D004835 6.0e-69 265.4 323 51.7
Zm00001eb233450 Zea mays HOM05D003490 ORTHO05D004835 6.0e-69 265.4 323 52.3
Sabra10G0197200 Salix brachista HOM05D003490 ORTHO05D004835 7.9e-69 265.0 340 51.2
SEGI_20998 Sequoiadendron giganteum HOM05D003490 ORTHO05D004835 3.9e-68 262.7 323 51.7
Sc15g0001120 Simmondsia chinensis HOM05D003490 ORTHO05D004835 3.9e-68 262.7 323 52.0
Oeu038373.4 Olea europaea HOM05D003490 ORTHO05D004835 6.7e-68 261.9 353 49.9
CDE02G3722 Ceratophyllum demersum HOM05D003490 ORTHO05D004835 8.7e-68 261.5 323 51.7
Nitab4.5_0000357g0270 Nicotiana tabacum HOM05D003490 ORTHO05D004835 2.5e-67 260.0 335 50.7
Os02g0175400 Oryza sativa ssp. japonica HOM05D003490 ORTHO05D004835 5.7e-67 258.8 323 51.1
HPP92_010142 Vanilla planifolia HOM05D003490 ORTHO05D004835 9.7e-67 258.1 323 51.4
unitig_748.g7473 Utricularia gibba HOM05D003490 ORTHO05D004835 1.6e-66 257.3 292 56.2
SGA_v2.0_scaffold122G33265 Striga asiatica HOM05D003490 ORTHO05D004835 5.3e-65 252.3 345 48.7
Peaxi162Scf00177g00618 Petunia axillaris HOM05D003490 ORTHO05D004835 2.0e-64 250.4 323 51.1
Haze_16255 Corylus avellana HOM05D003490 ORTHO05D004835 1.7e-63 247.3 380 45.5
CDE06G2075 Ceratophyllum demersum HOM05D003490 ORTHO05D004835 6.5e-63 245.4 314 51.0
CAN.G390.38 Capsicum annuum HOM05D003490 ORTHO05D004835 1.1e-62 244.6 309 51.5
Pp3c20_16000 Physcomitrium patens HOM05D003490 ORTHO05D004835 1.2e-61 241.1 321 48.6
Pp3c8_10370 Physcomitrium patens HOM05D003490 ORTHO05D004835 1.2e-61 241.1 323 48.0
Pp3c23_8330 Physcomitrium patens HOM05D003490 ORTHO05D004835 6.1e-61 238.8 321 48.0
CBR_g8589 Chara braunii HOM05D003490 ORTHO05D004835 3.9e-60 236.1 323 45.8
Mapoly0011s0112 Marchantia polymorpha HOM05D003490 ORTHO05D004835 3.3e-59 233.0 323 46.7
Ah.16g108080 Amaranthus hybridus HOM05D003490 ORTHO05D004835 3.7e-58 229.6 304 50.3
Dinv20336 Davidia involucrata HOM05D003490 ORTHO05D032829 1.1e-57 228.0 186 64.5
BcaB08g35590 Brassica carinata HOM05D003490 ORTHO05D005034 8.5e-55 218.4 174 65.5
Zm00001eb206930 Zea mays HOM05D003490 ORTHO05D004835 8.5e-55 218.4 295 49.2
PRCOL_00000884 Prasinoderma coloniale HOM05D003490 ORTHO05D004835 3.9e-52 209.5 325 42.5
Cre10.g461050 Chlamydomonas reinhardtii HOM05D003490 ORTHO05D004835 6.7e-52 208.8 315 43.5
CSS0005058 Camellia sinensis var. sinensis HOM05D003490 ORTHO05D028416 1.1e-51 208.0 320 45.9
MCO15G659 Micromonas commoda HOM05D003490 ORTHO05D004835 7.4e-51 205.3 321 41.4
SMO351G0215 Selaginella moellendorffii HOM05D003490 ORTHO05D004835 9.1e-49 198.4 295 46.1
Aa31LG4G2210 Aethionema arabicum HOM05D003490 ORTHO05D004835 1.5e-48 197.6 228 52.6
Hund19288 Selenicereus undatus HOM05D003490 ORTHO05D004835 1.8e-44 184.1 323 42.1
Haze_26600 Corylus avellana HOM05D003490 ORTHO05D004835 1.1e-41 174.9 315 37.1
COL.COLO4_31156 Corchorus olitorius HOM05D003490 ORTHO05D004835 1.4e-41 174.5 296 43.6
Sc12g0011170 Simmondsia chinensis HOM05D003490 ORTHO05D032829 2.4e-33 147.1 178 50.6
BcaB03g15562 Brassica carinata HOM05D003490 ORTHO05D032829 9.1e-33 145.2 142 57.7
Cfa023814 Carpinus fangiana HOM05D003490 ORTHO05D002242 2.7e-29 133.7 284 33.1
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 3.6e-29 133.3 141 51.1
CDE05G1125 Ceratophyllum demersum HOM05D003490 ORTHO05D009397 1.6e-24 117.9 188 36.2
AagrBONN_evm.TU.Sc2ySwM_368.2488 Anthoceros agrestis HOM05D003490 ORTHO05D004835 5.5e-22 109.4 232 37.5
TPR.G38757 Trifolium pratense HOM05D003490 ORTHO05D004835 3.6e-21 106.7 168 47.6
MSTRG.10875 Avicennia marina HOM05D003490 ORTHO05D004835 7.5e-19 99.0 168 44.6
BcaB04g17947 Brassica carinata HOM05D003490 ORTHO05D013026 3.3e-14 83.6 59 71.2
Gohir.D10G186500 Gossypium hirsutum HOM05D003089 ORTHO05D014076 4.7e-13 79.7 86 53.5
Gorai.010G148500 Gossypium raimondii HOM05D003089 ORTHO05D014076 2.6e-11 73.9 56 64.3
Aa31LG6G1740 Aethionema arabicum HOM05D001577 ORTHO05D003311 3.5e-08 63.5 68 50.0
Psat5g269000 Pisum sativum HOM05D001097 ORTHO05D001009 3.3e-06 57.0 46 58.7
arahy.Tifrunner.gnm1.ann1.8FYK6V Arachis hypogaea HOM05D001097 ORTHO05D001009 5.6e-06 56.2 38 65.8
arahy.Tifrunner.gnm1.ann1.IB5R27 Arachis hypogaea HOM05D001097 ORTHO05D001009 5.6e-06 56.2 38 65.8
Medtr2g089785 Medicago truncatula HOM05D001097 ORTHO05D001009 7.3e-06 55.8 46 58.7


User provided reference genes

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